Ec-00_004620.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004620.1
Unique NameEc-00_004620.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length424
Homology
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BLAST of Ec-00_004620.1 vs. uniprot
Match: D8LLH4_ECTSI (Protein ARV n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH4_ECTSI)

HSP 1 Score: 539 bits (1388), Expect = 6.420e-184
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 1 
Query:   64 MAVGSSAETMSMKGSASLAEQXXXXXXXXXXXARPFVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEHACFAAGAVLFATSRVRAAAXXXXXXXXXXXXQTGRRSTRSTGTINGGRQEEDWDEYGXXXXXXXXXXXXXEWRSSGDVGGTXXXXXXXXXXXXXXXXXXXXXXXXXXYESSSSYSLPPPRPDSSSTIPSXXXXXXXXXXXPLCXXXXXXXXXXXRAAKMYMAVVYPLFFRLLAAFVMIWDRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLASKMAARAVLCLWFGSDPRTLRML 1332
            MAVGSSAETMSMKGSASLAEQXXXXXXXXXXXARPFVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEHACFAAGAVLFATSRVRAAAXXXXXXXXXXXXQTGRRSTRSTGTINGGRQEEDWDEYGXXXXXXXXXXXXXEWRSSGDVGGTXXXXXXXXXXXXXXXXXXXXXXXXXXYESSSSYSLPPPRPDSSSTIPSXXXXXXXXXXXPLCXXXXXXXXXXXRAAKMYMAVVYPLFFRLLAAFVMIWDRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLASKMAARAVLCLWFGSDPRTLRML
Sbjct:    1 MAVGSSAETMSMKGSASLAEQXXXXXXXXXXXARPFVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEHACFAAGAVLFATSRVRAAAXXXXXXXXXXXXQTGRRSTRSTGTINGGRQEEDWDEYGXXXXXXXXXXXXXEWRSSGDVGGTXXXXXXXXXXXXXXXXXXXXXXXXXXYESSSSYSLPPPRPDSSSTIPSXXXXXXXXXXXPLCXXXXXXXXXXXRAAKMYMAVVYPLFFRLLAAFVMIWDRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLASKMAARAVLCLWFGSDPRTLRML 423
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BLAST of Ec-00_004620.1 vs. uniprot
Match: A0A7S1CNP5_9STRA (Protein ARV (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNP5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.910e-23
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  172 VCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALD 429
            +CV CGR ++ +FREY+KGNIRL RC +C++VADKYIE+E VLIAID+ LHR+  YRHLLFN   +  H     +  + + +  LD
Sbjct:   16 ICVVCGRSLSHVFREYSKGNIRLSRCDHCKNVADKYIEYELVLIAIDMVLHRISVYRHLLFNRLEYQEHGVPRPIVMIAIAILCLD 101
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BLAST of Ec-00_004620.1 vs. uniprot
Match: A0A836DLE2_9ROSI (Protein ARV n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836DLE2_9ROSI)

HSP 1 Score: 101 bits (251), Expect = 1.140e-20
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:  175 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAH 435
