Ec-00_004790.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004790.1
Unique NameEc-00_004790.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length118
Homology
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BLAST of Ec-00_004790.1 vs. uniprot
Match: D7G856_ECTSI (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G856_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.340e-21
Identity = 49/65 (75.38%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   10 QPPALSRGGGPRHTRYCAPCLAPISAQRGRDSGAVCVRRWRRNRLRYTKNRSNRLLGGLLLCAAA 204
            QPPALSRGG PR T  CAPCLAP+SAQRGRD GA CVR WRRNR R TKN      GGLLLCAAA
Sbjct:    3 QPPALSRGGRPRQTTCCAPCLAPVSAQRGRDGGAECVRGWRRNRQRDTKN-----FGGLLLCAAA 62
The following BLAST results are available for this feature:
BLAST of Ec-00_004790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G856_ECTSI2.340e-2175.384a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6561761..6564102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue1e-17
Seed eggNOG ortholog2880.D7G856
Length354
KEGG rclassRC01208
KEGG koko:K01724
KEGG ReactionR04734
KEGG Pathwayko00790,map00790
Hectar predicted targeting categorysignal anchor
Gene idEc-00_004790.1
EggNOG free text desc.4-alpha-hydroxytetrahydrobiopterin dehydratase activity
EggNOG OGsCOG2154@1,KOG4073@2759
EC4.2.1.96
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004790Ec-00_004790Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6561761..6564102 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004790.1.1Ec-00_004790.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6561761..6561772 +
Ec-00_004790.1.2Ec-00_004790.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6562287..6562625 +
Ec-00_004790.1.3Ec-00_004790.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6564100..6564102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004790.1CDS:Ec-00_004790.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6561761..6561772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004790.1Ec-00_004790.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6561761..6564102 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004790.1 ID=Ec-00_004790.1|Name=Ec-00_004790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=118bp
MASQPPALSRGGGPRHTRYCAPCLAPISAQRGRDSGAVCVRRWRRNRLRY
TKNRSNRLLGGLLLCAAAVCSCCSLSVIETSRLPNNPVLFPFASRKTEAQ
KTLSAASRAQRRRGHGT*
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spliced messenger RNA

>Ec-00_004790.1 ID=Ec-00_004790.1|Name=Ec-00_004790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=354bp|location=Sequence derived from alignment at chr_00:6561761..6564102+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTCAGCCTCCGGCTCTTTCGCGAGGAGGGGGACCAAGACACAC
AAGGTACTGCGCGCCGTGTCTCGCGCCCATCAGCGCGCAGCGGGGCCGCG
ACAGTGGCGCAGTGTGCGTGAGGAGGTGGCGGCGCAACCGGTTGCGGTAC
ACAAAGAATAGGTCAAATCGTCTTTTGGGGGGGCTGCTGCTGTGTGCAGC
TGCTGTGTGCAGCTGCTGTAGTCTGTCTGTTATAGAAACTTCGCGGCTAC
CAAACAATCCAGTGCTTTTTCCTTTCGCGTCCAGGAAGACCGAGGCGCAA
AAGACACTGTCCGCCGCGTCTCGCGCCCAGCGCCGCCGCGGTCATGGCAC
GTGA
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protein sequence of Ec-00_004790.1

