Ec-00_004690.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004690.3
Unique NameEc-00_004690.3
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length117
Homology
BLAST of Ec-00_004690.3 vs. uniprot
Match: D7FWS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS2_ECTSI)

HSP 1 Score: 620 bits (1598), Expect = 3.620e-207
Identity = 422/814 (51.84%), Postives = 464/814 (57.00%), Query Frame = 2
Query:  179 PPAGGKEKKNTESTRKCRFVKAIKENIDSSARSHADTFGMSFEQAQKDAYKGVMTHENADKLFTTSARQKRTNTTPSCRPCATCGQS*AGRASLQVREGIRYGEQWWASSALPVLPWRPPSPS*-----EEPSKRRRTRRPGNDERRR*RTTISAKWRANENKDRTTWRTFTRSRWPGLGKASRSAHSRHRAKRRRSTTARRGTISGRTQITPSFVCAPSCAKHTEFPT*WGPNYSSTTLAWKISRQLRTGPCRSGVDLQ-EVIRGHHTLLRSGTVTSLLPLC------ALLQGEASHGFPCQD---------VADAPPRRNNGSCLLVHLRPVLLGRGL*GIPAVFLAQGGLQHGQVKRQT------------HVRQNLPLHSYRQRKG---------------HQCTLIGLRI---------GELPAVQGKAGPFLWLPSE*RGYRPGLG-ARFYLFLDHPSCRTNVG---WDRRVEYVRHGR*SGACSGA*P*ERG-KCGRRRREXXXXRGRGQTKTEEGVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVCDHQLPPTGKDRPIPDDRSTLVVQISLVFS 2434
            P    K +KNTESTRKCRFVKAIKENIDSSARSHADTFGMSFEQAQKDAYKGVMTHE   ++     + K+       +         +G + +    G             P + +            E+  K+ R RR                  A +N D        + R   L      A +R R            +I  RTQ +P       C   T+     G               +R+    S V ++ E+ + H      GT   L   C      A  QG    G   +          V +  PR    SCL VH     L        ++      L HG+                   ++ LP  S ++                  +  T  G  I         G  P  + +   F   P    G    LG A       HP+ RT+ G   W         GR  G         RG   G     XXXX        ++GVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVL+DDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVCDHQLPPTGKDRPIPDDRSTLVVQISLVFS
Sbjct:   54 PQQAAKRRKNTESTRKCRFVKAIKENIDSSARSHADTFGMSFEQAQKDAYKGVMTHEICRQVVHDECKAKKNEHHAVVQAVRDVWSIVSGSSVVASAGGYSLRRTMVGIIGSPRVSFEAAKSFLGGTLKEKTYKKARERRE----------------EALKNNDFGKMAGKRKQRSDNLEDLYPFAMARVRE-----------SIEERTQPSP-------CETKTKHDRAKG-------------NHIRSDADNSLVCVRPELCQTHGISYMMGTQLQLYNSCMEDLQAAFEQGHVEVGSISKKSFEDIIPFYVVEQSPR----SCLCVHCYKAKLAT-----VSLVKMWPTLHHGETTGAACSCTCDLCSSAGGCKEFLPYSSPKEVSSMGKLSDKLMCDKIFLYTATGNGKAISAHSSVCVSGNCPRCKERQDRFFGCPRNRGGIDRDLGPASTSSSTIHPAGRTSGGTVEWSMFDTVDEAGRAVGPSR-----RRGANAGGDXXXXXXXXXXXXXXPKKGVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLTDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVCDHQLPPTGKDRPIPDDRSTLVVQISLVFS 806          
BLAST of Ec-00_004690.3 vs. uniprot
Match: D7G3S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S2_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 7.410e-104
Identity = 175/290 (60.34%), Postives = 219/290 (75.52%), Query Frame = 2
Query: 1544 TKTEEGVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVCDHQLPPTGKDRPIPDDRSTLVV 2413
            ++ ++ V  K GTVD+F +E ++I   Y  HRRQ+H+QRS F+ETL TLEEG VVFV DFQEQLQL EQDEVQ+QHWQHESVTIFP PIYFK +GRVW YSFQVLSDDRTQD+ WVQ+VM ++L+ HVP L+RK+GA  M  AI FTDNCAKQFKCRFHFGW+A   VM+ D++G +T++ + +EHHYFGSCHGKS+SDSEGA TK   R N++N SWVV++P HLC LL +   F+L E + DEA  F   ++ SRGG QLL+TKV        G+ R   D+R TL++