            CVECG P+  LF +Y+ GNIRL RC  C++VAD+YIE EF++I+IDL LH+ +AYRHLLFN+    T +F G LW+       LDA+
Sbjct:   16 CVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIISIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAY 102
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BLAST of Ec-00_004620.1 vs. uniprot
Match: A0A2P2MPP1_RHIMU (Protein ARV n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MPP1_RHIMU)

HSP 1 Score: 99.0 bits (245), Expect = 1.550e-20
Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:  175 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAH 435
            CV+CG  +  LF +Y+ GNIRL +C  C++VAD+YIE EF++I IDL LH+ QAYRHLL+N+    T +F+G LW+  +G   LDA+
Sbjct:    6 CVKCGFRIKTLFVQYSPGNIRLMKCENCKAVADEYIECEFMIILIDLILHKPQAYRHLLYNVLFQETVNFQGLLWKSTIGFLVLDAY 92
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BLAST of Ec-00_004620.1 vs. uniprot
Match: A0A3N7FYG6_POPTR (Protein ARV n=7 Tax=Populus TaxID=3689 RepID=A0A3N7FYG6_POPTR)

HSP 1 Score: 100 bits (249), Expect = 1.560e-20
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  175 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAH 435
            CVECG P+  LF +Y+ GNIRL RC  C++VAD+YIE EF++I IDL LH+ +AYRHLLFN+    T +F G LW+       LDA+
Sbjct:    5 CVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAY 91
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BLAST of Ec-00_004620.1 vs. uniprot
Match: A0A3N7G147_POPTR (Protein ARV n=9 Tax=Populus TaxID=3689 RepID=A0A3N7G147_POPTR)

HSP 1 Score: 100 bits (249), Expect = 3.530e-20
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  175 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAH 435
            CVECG P+  LF +Y+ GNIRL RC  C++VAD+YIE EF++I IDL LH+ +AYRHLLFN+    T +F G LW+       LDA+
Sbjct:    5 CVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAY 91
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BLAST of Ec-00_004620.1 vs. uniprot
Match: W7TPQ8_9STRA (Protein ARV n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPQ8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.740e-20
Identity = 44/92 (47.83%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:  172 VCVECGRPVAL-LFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRH 444
            +C+ECG+PV   L+REY+K NIRL RC +C +VAD+ IE+E VL+ +DLALHR+ A+RH+LFN +P +   F  +LW++ + +  +D H+++
Sbjct:   45 LCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKY 135
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BLAST of Ec-00_004620.1 vs. uniprot
