Ec-00_004600.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_004600.1
Unique Name	Ec-00_004600.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	144

Homology

The following BLAST results are available for this feature:

BLAST of Ec-00_004600.1 vs. uniprot

BLAST of Ec-00_004600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:6371873..6376100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	1116
Hectar predicted targeting category	other localisation
Gene id	Ec-00_004600.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_004600	Ec-00_004600	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 6371873..6376100 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004600.1	Ec-00_004600.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 6371921..6375464 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004600.1.1	Ec-00_004600.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6371873..6371955 +
Ec-00_004600.1.2	Ec-00_004600.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6373717..6373868 +
Ec-00_004600.1.3	Ec-00_004600.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6375220..6376100 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004600	5UTR:Ec-00_004600.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 6371873..6371920 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004600.1	CDS:Ec-00_004600.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 6371921..6371955 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004600	3UTR:Ec-00_004600.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 6375465..6376100 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:6371873..6376100+
coding sequence from alignment at chr_00:6371873..6376100+

mRNA sequence

>Ec-00_004600.1 ID=Ec-00_004600.1|Name=Ec-00_004600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=144bp
MEELVAGMVRARSARNQLRERGKTKSGSQSSVSTVASTTKSTKAKGAKEE
RGGKKGRSERSSAREGNPTRGTSPRPSAPRQARASQRLSSGTAVSGGGAG
TASGGGAGASAAGAAAVGVDTARESVSRRASAGSSVRLSSRKR*

spliced messenger RNA

>Ec-00_004600.1 ID=Ec-00_004600.1|Name=Ec-00_004600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1116bp|location=Sequence derived from alignment at chr_00:6371873..6376100+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGGGCAGAGGGCGGCGGGGGCGGGGGAACCGCAGATCTCGGCGCGAACAT
GGAGGAGCTGGTTGCGGGCATGGTCCGGGCGAGGAGCGCCAGGAATCAGC
TCCGCGAGAGGGGGAAGACGAAATCCGGCTCCCAGTCATCAGTGTCTACG
GTGGCGTCTACGACAAAGAGTACCAAGGCCAAGGGTGCCAAGGAGGAACG
GGGGGGCAAGAAAGGAAGATCGGAACGGAGCTCGGCCCGTGAAGGTAACC
CCACACGCGGAACCTCCCCGCGCCCTAGCGCGCCGCGCCAGGCGAGGGCT
TCGCAGCGGCTCTCGAGCGGGACGGCGGTGTCTGGCGGGGGAGCGGGCAC
CGCTAGCGGCGGTGGGGCGGGGGCATCGGCGGCGGGGGCGGCTGCTGTGG
GGGTCGACACGGCTCGTGAGTCTGTGTCCCGGCGTGCCAGTGCCGGGAGT
TCCGTTCGGCTCTCCTCGCGCAAGCGTTAAGGGGGCTGGGGTCGGGACAC
ACGGCTGCGATTGAAGGCGGGGGGGGGGGGGATCCTGGACCCAAGAGTTT
CTGGACAATGGTCCCCCGGTGGAAGTCGAGAGTGTTTCATCAGGCCAGAC
TGAAGGAACGGAGAGCTTCGCTTTTTTTCGATGCAACGGGGGGTCCCGAC
GCCTCTGCAATAGAACGAATCCTCGACTGCGGGTTGCGCGATGGCAAGGA
GGGGGTGAGGTTGTAACTGTTTCCTACTATGAGAGAATGCCGATTTAGTT
TTTGGTTCCTTCCCAAGTTCCGTTTGTATGTAGTTTGGGATGTTTTTGGT
TTTGGTTTTGGGGAGAGCGCTCGTCCAATAAGCGGGTCGGAAAGAAGTTT
CTTCTTTTTTTTTTTTCTGACACTTGCCCCGACTCCCAACGTTGTCACGT
GACCCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNN

protein sequence of Ec-00_004600.1

>Ec-00_004600.1 ID=Ec-00_004600.1|Name=Ec-00_004600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=144bp
MEELVAGMVRARSARNQLRERGKTKSGSQSSVSTVASTTKSTKAKGAKEE
RGGKKGRSERSSAREGNPTRGTSPRPSAPRQARASQRLSSGTAVSGGGAG
TASGGGAGASAAGAAAVGVDTARESVSRRASAGSSVRLSSRKR*