Sbjct:  380 SRPKKAVATKTGTVDDFTKEFKDIFRRYIPHRRQYHNQRSAFHETLRTLEEGTVVFVFDFQEQLQLIEQDEVQAQHWQHESVTIFPCPIYFKWKGRVWSYSFQVLSDDRTQDHAWVQHVMFKILTEHVPALMRKLGAPAMVLAIFFTDNCAKQFKCRFHFGWLASRAVMVCDTNGESTNVPVHIEHHYFGSCHGKSSSDSEGANTKGVTRHNIINQSWVVQSPRHLCTLLGESMDFMLLEPTEDEAMTFETARTSSRGGDQLLMTKVWG------GESRS--DERKTLLI 661          
BLAST of Ec-00_004690.3 vs. uniprot
Match: D7FXZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ3_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 2.140e-83
Identity = 146/272 (53.68%), Postives = 195/272 (71.69%), Query Frame = 2
Query: 1532 GRGQTKTEEGVVVKRGTVDEFFEEVREIQGVYRKHRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGG-QQLLVTKV 2344
            G  + +T   V  K GTVDEF  E+++ +  + KHRR +  QR+ F E   T+EEG+V+ +VDFQE+LQ+ EQDEVQSQHW  E+ TIFP PI+FK+ GRVW YSFQ+LSDD  QDN WVQ+VM++LL+  +P LLRK+GA PMT+  I+TDNCAKQFKCRFHFGWVA + +M  D DG  T +R+ +EHHYFG+CHGK+ SD+EG +TK   R  ++N  W V +   LCE L K  +F L+ A+ +E + F++D++   GG +QLLVTK 
Sbjct:  516 GGSKRRTRRAVAEKTGTVDEFMAELKDHRASFGKHRRSYKTQRAAFTEKKLTIEEGEVLCIVDFQERLQVGEQDEVQSQHWDREATTIFPCPIFFKVDGRVWAYSFQILSDDMAQDNAWVQFVMSKLLNEDIPALLRKIGAKPMTRCTIWTDNCAKQFKCRFHFGWVADAQIMGLDKDGEPTGIRVHMEHHYFGACHGKNVSDAEGGMTKEYVRRMILNMMWRVASSRDLCEKLEKALNFFLRFANGEETEAFWKDRNGREGGTEQLLVTKT 787          
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5K4U5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U5_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.610e-66
Identity = 123/214 (57.48%), Postives = 152/214 (71.03%), Query Frame = 2
Query: 1706 VFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKVC 2347
            VFV DFQEQL+L EQDEVQSQHWQHE VTIFP PI+ K +GR               DN WVQ+VM ++++ HVP L+RK+GA  M +AI FTDNCAKQFKCRFHFGW+A   VMIRD++G +T++ + VEHHYFGSCHG S SDSEGA TK   R N++N +WVV+ P HL  LL +   F+L+E + +E   F   ++ SRGG QLLVTK C
Sbjct:  453 VFVFDFQEQLKLMEQDEVQSQHWQHERVTIFPCPIHCKWKGR---------------DNAWVQHVMFKIMTEHVPALMRKLGAPAMVRAIFFTDNCAKQFKCRFHFGWLASHEVMIRDNNGGSTNVPVHVEHHYFGSCHGNSGSDSEGANTKSTTRQNIINQTWVVQGPRHLSTLLGESMDFILEEPTEEEEMIFEASRTSSRGGDQLLVTKTC 651          
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5L1G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G9_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 6.360e-57
Identity = 114/231 (49.35%), Postives = 136/231 (58.87%), Query Frame = 2
Query: 1652 HQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKV 2344
            H       T  TLEEG VV+V DFQEQ QL EQDEVQSQHWQH+SVTIF  PIY K + R+W YS+QVLSDDRTQDN W                     A P    + FTDNCAKQFKCRFHFGW+A   VMIRD+ G +T++ + VEHHYFGSCHGKS                       V+ P HLC LL +   F+L+E + +E   F   ++ SR G QLL+TK+
Sbjct:    6 HPTERIQRTSLTLEEGTVVYVFDFQEQRQLMEQDEVQSQHWQHDSVTIFRCPIYLKWKARMWAYSYQVLSDDRTQDNAW---------------------ALPPWCELFFTDNCAKQFKCRFHFGWLASYEVMIRDNHGESTNVPVHVEHHYFGSCHGKS-----------------------VQGPRHLCTLLGESMDFILEEPTEEEEIIFEASRTSSRRGDQLLMTKI 192          
