Ec-00_004700.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004700.1
Unique NameEc-00_004700.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length63
Homology
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BLAST of Ec-00_004700.1 vs. uniprot
Match: D7FWS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS1_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.300e-37
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 3 
Query:    6 MVLYRQAANTVERWMGIRARTHMRCAVLATAAFVKANTWIRDYHRPSAHVRQKYPNGNHGGS 191
            MVLYRQAANTVERWMGIRARTHMRCAVLATAAFVKANTWIRDYHRPSAHVRQKYPNGNHGGS
Sbjct:    1 MVLYRQAANTVERWMGIRARTHMRCAVLATAAFVKANTWIRDYHRPSAHVRQKYPNGNHGGS 62
The following BLAST results are available for this feature:
BLAST of Ec-00_004700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWS1_ECTSI1.300e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6447412..6451429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length694
Hectar predicted targeting categoryother localisation
Gene idEc-00_004700.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004700Ec-00_004700Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6446890..6456996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004700.1Ec-00_004700.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6449433..6451423 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004700.1.4Ec-00_004700.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6447412..6447773 -
Ec-00_004700.1.3Ec-00_004700.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6449296..6449454 -
Ec-00_004700.1.2Ec-00_004700.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6450925..6451073 -
Ec-00_004700.1.1Ec-00_004700.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6451406..6451429 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0047003UTR:Ec-00_004700.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 6447412..6447773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004700.1CDS:Ec-00_004700.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6449433..6449454 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0047005UTR:Ec-00_004700.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 6451424..6451429 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004700.1 ID=Ec-00_004700.1|Name=Ec-00_004700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=63bp
MVLYRQAANTVERWMGIRARTHMRCAVLATAAFVKANTWIRDYHRPSAHV
RQKYPNGNHGGS*
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spliced messenger RNA

>Ec-00_004700.1 ID=Ec-00_004700.1|Name=Ec-00_004700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=694bp|location=Sequence derived from alignment at chr_00:6447412..6451429- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCGATGGTGCTGTATCGGCAGGCCGCGAACACCGTGGAAAGGTGGAT
GGGCATTCGAGCGCGGACCCATATGAGATGCGCAGTTCTGGCCACTGCCG
CTTTCGTGAAGGCGAACACGTGGATACGGGACTACCACCGGCCGTCCGCC
CATGTCCGTCAAAAATATCCAAACGGCAATCATGGCGGTTCGTAATGAGC