mRNA from alignment at chr_00:6371873..6376100+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_004600.1 ID=Ec-00_004600.1|Name=Ec-00_004600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4228bp|location=Sequence derived from alignment at chr_00:6371873..6376100+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGGGCAGAGGGCGGCGGGGGCGGGGGAACCGCAGATCTCGGCGCGAACAT
GGAGGAGCTGGTTGCGGGCATGGTCCGGGCGAGGTGAGGGGTCGGTGGCT
TTCTGATAGATCAGGTGGAAGAGAAGTACACCGGCTTTGTTTTTGTGCGT
TTGCCGCTGTGTACCCCGTCAACCGCCACGTGTCGACCGCTCGCTGTCTT
TTGTTAGCACGGCGCTGGCGTTGTGCGCCCGTCTCGATTTGACTACAGCT
GAAAGACAGTTTTTTCTTCACTAACAGCAGTGTCCTTAAAGGCAGGGGAG
GGTATCCGTACCTGTGTATAGAGGTAGGGAACATTAGCTCAAGCTCAAGC
GCGGCCCTCAGGCCTCACAGCGACGCCTGAGAGCGAAACGACGAGATTAG
GCCTACTCTCAAGCCGACACGATAGCGTGACATCGCGGCTCGCGCCGTAG
AGGGCGCCGCCCGGCCTCCCTCTCCGCGGAGCCCACGTGACGCCCTCTCT
CAGTGAGACGCGCCGCTAAGGGCGCCGGGTGCCGAGCACCGGACGAGCTG
CCGGCGCCGGCGGAACCGCTCCAAGCCACGTGTTAGCACCTGCATTGGCA
CCTCGGACCTCTTCAAGCGAGGCTGTCAGTAAGCGCTGCTGTGAGGCTGT
GATTGGGCGGAACGTTCTATCGGTGTATTTTCGGGAATTTATCGCAGAAC
TCGGAAAGTCGGAACAATGTCTATAATAGCATAACAAGCAAACACGCATG
TCTACCTCTTGGGTACTTATTACGAAATGGTACATAAGCACTTGCTACAC
CATCGTGTGGTGCGGACCTGCTGCTGTGTACACGTTGCAATATGCGTGCG
ACCAAAAGTGGGCAAGCATCTCCCCCAAAAATGTGAAGAAATGGCAACTG
GCCGGATGTTCCGAGATTCACGAAAATCGGAATATTTATTATTCCTGTGT
TGTTTTTCTAGTGAAAACGGTGACGTGTGTGCGAAACATACTATATAATA
CTGCAGCTGCTGTTTGAGCCACACAGAGCGATAACTACAGGTGTTCGCCA
AAGTTACATGCGGACGACGGATAGGCTGGCACACATCGTCGCGATGTCGT
GTTGATGTGTACGCCCGGCTTCAACGCGTAGCAATAAGTTCAAAGAGCAA
TATACCTGTGTATGCAACAACAGCAGCACTTGAGCGCTTTCTTCCGACTT
CGAAGCTGCATCTTAGTTCTTGTCTGCTGCACACTACCTCAGCCACCGCC
CGTCCCACTTGGTATTGCGTTTGAAGCCTGCAACTGCTCTCACATTTACC
ATTGCATATGCACACATCCACTCTCAGACGGGGAACGAGGGGGGCGGCAG
CCGGCAGCCCCCTGCGTCCCCGGCCCTTGTATTATTTTTTCACGTTCTGC
GGGGCACCATGCTCCTGAAAACGATGGTATCCTTTAAGCGAGGACGACTC
TTCTTACACCTTGCACGCCGTGTAAGGGCGGTAATGTGGACGTGCGTGAC
TGATCAAATTTTAGCCCATGCGTGTCCAGGTTTCGCCCATAGGAAAGAGT
ACAACACACGGCGGGTGCCCGAGGATGGTGCCCATTGCAAAGCTAGCAAG
ACACGTCGTGTAACTACTTCTAGTTGGGGGACATTTTCTGCACTGCTGTC
GGGACGATGCAGTGATTGGCGGCGCGGTCTGCATTATCTTCCAAGTGTCC
GAATAGCTCTACCTGCCGTACTTGGATACCGGCTCCTGATTAGCACAGCA
CCCGTGGAGCCGTGTTCGTTTTTGCGCCGATGTTTTGCGGTGATGGATGA
CACCCTTGCCGCCGCCGCCGCCGCCTCCGCCGCCCCATGTGCAGGAGCGC
CAGGAATCAGCTCCGCGAGAGGGGGAAGACGAAATCCGGCTCCCAGTCAT
CAGTGTCTACGGTGGCGTCTACGACAAAGAGTACCAAGGCCAAGGGTGCC
AAGGAGGAACGGGGGGGCAAGAAAGGAAGATCGGAACGGAGCTCGGGTAA
GCTTAAGATATGGGAGGATGAAGGGGGGGGGGGGGGGGGCGTACTCTTTA
TAATAGCGGTTAGACCATTGACCACGCGTCTTCGAGAGGACAGAGCATTG
TTCCCACAGGGCCGAACACCGATGGCCGATCGTTCCTTCCTGCTTTGCCA
AAGGTGGCTCAAAAGTGTTTTCCCTAGCCTATCTATCCTATCGATATCAC
TTCCCTTCCCGCCTCTTCACCCCACTTAGTATGTCCCAGTACAGCTACCG
CCTTGTCCTGGCTATTCTATGCCTCAAACATCTCCCTGTATCTCCCTTCT
ACTTTTCCCAGCTCAGTCATGTACACTTCCATCTCCTTCTTGTACAACGG
ACATTCCGTAACTACATGAACCCGGTCTTCGCACTCGTAACCGACATTTG
AACTTGTCGTCTTGACCGTCTACCTCCCCATATCTTCGTCTACATTCTCA
AAGGCAATGTCCCCGGTCCTGAATTAACCTTCAGCTTGTCCGGTCCATGT
GGGTACTCCTTGAACCCTATTCCCAACATTCCGTACACATCTAGACCCTC
CTTGTACTTGGTTTTTTGAGTGATATTCTGTTCTTTTCTCTCGGCAAAAG
CAATAGATGTCTTCTTGAACCCCGATAGACCTTCCGTTTCCAGCGTATCA
CCTTCTTCGTCAATTTCGAACTCCTTCAATACGTCCTCTGCAACCTTGAC
CCACTCCGTGGGTTGCTTACCCATCTTGTTGTTTGCCCACTTTGCGTCCC
AAGCTATTCTCGGCAACCTCTCCTCTCCCATCCCGTACATGCGATACTTC
CATTTTAGCTTCCTTGCGTCTCTTCCAGATCGTAGGGATTGGATCCCCAG
TGCTGCCCTGACGGATGTATTACTTGTGGGCTTGGAGCATCCTATTGTAG
GATGGTTTTCCCTGCTTTCATCTGCGCCGCCTCGAGCTTTTGACTACTTG
TTATATCCTTCCCATCCTTCTCCAGCGCACTGTACATAGCGGCGGTGTGA
TTGCGCTCTTCAAAACTGTCAATTTTGATGCGTATATCGAGGTGCCGGTT
TGCGAGTATTGGGTGCGACTCGCCTGCTCGTGCTTTGCCCTTTCAGCTCC
TTGGACATGTGTGCATTCCACGAACAGCTTGGATACGGGGGATGGGGGGG
GTACATATTTTTTGGGAGTGTTGCTTAGTCGTCGGCCATCTCCGGAGACC
GCAGACACCGCCGTGCTGTGTGTAGCGCCGGGCACCTTCCATGCATTCAT
GAGACCTACGACTGGACAGCGACATGTCCTCTCCCCCCCTTCCCGTCCGC
TGCTGCTGCTCCTCCGTTGCGACTTGATTCTTTTGATTGTTGTACAGCCC
GTGAAGGTAACCCCACACGCGGAACCTCCCCGCGCCCTAGCGCGCCGCGC
CAGGCGAGGGCTTCGCAGCGGCTCTCGAGCGGGACGGCGGTGTCTGGCGG
GGGAGCGGGCACCGCTAGCGGCGGTGGGGCGGGGGCATCGGCGGCGGGGG
CGGCTGCTGTGGGGGTCGACACGGCTCGTGAGTCTGTGTCCCGGCGTGCC
AGTGCCGGGAGTTCCGTTCGGCTCTCCTCGCGCAAGCGTTAAGGGGGCTG
GGGTCGGGACACACGGCTGCGATTGAAGGCGGGGGGGGGGGGGATCCTGG
ACCCAAGAGTTTCTGGACAATGGTCCCCCGGTGGAAGTCGAGAGTGTTTC
ATCAGGCCAGACTGAAGGAACGGAGAGCTTCGCTTTTTTTCGATGCAACG
GGGGGTCCCGACGCCTCTGCAATAGAACGAATCCTCGACTGCGGGTTGCG
CGATGGCAAGGAGGGGGTGAGGTTGTAACTGTTTCCTACTATGAGAGAAT
GCCGATTTAGTTTTTGGTTCCTTCCCAAGTTCCGTTTGTATGTAGTTTGG
GATGTTTTTGGTTTTGGTTTTGGGGAGAGCGCTCGTCCAATAAGCGGGTC
GGAAAGAAGTTTCTTCTTTTTTTTTTTTCTGACACTTGCCCCGACTCCCA
ACGTTGTCACGTGACCCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at chr_00:6371873..6376100+