Match: A0A2I1G244_9GLOM (Protein ARV n=12 Tax=Glomeraceae TaxID=36751 RepID=A0A2I1G244_9GLOM)

HSP 1 Score: 97.4 bits (241), Expect = 1.920e-19
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:  175 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLR 441
            CVECG PV  L+ EY+KGNIRL  C  C+  ADKY+E +FV+I ID+ LH+ Q YRHLLFN   +  H     +++LG+ +   D +++
Sbjct:    4 CVECGAPVTNLYTEYSKGNIRLTPCEKCKKFADKYVEHDFVIIFIDMLLHKPQVYRHLLFNRLEYRDHGIDPNVFKLGILLILFDVYIK 92
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BLAST of Ec-00_004620.1 vs. uniprot
Match: A0A1Y2GYY3_9FUNG (Protein ARV n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GYY3_9FUNG)

HSP 1 Score: 98.6 bits (244), Expect = 2.030e-19
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:  172 VCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEA 465
            +CVECG  V+ L+ EY+KGNIRL  C +C+ +ADKY+E +FV+I +D+ LH+   YRHLLFN  P+        +++LGV +   D +++   L  EA
Sbjct:    3 ICVECGAAVSSLYTEYSKGNIRLTYCEHCKKLADKYVEHDFVIIFVDMVLHKKPVYRHLLFNRLPYRDLGIDPNVFKLGVLLILFDVYIKWFRLEQEA 100
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BLAST of Ec-00_004620.1 vs. uniprot
Match: UPI0012461EB1 (protein ARV 2 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI0012461EB1)

HSP 1 Score: 96.7 bits (239), Expect = 1.060e-18
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:  175 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLR 441
            CVECG  +  LF +Y+ GNIRL +C  C++VAD+YIE  F+++ IDL LH+ +AYRHLLFN+       F G LW+  VG   LDA+ R
Sbjct:    8 CVECGFRIKTLFVQYSPGNIRLMKCENCKAVADEYIECNFLILLIDLILHKPKAYRHLLFNVLKQGAPHFEGLLWKSTVGYLLLDAYRR 96
The following BLAST results are available for this feature:
BLAST of Ec-00_004620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLH4_ECTSI6.420e-184100.00Protein ARV n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A7S1CNP5_9STRA5.910e-2352.33Protein ARV (Fragment) n=1 Tax=Bicosoecida sp. CB-... [more]
A0A836DLE2_9ROSI1.140e-2054.02Protein ARV n=1 Tax=Salix suchowensis TaxID=127890... [more]
A0A2P2MPP1_RHIMU1.550e-2051.72Protein ARV n=1 Tax=Rhizophora mucronata TaxID=611... [more]
A0A3N7FYG6_POPTR1.560e-2054.02Protein ARV n=7 Tax=Populus TaxID=3689 RepID=A0A3N... [more]
A0A3N7G147_POPTR3.530e-2054.02Protein ARV n=9 Tax=Populus TaxID=3689 RepID=A0A3N... [more]
W7TPQ8_9STRA4.740e-2047.83Protein ARV n=1 Tax=Nannochloropsis gaditana TaxID... [more]
A0A2I1G244_9GLOM1.920e-1947.19Protein ARV n=12 Tax=Glomeraceae TaxID=36751 RepID... [more]
