Ec-00_004780.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004780.1
Unique NameEc-00_004780.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length120
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_004780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6559298..6559657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length360
Hectar predicted targeting categoryother localisation
Gene idEc-00_004780.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004780Ec-00_004780Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6559298..6559657 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004780.1.1Ec-00_004780.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6559298..6559657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004780.1CDS:Ec-00_004780.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6559298..6559657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004780.1Ec-00_004780.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6559298..6559657 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004780.1 ID=Ec-00_004780.1|Name=Ec-00_004780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=120bp
MALESEATVWVDRMTLGEAATFLSGVNNAAEAGYDATEAGCAAPRMASRL
YEMAHRLRMQLQHYWGEWLWLRQHWRHGRNRPARQDETCLGRERKKRPRL
LDEQLLQGGGCKQHVELSS*
back to top

spliced messenger RNA

>Ec-00_004780.1 ID=Ec-00_004780.1|Name=Ec-00_004780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=360bp|location=Sequence derived from alignment at chr_00:6559298..6559657+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTGGAGTCGGAAGCCACAGTCTGGGTCGACCGGATGACGCTAGG
TGAAGCAGCAACTTTCCTTTCCGGCGTCAACAATGCCGCCGAAGCAGGGT
ATGACGCCACGGAAGCAGGGTGTGCAGCACCTCGGATGGCTTCGCGGTTG
TACGAGATGGCACACAGATTGAGGATGCAGCTGCAGCACTACTGGGGAGA
GTGGTTGTGGCTACGGCAGCATTGGCGTCATGGCCGAAATCGTCCAGCGC
GGCAGGATGAAACATGTCTAGGTCGTGAGCGGAAAAAACGGCCGAGACTG
CTGGATGAGCAGCTGCTCCAGGGGGGTGGTTGTAAACAGCACGTTGAACT
CTCGTCGTAG
back to top

protein sequence of Ec-00_004780.1

>Ec-00_004780.1 ID=Ec-00_004780.1|Name=Ec-00_004780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=120bp
MALESEATVWVDRMTLGEAATFLSGVNNAAEAGYDATEAGCAAPRMASRL
YEMAHRLRMQLQHYWGEWLWLRQHWRHGRNRPARQDETCLGRERKKRPRL
LDEQLLQGGGCKQHVELSS*
back to top

mRNA from alignment at chr_00:6559298..6559657+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004780.1 ID=Ec-00_004780.1|Name=Ec-00_004780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=360bp|location=Sequence derived from alignment at chr_00:6559298..6559657+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCACTGGAGTCGGAAGCCACAGTCTGGGTCGACCGGATGACGCTAGG
TGAAGCAGCAACTTTCCTTTCCGGCGTCAACAATGCCGCCGAAGCAGGGT
ATGACGCCACGGAAGCAGGGTGTGCAGCACCTCGGATGGCTTCGCGGTTG
TACGAGATGGCACACAGATTGAGGATGCAGCTGCAGCACTACTGGGGAGA
GTGGTTGTGGCTACGGCAGCATTGGCGTCATGGCCGAAATCGTCCAGCGC
GGCAGGATGAAACATGTCTAGGTCGTGAGCGGAAAAAACGGCCGAGACTG
CTGGATGAGCAGCTGCTCCAGGGGGGTGGTTGTAAACAGCACGTTGAACT
CTCGTCGTAG
back to top

Coding sequence (CDS) from alignment at chr_00:6559298..6559657+

>Ec-00_004780.1 ID=Ec-00_004780.1|Name=Ec-00_004780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=360bp|location=Sequence derived from alignment at chr_00:6559298..6559657+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCACTGGAGTCGGAAGCCACAGTCTGGGTCGACCGGATGACGCTAGG
TGAAGCAGCAACTTTCCTTTCCGGCGTCAACAATGCCGCCGAAGCAGGGT
ATGACGCCACGGAAGCAGGGTGTGCAGCACCTCGGATGGCTTCGCGGTTG
TACGAGATGGCACACAGATTGAGGATGCAGCTGCAGCACTACTGGGGAGA
GTGGTTGTGGCTACGGCAGCATTGGCGTCATGGCCGAAATCGTCCAGCGC
GGCAGGATGAAACATGTCTAGGTCGTGAGCGGAAAAAACGGCCGAGACTG
CTGGATGAGCAGCTGCTCCAGGGGGGTGGTTGTAAACAGCACGTTGAACT
CTCGTCGTAG
back to top
Synonyms
The feature 'Ec-00_004780.1' has the following synonyms
Synonym
Esi364_0034
Esi_364_0034