Ec-00_004690.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_004690.3 vs. uniprot
Match: D7FWS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS2_ECTSI) HSP 1 Score: 620 bits (1598), Expect = 3.620e-207 Identity = 422/814 (51.84%), Postives = 464/814 (57.00%), Query Frame = 2 Query: 179 PPAGGKEKKNTESTRKCRFVKAIKENIDSSARSHADTFGMSFEQAQKDAYKGVMTHENADKLFTTSARQKRTNTTPSCRPCATCGQS*AGRASLQVREGIRYGEQWWASSALPVLPWRPPSPS*-----EEPSKRRRTRRPGNDERRR*RTTISAKWRANENKDRTTWRTFTRSRWPGLGKASRSAHSRHRAKRRRSTTARRGTISGRTQITPSFVCAPSCAKHTEFPT*WGPNYSSTTLAWKISRQLRTGPCRSGVDLQ-EVIRGHHTLLRSGTVTSLLPLC------ALLQGEASHGFPCQD---------VADAPPRRNNGSCLLVHLRPVLLGRGL*GIPAVFLAQGGLQHGQVKRQT------------HVRQNLPLHSYRQRKG---------------HQCTLIGLRI---------GELPAVQGKAGPFLWLPSE*RGYRPGLG-ARFYLFLDHPSCRTNVG---WDRRVEYVRHGR*SGACSGA*P*ERG-KCGRRRREXXXXRGRGQTKTEEGVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVCDHQLPPTGKDRPIPDDRSTLVVQISLVFS 2434 P K +KNTESTRKCRFVKAIKENIDSSARSHADTFGMSFEQAQKDAYKGVMTHE ++ + K+ + +G + + G P + + E+ K+ R RR A +N D + R L A +R R +I RTQ +P C T+ G +R+ S V ++ E+ + H GT L C A QG G + V + PR SCL VH L ++ L HG+ ++ LP S ++ + T G I G P + + F P G LG A HP+ RT+ G W GR G RG G XXXX ++GVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVL+DDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVCDHQLPPTGKDRPIPDDRSTLVVQISLVFS Sbjct: 54 PQQAAKRRKNTESTRKCRFVKAIKENIDSSARSHADTFGMSFEQAQKDAYKGVMTHEICRQVVHDECKAKKNEHHAVVQAVRDVWSIVSGSSVVASAGGYSLRRTMVGIIGSPRVSFEAAKSFLGGTLKEKTYKKARERRE----------------EALKNNDFGKMAGKRKQRSDNLEDLYPFAMARVRE-----------SIEERTQPSP-------CETKTKHDRAKG-------------NHIRSDADNSLVCVRPELCQTHGISYMMGTQLQLYNSCMEDLQAAFEQGHVEVGSISKKSFEDIIPFYVVEQSPR----SCLCVHCYKAKLAT-----VSLVKMWPTLHHGETTGAACSCTCDLCSSAGGCKEFLPYSSPKEVSSMGKLSDKLMCDKIFLYTATGNGKAISAHSSVCVSGNCPRCKERQDRFFGCPRNRGGIDRDLGPASTSSSTIHPAGRTSGGTVEWSMFDTVDEAGRAVGPSR-----RRGANAGGDXXXXXXXXXXXXXXPKKGVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLTDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVCDHQLPPTGKDRPIPDDRSTLVVQISLVFS 806
BLAST of Ec-00_004690.3 vs. uniprot
Match: D7G3S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S2_ECTSI) HSP 1 Score: 348 bits (894), Expect = 7.410e-104 Identity = 175/290 (60.34%), Postives = 219/290 (75.52%), Query Frame = 2 Query: 1544 TKTEEGVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVCDHQLPPTGKDRPIPDDRSTLVV 2413 ++ ++ V K GTVD+F +E ++I Y HRRQ+H+QRS F+ETL TLEEG VVFV DFQEQLQL EQDEVQ+QHWQHESVTIFP PIYFK +GRVW YSFQVLSDDRTQD+ WVQ+VM ++L+ HVP L+RK+GA M AI FTDNCAKQFKCRFHFGW+A VM+ D++G +T++ + +EHHYFGSCHGKS+SDSEGA TK R N++N SWVV++P HLC LL + F+L E + DEA F ++ SRGG QLL+TKV G+ R D+R TL++ Sbjct: 380 SRPKKAVATKTGTVDDFTKEFKDIFRRYIPHRRQYHNQRSAFHETLRTLEEGTVVFVFDFQEQLQLIEQDEVQAQHWQHESVTIFPCPIYFKWKGRVWSYSFQVLSDDRTQDHAWVQHVMFKILTEHVPALMRKLGAPAMVLAIFFTDNCAKQFKCRFHFGWLASRAVMVCDTNGESTNVPVHIEHHYFGSCHGKSSSDSEGANTKGVTRHNIINQSWVVQSPRHLCTLLGESMDFMLLEPTEDEAMTFETARTSSRGGDQLLMTKVWG------GESRS--DERKTLLI 661
BLAST of Ec-00_004690.3 vs. uniprot