A0A1Y2GYY3_9FUNG2.030e-1943.88Protein ARV n=1 Tax=Lobosporangium transversale Ta... [more]
UPI0012461EB11.060e-1850.56protein ARV 2 n=1 Tax=Quercus lobata TaxID=97700 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6387553..6392113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score544.7
Seed ortholog evalue3.9e-152
Seed eggNOG ortholog2880.D8LLH4
Length2188
KEGG koko:K21848
KEGG TC9.A.19.1
Hectar predicted targeting categoryother localisation
Gene idEc-00_004620.1
EggNOG free text desc.regulation of plasma membrane sterol distribution
EggNOG OGsCOG5254@1,KOG3134@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004620Ec-00_004620Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6387553..6392113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004620.1Ec-00_004620.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6387617..6391261 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004620.1.1Ec-00_004620.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6387553..6387802 +
Ec-00_004620.1.2Ec-00_004620.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6389101..6389238 +
Ec-00_004620.1.3Ec-00_004620.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6389796..6390530 +
Ec-00_004620.1.4Ec-00_004620.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6391049..6392113 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0046205UTR:Ec-00_004620.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 6387553..6387616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004620.1CDS:Ec-00_004620.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6387617..6387802 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0046203UTR:Ec-00_004620.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 6391262..6392113 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004620.1 ID=Ec-00_004620.1|Name=Ec-00_004620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=424bp
MAVGSSAETMSMKGSASLAEQQQEVVAAAAAAARPFVCVECGRPVALLFR
EYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMR
PFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAAAAAAQESAGSVVVAG
DGGGDPFWEAGGLLLAAVVEHACFAAGAVLFATSRVRAAAAKAAKARRNR
NRQTGRRSTRSTGTINGGRQEEDWDEYGGGGRSAADRRDDDEWRSSGDVG
GTGGLGEGQQQRRQGRAGEEDGEDGDDGYESSSSYSLPPPRPDSSSTIPS
TAPSSATVAASPLCVGGGGGGGGSSRAAKMYMAVVYPLFFRLLAAFVMIW
DRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLA
SKMAARAVLCLWFGSDPRTLRML*
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spliced messenger RNA