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5JXK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK3_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 6.810e-57
Identity = 115/244 (47.13%), Postives = 144/244 (59.02%), Query Frame = 2
Query: 1709 FVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAA---PMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGK-----------------------------SNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKV 2344
            F +  QE+LQL EQDEVQ QHWQHE+VTIFP PIYFK +GRVW YSFQVLSD R                       ++VGAA    M +AI FTDNCAKQFKCRFHFGW+A   V+IRD++G +T++ + VEHH+FGSCHGK                             S SD +GA TK     N++N +WVV+ P HLC LL +   F+L+E + +E   F    + SRGG QLL+TK+
Sbjct:   29 FRLRLQEKLQLMEQDEVQLQHWQHENVTIFPCPIYFKWKGRVWAYSFQVLSDYRKSG--------------------QRVGAACAPTMMRAIFFTDNCAKQFKCRFHFGWLASHEVIIRDNNGGSTNVPVHVEHHHFGSCHGKRDDXFAITTAGLPTYQCMWSITTLGAATGSGSDIKGANTKGTTTQNIINQTWVVQGPRHLCTLLGEAMDFILEEPTEEEEMIFEASSTSSRGGDQLLMTKL 252          
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5KFD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD4_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.090e-45
Identity = 92/179 (51.40%), Postives = 116/179 (64.80%), Query Frame = 2
Query: 1808 IYFKMRGRVWCYSFQVLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHLCELLAKEFSFLLQEASPDEADRFYEDKSHSRGGQQLLVTKV 2344
            IYFK +GRVW  SFQVLSDDRTQDN W Q VM +L++ HVP L+RK+GA  M +AI FTDNCAK+FKCR HFGW+A   V+IRD +G +T++ +  EHHYFGSCHGKS                       V++P HLC LL +   F+L+E + +E   F   ++ S GG QLLVT V
Sbjct:  120 IYFKWKGRVWANSFQVLSDDRTQDNAWAQDVMFKLMTEHVPVLMRKLGAPAMVRAIFFTDNCAKRFKCRLHFGWLASHEVIIRDINGESTNVPVHAEHHYFGSCHGKS-----------------------VQSPRHLCTLLGESVDFILEEPTKEEMT-FEASRTSSSGGDQLLVTTV 274          
BLAST of Ec-00_004690.3 vs. uniprot
Match: A0A6H5JLV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 8.000e-36
Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  409 VQAVRDVWSIVSGSSVVASAGGYSLRRTMVGIIGSPRVTLEAAKSFLGGTLKEKTYKKARERREEALKNNDFGKMAGKRKQRSDNLEDLYPFAMARVRESIEERTQPSPCETKTKHD-RAKGNHIRSDADNSLVCVRPELCQTHGISYMMGTQLQLYNSCMEDLQAA 906
            V+A+ ++W+ V+   VVA+  GY  RR ++G I S  V    A  F+GG+L    + +A+  RE AL + D  K++G  K+RSDNL+   P A  R  +S  E TQP P  TKT HD R +G+HIRSDADNSLVCV PE C+TH + Y+ GT+  L+  CM+DLQAA
Sbjct:   49 VEAITEIWANVNQPHVVATLPGYKARRAILGAIASNHVKYSTACEFVGGSLSRAAFNEAKAPRETALADGDMSKLSGTSKERSDNLQKKSPMACGRE-QSFAEHTQPFPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHPVYYITGTRDHLFRQCMDDLQAA 214          
BLAST of Ec-00_004690.3 vs. uniprot
Match: UPI000B45A240 (uncharacterized protein LOC110453517 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45A240)

HSP 1 Score: 81.6 bits (200), Expect = 4.670e-12
Identity = 59/192 (30.73%), Postives = 86/192 (44.79%), Query Frame = 2