CTGTTCCCCAAGGCGAGACCGTGGAGCTCTGCTTCGAGGAGATGCTTCAG
CAGTCGAGTGCCAGATGAACTGTGTGCTACAGGACAAGGGCAAGAGCGTC
TATGAGCAATCTTCGAGGTTTTTCGTGGCCACGTCCCACCAACGGTCCGG
GCTTCGACGATGACGGTGTCAAAAATAGAGAACAAGGTGGCGATGGGTTT
GGCGGCGATGGCTCGGGCGGCGACCTAAGCACCAGCCTGGTATGGTCGAG
GCGTTCGAGCAGGGTGGGGGCGACGAGAATGTCGTGCTTGTTGGGGAGCG
CACCTACATAGAAATGACGGATGAAGGGGGGGGCAGCTCTTAGTGGTGTT
CGTGGTGCTGATTAATCATGCGGAATTGCACGTATGCCAGGCGCGAGAAA
AAATGACGAAATGAAGGTTGCCTTTCGTGCAGCCCGTGGATGATTTTTTT
TTTCGTCGCAGCTTTTTGGTTACGTTTCTAGATGTGTTTTCGGC
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protein sequence of Ec-00_004700.1

>Ec-00_004700.1 ID=Ec-00_004700.1|Name=Ec-00_004700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=63bp
MVLYRQAANTVERWMGIRARTHMRCAVLATAAFVKANTWIRDYHRPSAHV
RQKYPNGNHGGS*
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mRNA from alignment at chr_00:6447412..6451429-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004700.1 ID=Ec-00_004700.1|Name=Ec-00_004700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4018bp|location=Sequence derived from alignment at chr_00:6447412..6451429- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTGGCGATGGTGCTGTATCGGCAGGTAAGCGGAGCACAGGACCGATGTGG
TTTCATCGTGTGCTAAAGGGATACTAAAGCGTTTGTGCATATAGAAAATA
GTGCATACCCTGGCCGTGACATGTCCGTTATTCTTTATTTTTGCGTGTCT
TGTGTTTGGGGAGAGGTGTTTCGATATCCTTTTGTGGAAAGACGTGCTGG
GCGTTGACGTGTGGCTATAATTTTTCGGTCGGAGGGTTGGTTCGCCTCTC
ACGCTCCCGTCGTGCCTCTCCCCGTGCATGGGTATCCCTCGTTTGCCTCA
CGGCTCACTCTCTCCTCACCGTTGCTACCAATTGCCCGCCCCCCTCCGGC
ATTTAGGCCGCGAACACCGTGGAAAGGTGGATGGGCATTCGAGCGCGGAC
CCATATGAGATGCGCAGTTCTGGCCACTGCCGCTTTCGTGAAGGCGAACA
CGTGGATACGGGACTACCACCGGCCGTCCGCCCATGTCCGTCAAAAATAT
CCAAAGTGAGCGAACATGGCAGTCGTGGGAGCGTCATTTTAATTGTTGCT
GTAAGTGTTAGAATGTAAACATTATTTTACGAGCCCCCCCGGTAGCCGTG
TCAGCTGTACCCGCTTGACTGCAAAGTCCCTGCGCGCTCGTAGATTGACC
GTCCTCTGCATTTCACTGAAAACATATGTGTTGAGGACGTTGCCTAGGGC
TCCATCGTTGATTTCCTAACCCTAAGTGAGAACCGCCAGTTGGCGTGGTG
TGTGTCTCCCAAGAACGTCACCGTAAAACCTGGTAACGCAGTTTCCACTT
CAGCCGCATGTATGGCGGACGAGGCTTCGCCTCTTCCGGTTCGCTTCAGA
TATTTCCTCATCGTAGCACGTGCCCGCCTGTTGTGGGTGTGGCGTACGGT
CATGACCTCCTTGTATTGGCCACAATCATGCACTTGCTCAGGGATTTGGC
CGTGACATGTTTCGCCGATACACGGGCAGCGTCTCGGAATTTGGGTACAG
CCTGTTGTTGTCTCAATAGCGGTGCCCTGAATAACGGGATGCCCTGAATA
ACGGCATCGATATCGCTTGGCACAAATGCATCCTTCAATAGCGGTGTTAT
CCCGCTAGTGAGGGAGCTGCGGAGTCCCCCCGCCTTACTGACAAGATGAA
GAGGACGCCGATTCCGACGAGGAAGAGCTGAACGAGACGGGCGAGGTTGA
GAGTTTAGAGGGTAGGAAGTTGATGGCGCCGCCGCCGTACTAGGATCTGT
CGGAATTGTTCGGCCCACTAGATAACGCAGTACGCCCAGTCGTCTGGAAA
TGACGAGCCAGAGTATCTTCTTCGCAAGGCTAACATGTCGTTTCTCGCAG
CCCAGGCATGATTATTTTGTTTCTTCAATCATAGGCTCTTCGGGAAAGCA
CATCAGCATCAGTAGGAGTGCCTGCTTTTTTTTTCAATGTAGCTCCAAGT
GAACATGTTTTGTGTACACTTTGTTACTCTATTTGCACCTGTGGTTTATT
GATTCAACGTTGTGCTATTTAAGAAAGAAAGAGCACAACGGAAAGCAACA
ACCTTGCTACTGACGTCGGATAACAGAGTCCAGGCACCATCAGTGTGGTT
GATTCTGCAGGAAGGGATCAAATCCCATTACATCTGTACGGTTCGTTGCG
TTCCTACTATTCCGCTACCGGGGGCTTGGTATCCTAGAGGACAGCAGTGC
TGCACGATGGTGGTGGTATTTGACGTAGCTATGCGTACAATGAGTTGATG
TCTGGGTCTTCTTTTTTTTTTCATGCCGTTGTCTTTGCCAGATCAACTTT