>Ec-00_004620.1 ID=Ec-00_004620.1|Name=Ec-00_004620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2188bp|location=Sequence derived from alignment at chr_00:6387553..6392113+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCAGCGGTACACGCACAGCGGGAGCACTACTGCTGTGTATGGTGAAGTGC
AGTAGTCTGTCAACATGGCGGTTGGAAGCTCTGCTGAGACTATGTCTATG
AAGGGGAGTGCGAGCTTGGCTGAGCAGCAGCAGGAGGTGGTGGCGGCGGC
AGCGGCAGCCGCCCGACCCTTCGTGTGTGTAGAGTGCGGTAGACCCGTCG
CACTTCTGTTTCGAGAGTACAACAAGGGCAACATCCGACTGGGACGATGT
AGCTACTGCCGGTCCGTGGCGGACAAGTACATCGAGTGGGAGTTCGTCTT
GATCGCGATTGACCTGGCCTTACATCGGGTCCAGGCCTACCGGCACCTAC
TCTTCAACATGAGGCCATTCAGTACACACAGTTTTCGGGGGCGGTTGTGG
CAGCTGGGGGTAGGCATGGCAGCCCTCGACGCCCACCTCCGACACACGGC
ACTGTCCAGCGAGGCGGCGGCGGCGGCCGCTCAGGAGTCTGCGGGGAGCG
TTGTTGTGGCCGGCGACGGGGGCGGGGACCCTTTCTGGGAAGCGGGCGGG
CTGCTCCTCGCCGCGGTGGTCGAGCACGCGTGTTTCGCGGCTGGGGCGGT
GCTTTTCGCGACGAGCAGGGTGCGCGCGGCGGCGGCAAAGGCGGCAAAGG
CGCGGCGAAACCGAAATCGACAAACCGGCCGGCGAAGCACACGGAGCACT
GGTACGATAAACGGCGGTCGGCAGGAGGAGGACTGGGATGAGTATGGAGG
CGGCGGCCGTAGCGCCGCCGATAGAAGGGACGACGACGAGTGGAGAAGTA
GTGGTGATGTGGGGGGCACCGGTGGGCTGGGGGAGGGACAACAACAAAGA
CGACAGGGCAGGGCCGGGGAGGAAGACGGAGAAGACGGAGATGACGGTTA
CGAGTCTTCCTCGTCCTATTCGCTGCCCCCGCCACGACCGGATTCTTCCA
GCACCATTCCATCGACCGCACCGTCTTCTGCGACAGTGGCGGCATCGCCT
CTGTGTGTTGGTGGCGGCGGCGGCGGCGGTGGTTCTTCCCGTGCAGCCAA
GATGTACATGGCCGTGGTGTACCCCCTGTTTTTCAGACTCCTCGCAGCGT
TCGTCATGATCTGGGATCGACAGGTGGCGATCCTGAACACCATCGAGTTG
CTAGTGGCCACCATGCAGTTCGTCGCCCTGTCCGCCGTCGTCGGGGGGCC
CGCAGCGGTGAGCGGAATGGGGGAGGGGGGCGTCGCCGCCATGTCTGTCT
TGGCCGGTCTGGCTTCCAAGATGGCGGCAAGAGCAGTCCTGTGCCTTTGG
TTCGGCAGCGACCCCAGGACCCTCCGGATGCTGTGACTCGAGGGGCGCCA
TTCCGGGGCTAACGGGAAGGAAAACGCCGCACGGCAGTCGAACTATTACG
ACTATTTAGGCCTAAACACCGGAGGTGCGGAGAGCACATCAGACATCGTG
CCCTTAAGGTTTACGCCAGGAACGCCTCTGTTTTGTGAATCCTCCTTGGC
AAGGAATGCAGGGCTTCATGCGTGCCTCGAGCCTGCGTGCTGTTGGCCGC
GTTTCAGTGGTGTGGGCCTGTACATAATAGCATAATATCAATCTCGAGGG
ACAACCGTCCGTTCTCGAGAGCGGCAGCCGCTGTCTCTCGATGTGATCTG
AGATCTCTGCCGTCGACCTTACGCTACGATTATGCAACCTGTAGGCTGGC
TGCGGGGGGCTTTCCGTCAAGCAGCTAGTTGCAGCTCATCAACGCAGATG
AACGCCGGGAAATCATCCATCCTCTGCTTCTTTGGTTTCGACGTTGCGAA
ACAGGCGTCAGAAACCAACCCCAAAATGATCTTTCGAAAGCAAAACTTCG
TAGCCGACTCCGAAGTTTGCGCGAAGAACAAAATCAGATGCGAAGAGGCT
CGAATGGCAAAGACAAGGTTGCAGTCTGCTTGAAACTGCGACTCGGTTTG
TCTCAGGAGCTGCTGCTCTCGGCTATCACCTCTAAAATAACAGCAGTGCG
TGCGCCAACGAGACAGATCACGCCGGGTGGTACGAGTCTCTCGAACTTTT
TACTTATTTATGCATACGACCCGGGGGTTTCCTTCTAGCAGGGCACCTAT
TAATAGCCGTTCTACATGGAAGGGCCAAAAAACGGTGGCGGTTTGTCTAA
TGCCAGCCAATCACACCTGCTCACGTCTGGAACCCCCC