Query: 1655 QRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKMRGRVWCYSFQ---VLSDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQSGVMIRDSDGNATDMRLVVEHHYFGSCHGKSNSDSEGAITKLAERTNVMNGSWVVRNPEHL 2221
            Q+  F+  + T+    VV  +DF E    S Q+EVQS HW H SVTI P   Y++  G       Q   V   D  Q +         L + H    L+ V    + + I  TD C+ Q+K +  F  ++ +            D    VE H++GS HGK  SD  GA+ K + + +VM  + V+ N E L
Sbjct:  374 QQVQFSGLVKTVPPNWVVLNMDFSENYSCSNQNEVQSAHWGHNSVTIHPTVAYYQCPGEECVDVVQEAMVFVSDDLQHDAHAVAKFTSLANEH----LQNVRGLTIEREIQLTDGCSAQYKSKTPFTDISFAN----------HDHGFPVERHFYGSRHGKGPSDGAGAVVKSSAKRSVMGMNSVINNAEDL 551          
BLAST of Ec-00_004690.3 vs. uniprot
Match: D7FH41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH41_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.750e-10
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1
Query: 2617 VVEGDDGAESRKTFLLTKKKNTLLGRKYLFVRQGDIPEAFRA 2742
            V + +DGAESRK FLLTKKKNTLLGR YL VRQGDIP+ FRA
Sbjct:   41 VSQAEDGAESRKNFLLTKKKNTLLGRTYLIVRQGDIPDTFRA 82          
The following BLAST results are available for this feature:
BLAST of Ec-00_004690.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWS2_ECTSI3.620e-20751.84Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3S2_ECTSI7.410e-10460.34Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FXZ3_ECTSI2.140e-8353.68Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K4U5_9PHAE1.610e-6657.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L1G9_9PHAE6.360e-5749.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXK3_9PHAE6.810e-5747.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFD4_9PHAE2.090e-4551.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLV8_9PHAE8.000e-3647.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000B45A2404.670e-1230.73uncharacterized protein LOC110453517 n=1 Tax=Mizuh... [more]
D7FH41_ECTSI1.750e-1078.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6439230..6445763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2780
Hectar predicted targeting categoryother localisation
Gene idEc-00_004690.3
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004690Ec-00_004690Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6437361..6445763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004690.3Ec-00_004690.3Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6442036..6442723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004690.3.5Ec-00_004690.3.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6439230..6440447 -
Ec-00_004690.3.4Ec-00_004690.3.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6440848..6441501 -
Ec-00_004690.3.3Ec-00_004690.3.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6441831..6442104 -
Ec-00_004690.3.2Ec-00_004690.3.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6442442..6442873 -