Match: D7FXZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ3_ECTSI) HSP 1 Score: 302 bits (773), Expect = 2.140e-83 Identity = 146/272 (53.68%), Postives = 195/272 (71.69%), Query Frame = 2 Query: 1532 GRGQTKTEEGVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGG-QQLLVTKV 2344 G + +T V K GTVDEF E+++ + + KHRR + QR+ F E T+EEG+V+ +VDFQE+LQ+ EQDEVQSQHW E+ TIFP PI+FK+ GRVW YSFQ+LSDD QDN WVQ+VM++LL+ +P LLRK+GA PMT+ I+TDNCAKQFKCRFHFGWVA + +M D DG T +R+ +EHHYFG+CHGK+ SD+EG +TK R ++N W V + LCE L K +F L+ A+ +E + F++D++ GG +QLLVTK Sbjct: 516 GGSKRRTRRAVAEKTGTVDEFMAELKDHRASFGKHRRSYKTQRAAFTEKKLTIEEGEVLCIVDFQERLQVGEQDEVQSQHWDREATTIFPCPIFFKVDGRVWAYSFQILSDDMAQDNAWVQFVMSKLLNEDIPALLRKIGAKPMTRCTIWTDNCAKQFKCRFHFGWVADAQIMGLDKDGEPTGIRVHMEHHYFGACHGKNVSDAEGGMTKEYVRRMILNMMWRVASSRDLCEKLEKALNFFLRFANGEETEAFWKDRNGREGGTEQLLVTKT 787
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5K4U5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U5_9PHAE) HSP 1 Score: 254 bits (649), Expect = 1.610e-66 Identity = 123/214 (57.48%), Postives = 152/214 (71.03%), Query Frame = 2 Query: 1706 VFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVC 2347 VFV DFQEQL+L EQDEVQSQHWQHE VTIFP PI+ K +GR DN WVQ+VM ++++ HVP L+RK+GA M +AI FTDNCAKQFKCRFHFGW+A VMIRD++G +T++ + VEHHYFGSCHG S SDSEGA TK R N++N +WVV+ P HL LL + F+L+E + +E F ++ SRGG QLLVTK C Sbjct: 453 VFVFDFQEQLKLMEQDEVQSQHWQHERVTIFPCPIHCKWKGR---------------DNAWVQHVMFKIMTEHVPALMRKLGAPAMVRAIFFTDNCAKQFKCRFHFGWLASHEVMIRDNNGGSTNVPVHVEHHYFGSCHGNSGSDSEGANTKSTTRQNIINQTWVVQGPRHLSTLLGESMDFILEEPTEEEEMIFEASRTSSRGGDQLLVTKTC 651
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5L1G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G9_9PHAE) HSP 1 Score: 215 bits (548), Expect = 6.360e-57 Identity = 114/231 (49.35%), Postives = 136/231 (58.87%), Query Frame = 2 Query: 1652 HQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKV 2344 H T TLEEG VV+V DFQEQ QL EQDEVQSQHWQH+SVTIF PIY K + R+W YS+QVLSDDRTQDN W A P + FTDNCAKQFKCRFHFGW+A VMIRD+ G +T++ + VEHHYFGSCHGKS V+ P HLC LL + F+L+E + +E F ++ SR G QLL+TK+ Sbjct: 6 HPTERIQRTSLTLEEGTVVYVFDFQEQRQLMEQDEVQSQHWQHDSVTIFRCPIYLKWKARMWAYSYQVLSDDRTQDNAW---------------------ALPPWCELFFTDNCAKQFKCRFHFGWLASYEVMIRDNHGESTNVPVHVEHHYFGSCHGKS-----------------------VQGPRHLCTLLGESMDFILEEPTEEEEIIFEASRTSSRRGDQLLMTKI 192
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5JXK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK3_9PHAE) HSP 1 Score: 210 bits (535), Expect = 6.810e-57 Identity = 115/244 (47.13%), Postives = 144/244 (59.02%), Query Frame = 2 Query: 1709 FVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAA---PMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGK-----------------------------SNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKV 2344 F + QE+LQL EQDEVQ QHWQHE+VTIFP PIYFK +GRVW YSFQVLSD R ++VGAA M +AI FTDNCAKQFKCRFHFGW+A V+IRD++G +T++ + VEHH+FGSCHGK S SD +GA TK N++N +WVV+ P HLC LL + F+L+E + +E F + SRGG QLL+TK+ Sbjct: 29 FRLRLQEKLQLMEQDEVQLQHWQHENVTIFPCPIYFKWKGRVWAYSFQVLSDYRKSG--------------------QRVGAACAPTMMRAIFFTDNCAKQFKCRFHFGWLASHEVIIRDNNGGSTNVPVHVEHHHFGSCHGKRDDXFAITTAGLPTYQCMWSITTLGAATGSGSDIKGANTKGTTTQNIINQTWVVQGPRHLCTLLGEAMDFILEEPTEEEEMIFEASSTSSRGGDQLLMTKL 252
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5KFD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD4_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.090e-45 Identity = 92/179 (51.40%), Postives = 116/179 (64.80%), Query Frame = 2 Query: 1808 IYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKV 2344 IYFK +GRVW SFQVLSDDRTQDN W Q VM +L++ HVP L+RK+GA M +AI FTDNCAK+FKCR HFGW+A V+IRD +G +T++ + EHHYFGSCHGKS V++P HLC LL + F+L+E + +E F ++ S GG QLLVT V Sbjct: 120 IYFKWKGRVWANSFQVLSDDRTQDNAWAQDVMFKLMTEHVPVLMRKLGAPAMVRAIFFTDNCAKRFKCRLHFGWLASHEVIIRDINGESTNVPVHAEHHYFGSCHGKS-----------------------VQSPRHLCTLLGESVDFILEEPTKEEMT-FEASRTSSSGGDQLLVTTV 274