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protein sequence of Ec-00_004620.1

>Ec-00_004620.1 ID=Ec-00_004620.1|Name=Ec-00_004620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=424bp
MAVGSSAETMSMKGSASLAEQQQEVVAAAAAAARPFVCVECGRPVALLFR
EYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMR
PFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAAAAAAQESAGSVVVAG
DGGGDPFWEAGGLLLAAVVEHACFAAGAVLFATSRVRAAAAKAAKARRNR
NRQTGRRSTRSTGTINGGRQEEDWDEYGGGGRSAADRRDDDEWRSSGDVG
GTGGLGEGQQQRRQGRAGEEDGEDGDDGYESSSSYSLPPPRPDSSSTIPS
TAPSSATVAASPLCVGGGGGGGGSSRAAKMYMAVVYPLFFRLLAAFVMIW
DRQVAILNTIELLVATMQFVALSAVVGGPAAVSGMGEGGVAAMSVLAGLA
SKMAARAVLCLWFGSDPRTLRML*
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mRNA from alignment at chr_00:6387553..6392113+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004620.1 ID=Ec-00_004620.1|Name=Ec-00_004620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4561bp|location=Sequence derived from alignment at chr_00:6387553..6392113+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCAGCGGTACACGCACAGCGGGAGCACTACTGCTGTGTATGGTGAAGTGC
AGTAGTCTGTCAACATGGCGGTTGGAAGCTCTGCTGAGACTATGTCTATG
AAGGGGAGTGCGAGCTTGGCTGAGCAGCAGCAGGAGGTGGTGGCGGCGGC
AGCGGCAGCCGCCCGACCCTTCGTGTGTGTAGAGTGCGGTAGACCCGTCG
CACTTCTGTTTCGAGAGTACAACAAGGGCAACATCCGACTGGGACGATGT
GTGAGTCTCTACGATAGCTTGATGATTGAGTTGCCAGTGCTGCGACCAAG
GAACATGGGCACACAAGAGCAAACAGCAACGGGAGAGACCAAGTCGGTTG
GGCCGCATGCGGCGCAATAAGCTCTCTCGTCTCTCGTATTTCTGTGTGTG
TTTTTATTATTCCTTAATACTGCGTCGTGTACATTCGTGTCGAATGGGTA
GTCTTTCTGTGCGTGTATTTATTTTTCCTTCATTCGTGTACAATACAGCA
GTAGCTCTGCTAGCTCCTCACGTGCTTGTTCTTTCCATTTTATCTTGTAC
TTGAAGTAGCTTTGTACTTTACCGCTAGCGCACACACGGTGCGCATTCGC
TACGGCAGCTGTCTGTCGGCGCTGCGGTTGCGATGATTGCATCGGGCACT
TCCTATACCACAGCAGTTTACCGTGTTCTCCGCTGTGCAATCTCATGAGA
GCCGACGGCGGTTCGATGCAGGCAATAAAAAACTTAACAATCCAAGCACC
AACATCGAACTTTGAAGCCCTCAAGTACCAACATGGACCGACGAGCGAGC
AATCACTCGGCACGCAGCAGCTAAAATGGATATGCATGTACACAGCAGCA
GCAGACAGGCAGACAGGGAATATGCAGAAGGCCGGAGCTTTTCGCTTCTC
GTTTGATGACTCCAGACGGTCCGTTGAACCCGGTGCCCAAAGACGAGATA
CCACTACGCTCTAGGTGTGTTGTGCGAGGAGCGCAGAACGCAGAGTTAAC
GTCATCTCCACTATGATTTCATCGCTACTTTCCGGGGGCATCCACGGATA
GAGAGATGACTCGGTTTGTTTAGGGAAGAACAAGAAGGAGAACACACACA
CCAACACCCTCTTGTTCGTCGACAACAGCAGCAACCCGGAATGAGCCAGC
GATCAGTACATGCTACAGTAGTTTGAACATTGCACATATTGTTTGCTCAG
GCTTTCCCAAACAACGTCGCCTGGAAGGTGCCTGGCCTTTGTCATGTCGC
AAGATCAAGCGCCCTCGCCAACCGATGAGTTTCCCCGCTCGATGCGTATG
ACACCTGTGTTACTCGACATATCTCGTTTCAAATCGCCAATGAATACTTG
CACGAAGAGAGGTGAGAAAATACCTACGCCCGCTGGTTGCTTCGTGGGAC
CAACTACATAGCTTCCGTCGCAAGCGCACGCATGATCGTGTGGTTTCACC