Ec-00_004690.3.1Ec-00_004690.3.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6445562..6445763 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0046903UTR:Ec-00_004690.3Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 6439230..6440447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004690.3CDS:Ec-00_004690.3Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6442036..6442104 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0046905UTR:Ec-00_004690.3Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 6442724..6442873 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=117bp
MPTSCSRRVQGKKERTPRRRAGRARRVVNRERVERRCKCGRVFATENNGG
HHRLSPCYLGGRQVLPRRNPQREDVQEGQGTTRGGAKEQRFRQNGGQTKT
KIGQPGGPLPVRDGQG*
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spliced messenger RNA

>Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2780bp|location=Sequence derived from alignment at chr_00:6439230..6445763- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AACTTACCGCGTGGTGGACTATGTTGTCAGTTCGTGACGTCGCCGCCGGC
CGGTTGTCGGGCGAACACCGGACACAAGCCACACTTTTTGCGACGCCCTC
GCCTGCCAACGTTGGTGCAACGTCCCCGCCGACACCACTGGGTCGCCTAG
ACATCAACACCCCACCACAACCCGCCGACCCCCAGCAGGCGGCAAAGAGA
AGGAAGAACACCGAATCCACAAGAAAGTGCCGGTTTGTGAAAGCCATCAA
GGAAAACATCGACTCAAGTGCAAGGAGCCATGCGGATACGTTTGGGATGT
CCTTCGAACAAGCACAAAAAGACGCCTACAAGGGCGTCATGACCCACGAG
ATATGCCGACAAGTTGTTCACGACGAGTGCAAGGCAAAAAAGAACGAACA
CCACGCCGTCGTGCAGGCCGTGCGCGACGTGTGGTCAATCGTGAGCGGGT
CGAGCGTCGTTGCAAGTGCGGGAGGGTATTCGCTACGGAGAACAATGGTG
GGCATCATCGGCTCTCCCCGTGTTACCTTGGAGGCCGCCAAGTCCTTCCT
AGGAGGAACCCTCAAAGAGAAGACGTACAAGAAGGCCAGGGAACGACGAG
AGGAGGCGCTAAAGAACAACGATTTCGGCAAAATGGCGGGCAAACGAAAA
CAAAGATCGGACAACCTGGAGGACCTTTACCCGTTCGCGATGGCCAGGGT
TAGGGAAAGCATCGAGGAGCGCACACAGCCGTCACCGTGCGAAACGAAGA
CGAAGCACGACCGCGCGAAGGGGAACCATATCCGGTCGGACGCAGATAAC
TCCCTCGTTTGTGTGCGCCCCGAGCTGTGCCAAACACACGGAATTTCCTA
CATGATGGGGACCCAACTACAGCTCTACAACTCTTGCATGGAAGATCTCC
AGGCAGCGTTCGAACAGGGCCATGTCGAAGTGGGGTCGATCTCCAAGAAG
TCATTCGAGGACATCATACCCTTCTACGTAGTGGAACAGTCACCTCGCTC
CTGCCTTTGTGTGCATTGTTACAAGGCGAAGCTAGCCACGGTTTCCCTTG
TCAAGATGTGGCCGACGCTCCACCACGGCGAAACAACGGGAGCTGCCTGC
TCGTGCACTTGCGACCTGTGCTCCTCGGCAGGGGGCTGTAAGGAATTCCT
GCCGTATTCCTCGCCCAAGGAGGTCTCCAGCATGGGCAAGTTAAGCGACA
AACTCATGTGCGACAAAATCTTCCTTTACACAGCTACCGGCAACGGAAAG
GCCATCAGTGCACACTCATCGGTTTGCGTATCGGGGAATTGCCCGCGGTG
CAAGGAAAGGCAGGACCGTTTCTTTGGTTGCCCTCGGAATAGAGGGGGTA
TCGACCGGGACTTGGGGCCCGCTTCTACCTCTTCCTCGACCATCCATCCT
GCAGGACGAACGTCGGGTGGGACCGTCGAGTGGAGTATGTTCGACACGGT
AGATGAAGCGGGGCGTGCAGTGGGGCCTAGCCGTAGGAAAGGGGCAAATG
CGGGCGGCGACGGAGAGAGCGACGACGACTCAGGGGGCGCGGGCAGACCA
AGACCGAAGAAGGGGGTTGTTGTCAAGAGAGGCACGGTCGACGAGTTCTT
TGAAGAGGTCCGGGAGATTCAGGGTGTCTACAGAAAGCATCGAAGACAAT
TCCACCACCAGAGAAGTACATTCAACGAGACTCTAGCAACGTTGGAAGAG
GGCCAGGTCGTGTTCGTCGTGGACTTCCAGGAACAGCTACAACTGAGCGA
GCAGGACGAAGTTCAGTCCCAACACTGGCAGCACGAGAGTGTGACCATTT
TCCCCGCCCCTATCTACTTCAAGATGAGAGGGCGAGTTTGGTGCTACTCT
TTCCAGGTCCTCAGCGATGACAGGACCCAAGACAACGTGTGGGTGCAGTA
CGTCATGAATCAGTTGCTAAGTGTCCATGTCCCTGGCCTGTTGCGGAAAG
TCGGGGCCGCCCCGATGACCAAAGCCATAATCTTCACGGACAACTGTGCC
AAGCAGTTCAAGTGTAGATTTCACTTTGGCTGGGTTGCCCAAAGCGGTGT