>Ec-00_004790.1 ID=Ec-00_004790.1|Name=Ec-00_004790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=118bp
MASQPPALSRGGGPRHTRYCAPCLAPISAQRGRDSGAVCVRRWRRNRLRY
TKNRSNRLLGGLLLCAAAVCSCCSLSVIETSRLPNNPVLFPFASRKTEAQ
KTLSAASRAQRRRGHGT*
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mRNA from alignment at chr_00:6561761..6564102+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004790.1 ID=Ec-00_004790.1|Name=Ec-00_004790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2342bp|location=Sequence derived from alignment at chr_00:6561761..6564102+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTCTCAGGTAATCATGCGTTGGCGGTATTGCTTTCTAGCACCAAC
CAGTCTACGCACTCAGCAACGTTTGACGCACCAGCCAAAGGTCGCCTACC
TTGGTTCATTTATGGTCCCATGGGAGTCTACTCACGAACTCACGAACTCA
CGAACGAATGTCTCTGGTGCATGTACCTTTCCCCATCACGTGGTTCGCAC
ATAGTGCCGTAAGGCGGGGTGGACGAAACCGCACGGCTACAGTTCCGGGA
AAGATGCCAACCGGAGCTGACAAGAAAGATCAAGACCACGATCACTGGCG
TAAAAGGGAGGCGGTGTGGGGAGGCTGGGGTGATCAGGAAGCTTATGACA
AAAAGATGGCCGAGACGAAGGAGAAGCGCGACGCCGCGCGTGAGGTGCAC
GAGGCCAACCAGAAGAAAATACAGGAGGATTTATTGTGTCATAGCAAAAC
TTTGTAGGCCGTCGTTGTCGTTGCCGTCGTCGTTGTTGTTGTCGCCCCTT
TTCAAAAACGCGCTGTTCGATTTCAGCCTCCGGCTCTTTCGCGAGGAGGG
GGACCAAGACACACAAGGTACTGCGCGCCGTGTCTCGCGCCCATCAGCGC
GCAGCGGGGCCGCGACAGTGGCGCAGTGTGCGTGAGGAGGTGGCGGCGCA
ACCGGTTGCGGTACACAAAGAATAGGTCAAATCGTCTTTTGGGGGGGCTG
CTGCTGTGTGCAGCTGCTGTGTGCAGCTGCTGTAGTCTGTCTGTTATAGA
AACTTCGCGGCTACCAAACAATCCAGTGCTTTTTCCTTTCGCGTCCAGGA
AGACCGAGGCGCAAAAGACACTGTCCGCCGCGTCTCGCGCCCAGCGCCGC
CGCGGTCATGGCACGGTGAGTCTGCGGGGGTGGCGCCACAACCGGCTGTG
CGGTCCACAAAAAAAAAGGTGAAATCGTTTTTTTTGGGGTGCGCTGCTGT
GCTGTGCCGTTGAGGTCTCTGTCTTACAACAACCTCACGGCTACCAATCC
AGCGCTCTCCTTTCGCGCGGAGAGAGACCGAGGCACGCAAGGTGCGGCAC
GACGTGTCTCGCGCCCAGAGCGGCCGCGGTGGTGGCGCATGGGTGACACA
GCAGTAGTAGCAGTCAGAAGGATGTTCGCAGGAAAGCATGTATGTACGGT
TGCCCCGGTGGTCTTCTAGTTGGTAGCCTCGTAACCTTCTAGAGGCCAGG
GATTCAAATCCCGGCGTAAGCGAGCTTTTTTCTTGCAAAGTGAGTTTTTC
TCTCGCTTCCGCTCCTGGCCTAGTGGATAGCGCTAGTTCGTGTGTACACA
GAGGAAAGAGAGTGCTGAACTCTTCTCGCATTAAAAATCGTAGGCAAAGT
ACCGCAGAAGGGGAGGGTAGAGAGGGGCTCTTCTGTGAGACCACGGGTTG
GAGTAAACGGCGCTAGTGCTGTGAACGCTGATTTGAAGTGAAGACAAAAA
AAAAATAATAATACTGCTGCTGCCAACTGCTGCTGCTGTACTACTGTAGT
CTTCTAACAATTACAGTTTAAGTTTTTTTCTCTGAGAACGCTTCATTTCG
CCTCTTTCGGCTTCTGTGAGCGCTCTATTCCGATCTTTTTGGGCTCTCAC
AGAGCAGCATTTCCTCTGGAAATTTGGCACTTTGGTGGACTTTCCCCTCT
TGTCTTCCACTTTTATCTCTCTCGCCTGCTGCTGTCGCCCCGCTCTGTAG
TACCATCATACCACGCATTCCACTCGAAGTACGGCCCTCTCCTCTGTGTG
TGCCTCCTTCTCCTCCGTTCCTCCGTCTCTCCATGTCTCTGACGGTCTGT
CTATCCACATTCTCTTTTCATTTTCGCCTTCTCTCTTGACCGCTCTCGCG
TCGGAATGGTCTGTTGTTTGTGCCGATGCCGTGTGCTACTGCGGGCTCTC
ACAGAGCAGCATTTATTTCCTCTGAAAATTTGGCACTTTGGTGGACTTTC
CCCTTTTATCTCCCGCTTTTATCTCTCTCGCCGGCTGCTGTCACCCCTCT
CTGTACCATCATACCACGCATTCCACTCGAAGTACGGCCCTCTCTGTGTG
TGCCTCCTTCTCCTCCGTTCCCCCGCTTCTCCATGTCTCTGACGGTCTGT
CTATCCACATTCTCTTTTCATTTTCGCCTTCTCTCTTGACCGCTCTCGTG
TCTCGTAATGGTCTGTTGTTTGTTCCGATTCCGTGTGCTACTAGTCTCCT
ACTGCTGTACATTTTTTTATTCTTCTGACACCTCACACGGTGTGCACTCA
CCTCCAATCACCTTGTACCGTATTCTCTCTCTCTCTCCTCTCGGTGTGTG
TGTGTGTCTTACTCTGTCTCTCTCCTCTCGGTGTGTGAGTGA
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Coding sequence (CDS) from alignment at chr_00:6561761..6564102+

>Ec-00_004790.1 ID=Ec-00_004790.1|Name=Ec-00_004790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=354bp|location=Sequence derived from alignment at chr_00:6561761..6564102+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTCTCAGCCTCCGGCTCTTTCGCGAGGAGGGGGACCAAGACACAC
AAGGTACTGCGCGCCGTGTCTCGCGCCCATCAGCGCGCAGCGGGGCCGCG
ACAGTGGCGCAGTGTGCGTGAGGAGGTGGCGGCGCAACCGGTTGCGGTAC
ACAAAGAATAGGTCAAATCGTCTTTTGGGGGGGCTGCTGCTGTGTGCAGC
TGCTGTGTGCAGCTGCTGTAGTCTGTCTGTTATAGAAACTTCGCGGCTAC
CAAACAATCCAGTGCTTTTTCCTTTCGCGTCCAGGAAGACCGAGGCGCAA
AAGACACTGTCCGCCGCGTCTCGCGCCCAGCGCCGCCGCGGTCATGGCAC
GTGA
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Synonyms
The feature 'Ec-00_004790.1' has the following synonyms
Synonym
Esi364_0035
Esi_364_0035