ATCTCGCATGCGTGATCGCATGATGCCGCGGCTTGCTTGATGCTTGCTCT
ATTCTTCGTTTTTTGCTCTCCGCACACTCTATCGCTTGCTCCTTGCAGAG
CTACTGCCGGTCCGTGGCGGACAAGTACATCGAGTGGGAGTTCGTCTTGA
TCGCGATTGACCTGGCCTTACATCGGGTCCAGGCCTACCGGCACCTACTC
TTCAACATGAGGCCATTCAGTACACACAGTTTTCGGGTGCGTGCGGCCAG
ACAAACTACCCCAATGTAGCCCGTTCCTAGAACCCCTCTCCGTTGTTTTT
TTCTAGCCAGACCCACGGGCATTCGCTTCTACAAAACAACAGCTCAGCTT
GTTATATCAGGACGTGCCCTCACTCTTGTTTCGTGCGTTGTAGTAGTCCA
CATGGTGCTTGTTTTTCCCTTCCCGTGCTTGAAGTGTGAGCGGCTTCGTC
TCGTTTCCAACGGGGAGTGTATCGACGCTCTCCAAGGCGTGCGAGACACG
TCAGGTATTGAACCAGTAGCAAAACCCGAACCATGACAGCGCGTCCACAC
ATAACTGTACGATAGGAACACCGGCTCTTTCGCCCACAGCGAGTTATGTT
TAGACGGAATCCGCCCCCCTTGATCAAAAGACGCTCGTGCGCTTGTACCT
CGTGCACACGGTCTGTGCCGTGTGAACGCGTGCACCACTTGTTCGTTGCC
AGCCAGCGTCCACATCGGAACCAGCCAACACACACCAAATCTTCCAACCG
CGCGGAAACAAACACACGCACGCACACACACATACACACACAGGGGCGGT
TGTGGCAGCTGGGGGTAGGCATGGCAGCCCTCGACGCCCACCTCCGACAC
ACGGCACTGTCCAGCGAGGCGGCGGCGGCGGCCGCTCAGGAGTCTGCGGG
GAGCGTTGTTGTGGCCGGCGACGGGGGCGGGGACCCTTTCTGGGAAGCGG
GCGGGCTGCTCCTCGCCGCGGTGGTCGAGCACGCGTGTTTCGCGGCTGGG
GCGGTGCTTTTCGCGACGAGCAGGGTGCGCGCGGCGGCGGCAAAGGCGGC
AAAGGCGCGGCGAAACCGAAATCGACAAACCGGCCGGCGAAGCACACGGA
GCACTGGTACGATAAACGGCGGTCGGCAGGAGGAGGACTGGGATGAGTAT
GGAGGCGGCGGCCGTAGCGCCGCCGATAGAAGGGACGACGACGAGTGGAG
AAGTAGTGGTGATGTGGGGGGCACCGGTGGGCTGGGGGAGGGACAACAAC
AAAGACGACAGGGCAGGGCCGGGGAGGAAGACGGAGAAGACGGAGATGAC
GGTTACGAGTCTTCCTCGTCCTATTCGCTGCCCCCGCCACGACCGGATTC
TTCCAGCACCATTCCATCGACCGCACCGTCTTCTGCGACAGTGGCGGCAT
CGCCTCTGTGTGTTGGTGGCGGCGGCGGCGGCGGTGGTTCTTCCCGTGCA
GCCAAGATGTACATGGCCGTGGTGTACCCCCTGTTTTTCAGACTCCTCGC
AGCGTTCGTCATGATCTGGGATCGACAGGTTTGGTTTGCCACGTCTTTTG
AGATGACTGACGCATCCTCATCATCTTGTCCCTACCTCCGGTCATATTTG
TCCCGAAAAACTGCAAGAATAATTTTTTTCAGAGCTACATGCAATTCGTG
CTACTTAAAACTGCCTGTAGCTCCTCAACCTATGAGATTGCAATTATGTT
GGCTACCGTCAACTTCCGTTGCTCCGTAGGAAAGTTAAAGTTCCTGCTCC
TGACTCTACAGGACCCGAACTGCCCGGGTCAAAGACACTTGACCAATCCC
CTCAGCGCGCAGAGGGAGCGGAGGACTCCAGAATATTCGTCGTTGGTTTC
TATTGACTTTTGGACCCCTCGGGGCCAGTTTATTTGAGTGTACCTTTTTA
GGGTAAGTTAGCCTGTGACCACGGGAATGCGACTCCGTCAGGTGTTGGAT
CAGTACGGAAACACGAAGGTAGTGGGTAGAGAGAGATCGGAACGGTTTTT
AATGTGAAGACAACAACAACAACAATCCCCTTATCCCGCGGTTCAGGTGG
CGATCCTGAACACCATCGAGTTGCTAGTGGCCACCATGCAGTTCGTCGCC
CTGTCCGCCGTCGTCGGGGGGCCCGCAGCGGTGAGCGGAATGGGGGAGGG
GGGCGTCGCCGCCATGTCTGTCTTGGCCGGTCTGGCTTCCAAGATGGCGG
CAAGAGCAGTCCTGTGCCTTTGGTTCGGCAGCGACCCCAGGACCCTCCGG
ATGCTGTGACTCGAGGGGCGCCATTCCGGGGCTAACGGGAAGGAAAACGC
CGCACGGCAGTCGAACTATTACGACTATTTAGGCCTAAACACCGGAGGTG
CGGAGAGCACATCAGACATCGTGCCCTTAAGGTTTACGCCAGGAACGCCT
CTGTTTTGTGAATCCTCCTTGGCAAGGAATGCAGGGCTTCATGCGTGCCT