GATGATTCGCGACTCCGACGGGAATGCCACCGACATGCGTCTTGTTGTTG
AGCACCACTACTTCGGCTCGTGTCATGGGAAGAGCAATTCGGACTCAGAG
GGAGCTATAACGAAGTTGGCAGAGAGAACGAACGTCATGAACGGGTCGTG
GGTCGTCCGAAACCCGGAACATCTTTGCGAGCTGCTGGCGAAGGAATTCT
CCTTCTTGCTGCAGGAGGCTTCTCCAGACGAGGCTGATCGCTTCTACGAA
GACAAGAGCCACAGCCGAGGAGGGCAGCAGCTTCTGGTGACAAAGGTGTG
CGACCATCAACTGCCCCCAACCGGGAAAGATAGACCCATTCCCGATGATA
GGTCGACCTTGGTTGTTCAGATATCGTTGGTCTTTTCATGAATAGCCTGT
AAATACGTTGGAGTCGCAACCTGAGACCGAAACGCCACGACATCTTTCAT
CAACATGCGTCCTGTCTTCTACCCACCCATGGCGAAACTAACCATTTTGA
GCCTCGACCATATCACCTAATGTTTGCTACATGGCCAAACGCTGGTGTCC
TGTTTTCATTGTGATCGTAGGTGGTGGAAGGGGACGACGGTGCTGAGAGC
AGGAAGACGTTCCTCCTCACAAAGAAGAAGAACACGCTTCTTGGAAGAAA
GTACCTCTTCGTTCGACAAGGCGATATTCCCGAGGCCTTCCGCGCCGCGG
CCCGATCTGAGGCCAACGCAATTCCCGTCT
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protein sequence of Ec-00_004690.3

>Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=117bp
MPTSCSRRVQGKKERTPRRRAGRARRVVNRERVERRCKCGRVFATENNGG
HHRLSPCYLGGRQVLPRRNPQREDVQEGQGTTRGGAKEQRFRQNGGQTKT
KIGQPGGPLPVRDGQG*
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mRNA from alignment at chr_00:6439230..6445763-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6534bp|location=Sequence derived from alignment at chr_00:6439230..6445763- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AACTTACCGCGTGGTGGACTATGTTGTCAGTTCGTGACGTCGCCGCCGGC CGGTTGTCGGGCGAACACCGGACACAAGCCACACTTTTTGCGACGCCCTC GCCTGCCAACGTTGGTGCAACGTCCCCGCCGACACCACTGGGTCGCCTAG ACATCAACACCCCACCACAACCCGCCGACCCCCAGCAGGCGGCAAAGAGA AGGTGAGCACAGTAGACAGCAGGGAGGGTTCTCTAACGGCGTTGTTGTTG GTGGTGCACACGCATAAGAACGGACGGGAGAGACGTGCTCCTTCGAGCAC CCGTTGTTCGTAGTTTTGAACTGAATGAATGGTCGCGCCCCAGGCGAGCT TTTTAATCGCAATCAAGCAAGAAAGTAAGCGGAGTACGCCTGTCTGTGTG CCACGTTCGAGCACCGCACGTGGTCTCATACCCAGGATCGGTCATGTCAG TGCGAACGCAAATAAATATGCATGTGCATGAACATGTGCAGACATGGCCA TTGATTCTCGTTGCAAATTTTAAGACCAACCGTCATATTTTCGTGCGTGC TGAACGAAGGTTACGCCAACAATCGATGTGCTGCGTGCAAGCAGTCCCAT TCATAGATGGCCCTAATGCGAAAGGTTGCACAACTCACAGCTACTGATGA TAGTCAATACCAAAGGGGCGTGGTGACTGCGTGCGAAGATACGACGCAGC CGCATCTGGAAGGGCGGTTTTTTAGCAAACGGTCACTTCTTCGTTGGATC AACGGCCAGTTTTTATTCGTGCTTCACGGCCAACTTTCCACGATTGCGTT TGGGAAATATCAACTACTACTCGGCCGTTTACAACACCCAGACGTCTTTG TCTATTGGACCCCGTACTACACACGCAGACTCACACACGGCCGGCCGAGC GTTTTGGTTGAAATTTATTTGGAAAGCAGTCTCTCGCCAGCTGAGAGGAT TGATTTCACTGACGAGACCACGAATGAAAGTTTGCAACGCCAAAGCACTT GTTGTGGTGTCGTAACAATGCACTGCTGCTCAATTACGTGCCAACGGCTA ATTTCCGAAGACCTGGCATGTAATATCATCAGCATGAGGTCGGCTCATTT CCTTCACAGGTAGGGGGACCGACCGAAAAGCCGTCAGGAATGTATGGTAA AGCGTTGTTAAAACTTTTATATGCTGTCATTGCCGGCGGTTTTATCTTGC TTGTTCAATTCTCCCTCATGCTCGCATGAAAATTAAAAGGTATTTTTCAA TTACAAATTATAACGGTTGTTCTGGTGTACACAACAAAAGGTGTACAGTG GGGGTCCCTCTATAGTGCGTGTTATGTAGTGTGGGTGCCCGGATTAGTGC GGGTACAATATTGACTGGCCCAATTGGAATACTTGAAGTAGCTTGGCACC TACCCGCACTATAGAGGGCACCCCATTGCACCCCCTTTTGGGGCAGTATA CCTGTGACCATGGAGAAAGGCATCCGCGTCAGTTGGACCAAAAACGACAT TGGAATGTATTGAGCGGAGACGGGAACGTTTGTTTTGTGTGTGAGAAGAC GACGACAACAACAACAACGGGCACCATCAGTAGTGAAGACGATGGTTTTT ATGTCGTAGAATGCTGTGGGACATGGCATGCTGCTGTAAAATAGCGTACC