Ec-00_004720.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004720.1
Unique NameEc-00_004720.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length55
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_004720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6455098..6455584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length165
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_004720.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004720Ec-00_004720Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6455098..6455584 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004720.1.1Ec-00_004720.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6455098..6455128 +
Ec-00_004720.1.2Ec-00_004720.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6455314..6455393 +
Ec-00_004720.1.3Ec-00_004720.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6455531..6455584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004720.1CDS:Ec-00_004720.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6455098..6455128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004720.1Ec-00_004720.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6455098..6455584 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004720.1 ID=Ec-00_004720.1|Name=Ec-00_004720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=55bp
MGDNVQRITGDAMPGLPRFNHDHHTRGTTLSANKFTERFFARPECGGAPD
LAVA*
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spliced messenger RNA

>Ec-00_004720.1 ID=Ec-00_004720.1|Name=Ec-00_004720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=165bp|location=Sequence derived from alignment at chr_00:6455098..6455584+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGACAACGTGCAACGCATCACGGGAGATGCGATGCCTGGGTTGCC
CCGCTTCAATCATGATCACCACACACGAGGCACAACTTTATCCGCGAACA
AGTTCACCGAGCGGTTCTTCGCCCGCCCCGAGTGCGGGGGTGCCCCCGAT
CTAGCCGTTGCTTAG
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protein sequence of Ec-00_004720.1

>Ec-00_004720.1 ID=Ec-00_004720.1|Name=Ec-00_004720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=55bp
MGDNVQRITGDAMPGLPRFNHDHHTRGTTLSANKFTERFFARPECGGAPD
LAVA*
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mRNA from alignment at chr_00:6455098..6455584+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004720.1 ID=Ec-00_004720.1|Name=Ec-00_004720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=487bp|location=Sequence derived from alignment at chr_00:6455098..6455584+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGAGACAACGTGCAACGCATCACGGGAGGTGACGAACAATATGGGAA
TCATTTTTGAATAACCCCAGTCAGACTGCACCGTTCGACTGGAAAACAGA
GCAGCGGGCGGACGGTTGCGCTGGTTGTGTGCATTTAGTCCCAGCAGAGC
GGGATAACCTACCTCAAGTAACCCCGCGAAAACCTATGTGTCATTTCAAC
TTCCACGGGTTTCTAGATGCGATGCCTGGGTTGCCCCGCTTCAATCATGA
TCACCACACACGAGGCACAACTTTATCCGCGAACAAGTTCACCGAGGTAA
GCTATCGCGATCGTCTCTGGGGACCGTGTATTCACGCCCCGTGCGTGGTG
CCACCCCCTCCTGCATCTGTCACCCCGCCACCAAATCCCGCCACCGTCGT
CGCTGCCGCTTAATCGTACCATCTGCCATCCAGCGGTTCTTCGCCCGCCC
CGAGTGCGGGGGTGCCCCCGATCTAGCCGTTGCTTAG
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Coding sequence (CDS) from alignment at chr_00:6455098..6455584+

>Ec-00_004720.1 ID=Ec-00_004720.1|Name=Ec-00_004720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=165bp|location=Sequence derived from alignment at chr_00:6455098..6455584+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGAGACAACGTGCAACGCATCACGGGAGATGCGATGCCTGGGTTGCC
CCGCTTCAATCATGATCACCACACACGAGGCACAACTTTATCCGCGAACA
AGTTCACCGAGCGGTTCTTCGCCCGCCCCGAGTGCGGGGGTGCCCCCGAT
CTAGCCGTTGCTTAG
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Synonyms
The feature 'Ec-00_004720.1' has the following synonyms
Synonym
Esi361_0041
Esi_361_0041