TTGACGCGTGCATTTCGAACTGTTGTTTGCAATGCAGTTGAGTCCCTTAT
TGATTGGCGTTTGGTCTAGCAATGCGAGATTATTGCACAGGCCATAATGC
GACTAAATTTCCCCATATTCCTACCCCCCGCCGTGTCTTTCGCTATACCA
TACACCATGAACCGGATGGTGCAAGCGGCAATCATGGCGGTTCGTAATGA
GCCTGTTCCCCAAGGCGAGACCGTGGAGCTCTGCTTCGAGGAGATGCTTC
AGCAGTCGAGTGCCAGATGAACTGTGTGCTACAGGACAAGGGCAAGAGCG
TCTATGAGCAATCTTCGAGGTTTTTCGTGGCCACGTGAGTAACTGTTTCA
TGTGTGCTTGTGCCGCGTGCGACAAGCCGTTCTTGTGGGCTAAAAGGTTC
TACTGTTTGACTCTGACGGGTTGGTGCTTGGTCCTGTTTTTTTTCATCTG
TCGTTCGGGCGGGGGGGTTCCATGCACTACGAGTAGCAATCTTACGTCCT
ACATCGGTGTTTGCGCCCTCGCACAACAACTGAGTAGGATCTGGGAGATC
GTGTATCGGTTCCAGTTCGGCCCCGGCAGGATTGCCAGCAAACTTCTGGA
CAGTGTGTCTGCCCCCCTTCAGCTTCAGCATAGTGGATTACTTCAAAATT
CCAGCTCTTTATGTTTTTGTAGCTCAAGGTGTTTCCGTCTCGGTCCATAT
CCCTGCTTTATTGAGCCGAGGTTTTGGTAAGTGCGGGAACGTGTCCACTT
ATTTGTCAGGCCGCCTTGCAGTTTCGCTTTTCGAGACTCCCCACTCCGGC
CCGCCTACGTTGTTTGTTTGCCTCGCTCTAAAGTCGGAACCCTCCCTGAT
CAACCCACCTAACCCCCCGCCCCCCTTCATAGCTGTCGGGGTTGAGTGAC
ACCTGCTTGGTAATGACGTCGTAAAAGACGACGATACCATCGTGAGCTCA
ACCAATAAGGTTGCCGTTTTTTGTTTGCCCTTCGTTGTTTTTTTTTGTTT
TGCATCAAGTACGATGATGGTCGAGTAGATAATATTGTGCGTGGAACAAA
ACCCCACTAGTGGCGCAAAGGAGATGATCACAAAACGTCGCATTTATTAA
CCTCAAGCACCCAACGTGCACCTATTCGCAATGCTTGCAACGAACTGTCT
CTAGAATAGCAAACACCACCCTGGGAATTATGTCCTTCGCATCTGTCACC
CTTGTGCCAGAAAGTAAGTAAAAGTTGCCAAACATCCTTTGCGGTCTGCA
GCGAACCGTACATACGACTCGATATCTCACAGCGCTTCGCGCTTGGGTCT
TGCGAGCCTGGTCCGGTGAGAACCCGGTTCGCTCATTCCCGGATTCTAAC
GGATGCAAGGTAACTTCATCTGACGACTACGGCATGCACGGTTACGAGTA
CCATCTCCTGAGGAATACTCCGGCCTAGTGGCAGCGAAACGCCGCATGTC
GACATATTTTTCCATGAGCATTATTTCACCAACAAGAATTCCTCCCCGAC
CGGAACTCAGACCGAATACCAAACGTACATGGCTACTACCTAGAGATTCA
CAATCGTTTTGCGACTATGTGTAATGGTGATTATCCGAGTGCCTTCGTCC
TGCCTGTGAGAGAACAGCACAAGTATTCGAACATCGAATGTATCAGCTCG
TGGTAGCTATCACTTCGTCGTGAACATATTTGAACTAGTGTGGGCAATTT
CGCGCGCGTTCGCAAGCAGCGAAGCCAATATGGTGCGCGCGAAGTCTCCC
ATTCCCCCACGTCACTCCGTTAAATAAACTAATTCTTTTGGTGCCAGTTG
TGTTCCGTGCTGGCTCACTCGCCAAACCCCCTTCTCCAAACCTGCGGTAC
ACCCAGGTCCCACCAACGGTCCGGGCTTCGACGATGACGGTGTCAAAAAT
AGAGAACAAGGTGGCGATGGGTTTGGCGGCGATGGCTCGGGCGGCGACCT
AAGCACCAGCCTGGTATGGTCGAGGCGTTCGAGCAGGGTGGGGGCGACGA
GAATGTCGTGCTTGTTGGGGAGCGCACCTACATAGAAATGACGGATGAAG
GGGGGGGCAGCTCTTAGTGGTGTTCGTGGTGCTGATTAATCATGCGGAAT
TGCACGTATGCCAGGCGCGAGAAAAAATGACGAAATGAAGGTTGCCTTTC
GTGCAGCCCGTGGATGATTTTTTTTTTCGTCGCAGCTTTTTGGTTACGTT
TCTAGATGTGTTTTCGGC
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Coding sequence (CDS) from alignment at chr_00:6447412..6451429-

>Ec-00_004700.1 ID=Ec-00_004700.1|Name=Ec-00_004700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=189bp|location=Sequence derived from alignment at chr_00:6447412..6451429- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGCTGTATCGGCAGGCCGCGAACACCGTGGAAAGGTGGATGGGCAT
TCGAGCGCGGACCCATATGAGATGCGCAGTTCTGGCCACTGCCGCTTTCG
TGAAGGCGAACACGTGGATACGGGACTACCACCGGCCGTCCGCCCATGTC
CGTCAAAAATATCCAAACGGCAATCATGGCGGTTCGTAA
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Synonyms
The feature 'Ec-00_004700.1' has the following synonyms
Synonym
Esi0361_0029
Esi_0361_0029