CACCCGTACATGACCCAAGATGTCACAGCCCTAGGCCGTTCTATAAATTC TCTGAATCTCCATAGCGTTAAAAGCAGCAGTGGCAGTGCTAACAGCAGTA GTCTTGTCGTTGTCTCGTCGAGCACATTGGTCTCTTCGTCGTGCCCAAAA CGAGCTTGTAAAGCCGATTTGGTGGGTGTGAGGTGCCATCTTGTGTAACC CGCGGGGCCCCCAGTGGGAGGACGCCAATCAATGCTGGCGAACATCGGAA CCCGACGTACGCAGTCCGCGAAGGTAGCAACCTCATGTTTATATCTGTTG GGTATCAAACCTGCTGTCATTCATCGTAACCTGGGGGGTAACCGAAAACA TACCAACTTCTGCACCCGTCGCACGACATCGTCGTAAGCCGAAGTCCGCA GTCTACCAAACTTGCGAATGGTGACAGAAATGAATAGTCCGGGAGGTTTG AAGTTGCAAGGGCAATGTATATACATCAGATCAATGGAGTTCGTATCGGG TCCACCCCCCCCTCGAGTTGCTAGGTCTATCAACTCAATGGAATTGGTAT CAGGTCCACCTTCATGGGCGAGTTGCTAGGGCTATCAACTCAATTAAGTT TGTTTCGGGCCCACCCCCCCTCTGGAGTTGCTAGGTCTATCAAGTCAATG GGGTTGGTATCAAGTCCACCTTTATGGGCGAGTTGCCAGGGCTATCAAGC CAATGAAGTTTGTTTCAGGTCCACCCCCCCTTCTCGATAGCAGCTGACCG TTGGACTAAATATATACGCAATCAACGTTGACTGCACGGGAACAAATCCC GACAGGTCACTCTACAAAGCACGATTAGTTATTTTTCCGGCAACGTCTGA CGAGGGGTCACGCCCAGAAGATCCCTGCTCAAATACCAGTGCTCAACCGG GTGGCGATGAGTCGAGAGTAAATATTTTTGTCGATGAAAGATCACCATCG GACTAGACGTTGTACTGCGCATCTAGTCCGAGCTTGTATCCAATACCCCC CCTGAGTTGCTAGGGCGATCAAGCCCCAGTGACGTTTGTATGGGATGTTA ATAATATTAATCCAATGCTGATCCATGTCAAAACAGTTTTCATGTACATA TACTAGCCCCACTCCTGACATATTCGACTTGGTTGTTGGGAGAACCGTCT TCCACACACGCTTCATCGAACTACTCTATCTAATGCATGTTGCAAATAAA TGCGATTTTCGCCTTCATGTTCGTTTTGCCATTCGAACAGGAAGAACACC GAATCCACAAGAAAGTGCCGGTTTGTGAAAGCCATCAAGGAAAACATCGA CTCAAGTGCAAGGAGCCATGCGGATACGTTTGGGATGTCCTTCGAACAAG CACAAAAAGACGCCTACAAGGGCGTCATGACCCACGAGATATGCCGACAA GTTGTTCACGACGAGTGCAAGGCAAAAAAGAACGAACACCACGCCGTCGT GCAGGCCGTGCGCGACGTGTGGTCAATCGTGAGCGGGTCGAGCGTCGTTG CAAGTGCGGGAGGGTATTCGCTACGGAGAACAATGGTGGGCATCATCGGC TCTCCCCGTGTTACCTTGGAGGCCGCCAAGTCCTTCCTAGGAGGAACCCT CAAAGAGAAGACGTACAAGAAGGCCAGGGAACGACGAGAGGAGGCGCTAA AGAACAACGATTTCGGCAAAATGTAAGTCTACTTCAAACATTATCCGGGC ATCCACTTTTTTTGTGATCGTAGGCAAGTTCGTGTATGTTTCCACTATTG AATAATCCCATTCACCATGTGTACATTGGCCACGCAGCTTGCGTCGGTTA ACCGTGATAAACCTTAGATACGCCCTCGTCATTGCTTTTTTAGTTTGTAT TTTTATTTATTGTGGAAGGATGCATAGCCACGGTGGTTTTTCTACGATTA AGGTGCACAGACGAAGTACATAAGCAATGTCCATTCTTTAGAAAAGGGTT GTATTTGGCCTCGCTTTCTCGATACGATTGCTATCTGCTTTTGCCGATGT CGCGCGCAGGGCGGGCAAACGAAAACAAAGATCGGACAACCTGGAGGACC TTTACCCGTTCGCGATGGCCAGGGTTAGGGAAAGCATCGAGGAGCGCACA CAGCCGTCACCGTGCGAAACGAAGACGAAGCACGACCGCGCGAAGGGGAA CCATATCCGGTCGGACGCAGATAACTCCCTCGTTTGTGTGCGCCCCGAGC TGTGCCAAACACACGGAATTTCCTACATGATGGGGACCCAACTACAGCTC TACAACTCTTGCATGGAAGATCTCCAGGCAGCGGTAAGTGCGAAGAAGAG GAAGCTTTTATGCGTTGGTACCAACTACACGATCCGGTATGCCTTGGCAG CAATCAGCGTCAATCTTTCTTACCTTCCACGCTGTTTGCGCTGCTTTTGG GTGGAGCCTACTCCTGAGAACGAGTCTTACTTATCCGTTCATCCGCTGAA GCTATCGTGACCAATGAATAGATACACCATTGTAAATCCTTGCTACATCA AGGGCGTCGTGCTTTGCCAATGTCAATATAGACTATCTCGCCATCTCGAA TGCCAAAGACATTTAACAAGAGGTCCCATCACCCACCCGCGTGTGCCGTA CTTTATGGACAGTTCGAACAGGGCCATGTCGAAGTGGGGTCGATCTCCAA GAAGTCATTCGAGGACATCATACCCTTCTACGTAGTGGAACAGTCACCTC GCTCCTGCCTTTGTGTGCATTGTTACAAGGCGAAGCTAGCCACGGTTTCC CTTGTCAAGATGTGGCCGACGCTCCACCACGGCGAAACAACGGGAGCTGC CTGCTCGTGCACTTGCGACCTGTGCTCCTCGGCAGGGGGCTGTAAGGAAT