>Ec-00_004600.1 ID=Ec-00_004600.1|Name=Ec-00_004600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=432bp|location=Sequence derived from alignment at chr_00:6371873..6376100+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGAGCTGGTTGCGGGCATGGTCCGGGCGAGGAGCGCCAGGAATCA
GCTCCGCGAGAGGGGGAAGACGAAATCCGGCTCCCAGTCATCAGTGTCTA
CGGTGGCGTCTACGACAAAGAGTACCAAGGCCAAGGGTGCCAAGGAGGAA
CGGGGGGGCAAGAAAGGAAGATCGGAACGGAGCTCGGCCCGTGAAGGTAA
CCCCACACGCGGAACCTCCCCGCGCCCTAGCGCGCCGCGCCAGGCGAGGG
CTTCGCAGCGGCTCTCGAGCGGGACGGCGGTGTCTGGCGGGGGAGCGGGC
ACCGCTAGCGGCGGTGGGGCGGGGGCATCGGCGGCGGGGGCGGCTGCTGT
GGGGGTCGACACGGCTCGTGAGTCTGTGTCCCGGCGTGCCAGTGCCGGGA
GTTCCGTTCGGCTCTCCTCGCGCAAGCGTTAA

Synonyms

The feature 'Ec-00_004600.1' has the following synonyms


Synonym
Esi361_0037
Esi_361_0037