CGAGCCTGCGTGCTGTTGGCCGCGTTTCAGTGGTGTGGGCCTGTACATAA
TAGCATAATATCAATCTCGAGGGACAACCGTCCGTTCTCGAGAGCGGCAG
CCGCTGTCTCTCGATGTGATCTGAGATCTCTGCCGTCGACCTTACGCTAC
GATTATGCAACCTGTAGGCTGGCTGCGGGGGGCTTTCCGTCAAGCAGCTA
GTTGCAGCTCATCAACGCAGATGAACGCCGGGAAATCATCCATCCTCTGC
TTCTTTGGTTTCGACGTTGCGAAACAGGCGTCAGAAACCAACCCCAAAAT
GATCTTTCGAAAGCAAAACTTCGTAGCCGACTCCGAAGTTTGCGCGAAGA
ACAAAATCAGATGCGAAGAGGCTCGAATGGCAAAGACAAGGTTGCAGTCT
GCTTGAAACTGCGACTCGGTTTGTCTCAGGAGCTGCTGCTCTCGGCTATC
ACCTCTAAAATAACAGCAGTGCGTGCGCCAACGAGACAGATCACGCCGGG
TGGTACGAGTCTCTCGAACTTTTTACTTATTTATGCATACGACCCGGGGG
TTTCCTTCTAGCAGGGCACCTATTAATAGCCGTTCTACATGGAAGGGCCA
AAAAACGGTGGCGGTTTGTCTAATGCCAGCCAATCACACCTGCTCACGTC
TGGAACCCCCC
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Coding sequence (CDS) from alignment at chr_00:6387553..6392113+

>Ec-00_004620.1 ID=Ec-00_004620.1|Name=Ec-00_004620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1272bp|location=Sequence derived from alignment at chr_00:6387553..6392113+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGTTGGAAGCTCTGCTGAGACTATGTCTATGAAGGGGAGTGCGAG
CTTGGCTGAGCAGCAGCAGGAGGTGGTGGCGGCGGCAGCGGCAGCCGCCC
GACCCTTCGTGTGTGTAGAGTGCGGTAGACCCGTCGCACTTCTGTTTCGA
GAGTACAACAAGGGCAACATCCGACTGGGACGATGTAGCTACTGCCGGTC
CGTGGCGGACAAGTACATCGAGTGGGAGTTCGTCTTGATCGCGATTGACC
TGGCCTTACATCGGGTCCAGGCCTACCGGCACCTACTCTTCAACATGAGG
CCATTCAGTACACACAGTTTTCGGGGGCGGTTGTGGCAGCTGGGGGTAGG
CATGGCAGCCCTCGACGCCCACCTCCGACACACGGCACTGTCCAGCGAGG
CGGCGGCGGCGGCCGCTCAGGAGTCTGCGGGGAGCGTTGTTGTGGCCGGC
GACGGGGGCGGGGACCCTTTCTGGGAAGCGGGCGGGCTGCTCCTCGCCGC
GGTGGTCGAGCACGCGTGTTTCGCGGCTGGGGCGGTGCTTTTCGCGACGA
GCAGGGTGCGCGCGGCGGCGGCAAAGGCGGCAAAGGCGCGGCGAAACCGA
AATCGACAAACCGGCCGGCGAAGCACACGGAGCACTGGTACGATAAACGG
CGGTCGGCAGGAGGAGGACTGGGATGAGTATGGAGGCGGCGGCCGTAGCG
CCGCCGATAGAAGGGACGACGACGAGTGGAGAAGTAGTGGTGATGTGGGG
GGCACCGGTGGGCTGGGGGAGGGACAACAACAAAGACGACAGGGCAGGGC
CGGGGAGGAAGACGGAGAAGACGGAGATGACGGTTACGAGTCTTCCTCGT
CCTATTCGCTGCCCCCGCCACGACCGGATTCTTCCAGCACCATTCCATCG
ACCGCACCGTCTTCTGCGACAGTGGCGGCATCGCCTCTGTGTGTTGGTGG
CGGCGGCGGCGGCGGTGGTTCTTCCCGTGCAGCCAAGATGTACATGGCCG
TGGTGTACCCCCTGTTTTTCAGACTCCTCGCAGCGTTCGTCATGATCTGG
GATCGACAGGTGGCGATCCTGAACACCATCGAGTTGCTAGTGGCCACCAT
GCAGTTCGTCGCCCTGTCCGCCGTCGTCGGGGGGCCCGCAGCGGTGAGCG
GAATGGGGGAGGGGGGCGTCGCCGCCATGTCTGTCTTGGCCGGTCTGGCT
TCCAAGATGGCGGCAAGAGCAGTCCTGTGCCTTTGGTTCGGCAGCGACCC
CAGGACCCTCCGGATGCTGTGA
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Synonyms
The feature 'Ec-00_004620.1' has the following synonyms
Synonym
Esi0361_0019
Esi_0361_0019