TCCTGCCGTATTCCTCGCCCAAGGAGGTCTCCAGCATGGGCAAGTTAAGC GACAAACTCATGTGCGACAAAATCTTCCTTTACACAGCTACCGGCAACGG AAAGGCCATCAGTGCACACTCATCGGTTTGCGTATCGGGGAATTGCCCGC GGTGCAAGGAAAGGCAGGACCGTTTCTTTGGTTGCCCTCGGAATAGAGGG GGTATCGACCGGGACTTGGGGCCCGCTTCTACCTCTTCCTCGACCATCCA TCCTGCAGGACGAACGTCGGGTGGGACCGTCGAGTGGAGTATGTTCGACA CGGTAGATGAAGCGGGGCGTGCAGTGGGGCCTAGCCGTAGGAAAGGGGCA AATGCGGGCGGCGACGGAGAGAGCGACGACGACTCAGGGGGCGCGGGCAG ACCAAGACCGAAGAAGGTGAAAACAAGTGTGTCAGCGGCACTATCTTAGG CCAGACATTTGGAATAATACTGTGGCATGAGTTAACCTGGAACGCTGGGC GGCACGACGCACCGATCCGTTAGTCCAGATCGGCCGTTCGTCCCGATCGG GCGTTGCTATAGATCGGCGCTTTGAATCTTTCTACAGATCGGTGCAGAGG CATACACCACGTTCGAGTTGATAGCGTTAGCAAGTACACCAATCGTTGAA TGTGTTGCCAACAAATATTCCCATGCGCTAACGGCCACGCCAATGATATT GTTTTCGGGACTAAGTTTACGCAACGTCAACTCACCAACGCTGTTGATTC TTCATTGTGGCCCGACTCGTACACATTCCGTGTGTGTCTCGTTACCTGTT CCCCCCTATCGAGCAGGGGGTTGTTGTCAAGAGAGGCACGGTCGACGAGT TCTTTGAAGAGGTCCGGGAGATTCAGGGTGTCTACAGAAAGCATCGAAGA CAATTCCACCACCAGAGAAGTACATTCAACGAGACTCTAGCAACGTTGGA AGAGGGCCAGGTCGTGTTCGTCGTGGACTTCCAGGAACAGCTACAACTGA GCGAGCAGGACGAAGTTCAGTCCCAACACTGGCAGCACGAGAGTGTGACC ATTTTCCCCGCCCCTATCTACTTCAAGATGAGAGGGCGAGTTTGGTGCTA CTCTTTCCAGGTCCTCAGCGATGACAGGACCCAAGACAACGTGTGGGTGC AGTACGTCATGAATCAGTTGCTAAGTGTCCATGTCCCTGGCCTGTTGCGG AAAGTCGGGGCCGCCCCGATGACCAAAGCCATAATCTTCACGGACAACTG TGCCAAGCAGTTCAAGTGTAGATTTCACTTTGGCTGGGTTGCCCAAAGCG GTGTGATGATTCGCGACTCCGACGGGAATGCCACCGACATGCGTCTTGTT GTTGAGCACCACTACTTCGGCTCGTGTCATGGGAAGAGCAATTCGGACTC AGAGGGAGCTATAACGAAGTTGGCAGAGAGAACGAACGTCATGAACGGGT CGTGGGTCGTCCGAAACCCGGAACATCTTTGCGAGCTGCTGGCGAAGGAA TTCTCCTTCTTGCTGCAGGAGGCTTCTCCAGACGAGGCTGATCGCTTCTA CGAAGACAAGAGCCACAGCCGAGGAGGGCAGCAGCTTCTGGTGACAAAGG TGTGCGACCATCAACTGCCCCCAACCGGGAAAGATAGACCCATTCCCGAT GATAGGTCGACCTTGGTTGTTCAGATATCGTTGGTCTTTTCATGAATAGC CTGTAAATACGTTGGAGTCGCAACCTGAGACCGAAACGCCACGACATCTT TCATCAACATGCGTCCTGTCTTCTACCCACCCATGGCGAAACTAACCATT TTGAGCCTCGACCATATCACCTAATGTTTGCTACATGGCCAAACGCTGGT GTCCTGTTTTCATTGTGATCGTAGGTGGTGGAAGGGGACGACGGTGCTGA GAGCAGGAAGACGTTCCTCCTCACAAAGAAGAAGAACACGCTTCTTGGAA GAAAGTACCTCTTCGTTCGACAAGGCGATATTCCCGAGGCCTTCCGCGCC GCGGCCCGATCTGAGGCCAACGCAATTCCCGTCT
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Coding sequence (CDS) from alignment at chr_00:6439230..6445763-

>Ec-00_004690.3 ID=Ec-00_004690.3|Name=Ec-00_004690.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=351bp|location=Sequence derived from alignment at chr_00:6439230..6445763- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGACAAGTTGTTCACGACGAGTGCAAGGCAAAAAAGAACGAACACC
ACGCCGTCGTGCAGGCCGTGCGCGACGTGTGGTCAATCGTGAGCGGGTCG
AGCGTCGTTGCAAGTGCGGGAGGGTATTCGCTACGGAGAACAATGGTGGG
CATCATCGGCTCTCCCCGTGTTACCTTGGAGGCCGCCAAGTCCTTCCTAG
GAGGAACCCTCAAAGAGAAGACGTACAAGAAGGCCAGGGAACGACGAGAG
GAGGCGCTAAAGAACAACGATTTCGGCAAAATGGCGGGCAAACGAAAACA
AAGATCGGACAACCTGGAGGACCTTTACCCGTTCGCGATGGCCAGGGTTA
G
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Synonyms
The feature 'Ec-00_004690.3' has the following synonyms
Synonym
Esi0361_0028
Esi_0361_0028