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5JLV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV8_9PHAE) HSP 1 Score: 145 bits (366), Expect = 8.000e-36 Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = 1 Query: 409 VQAVRDVWSIVSGSSVVASAGGYSLRRTMVGIIGSPRVTLEAAKSFLGGTLKEKTYKKARERREEALKNNDFGKMAGKRKQRSDNLEDLYPFAMARVRESIEERTQPSPCETKTKHD-RAKGNHIRSDADNSLVCVRPELCQTHGISYMMGTQLQLYNSCMEDLQAA 906 V+A+ ++W+ V+ VVA+ GY RR ++G I S V A F+GG+L + +A+ RE AL + D K++G K+RSDNL+ P A R +S E TQP P TKT HD R +G+HIRSDADNSLVCV PE C+TH + Y+ GT+ L+ CM+DLQAA Sbjct: 49 VEAITEIWANVNQPHVVATLPGYKARRAILGAIASNHVKYSTACEFVGGSLSRAAFNEAKAPRETALADGDMSKLSGTSKERSDNLQKKSPMACGRE-QSFAEHTQPFPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHPVYYITGTRDHLFRQCMDDLQAA 214
BLAST of Ec-00_004690.3 vs. uniprot
Match: UPI000B45A240 (uncharacterized protein LOC110453517 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45A240) HSP 1 Score: 81.6 bits (200), Expect = 4.670e-12 Identity = 59/192 (30.73%), Postives = 86/192 (44.79%), Query Frame = 2 Query: 1655 QRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQ---VLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHL 2221 Q+ F+ + T+ VV +DF E S Q+EVQS HW H SVTI P Y++ G Q V D Q + L + H L+ V + + I TD C+ Q+K + F ++ + D VE H++GS HGK SD GA+ K + + +VM + V+ N E L Sbjct: 374 QQVQFSGLVKTVPPNWVVLNMDFSENYSCSNQNEVQSAHWGHNSVTIHPTVAYYQCPGEECVDVVQEAMVFVSDDLQHDAHAVAKFTSLANEH----LQNVRGLTIEREIQLTDGCSAQYKSKTPFTDISFAN----------HDHGFPVERHFYGSRHGKGPSDGAGAVVKSSAKRSVMGMNSVINNAEDL 551
BLAST of Ec-00_004690.3 vs. uniprot
Match: D7FH41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH41_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 1.750e-10 Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 Query: 2617 VVEGDDGAESRKTFLLTKKKNTLLGRKYLFVRQGDIPEAFRA 2742 V + +DGAESRK FLLTKKKNTLLGR YL VRQGDIP+ FRA Sbjct: 41 VSQAEDGAESRKNFLLTKKKNTLLGRTYLIVRQGDIPDTFRA 82 The following BLAST results are available for this feature:
BLAST of Ec-00_004690.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=117bpback to top spliced messenger RNA >Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2780bp|location=Sequence derived from alignment at chr_00:6439230..6445763- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. AACTTACCGCGTGGTGGACTATGTTGTCAGTTCGTGACGTCGCCGCCGGCback to top protein sequence of Ec-00_004690.3 >Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=117bp MPTSCSRRVQGKKERTPRRRAGRARRVVNRERVERRCKCGRVFATENNGGback to top mRNA from alignment at chr_00:6439230..6445763- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6534bp|location=Sequence derived from alignment at chr_00:6439230..6445763- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:6439230..6445763- >Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=351bp|location=Sequence derived from alignment at chr_00:6439230..6445763- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_004690.3' has the following synonyms
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