Ec-00_004580.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004580.1
Unique NameEc-00_004580.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length56
Homology
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BLAST of Ec-00_004580.1 vs. uniprot
Match: D8LLH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH1_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.420e-27
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 MKAKGSRRRVERELLAMRDEAQQQASGGAYRSSSHRDRGASRKQQAFCNPSKSDR 165
            MKAKGSRRRVERELLAMRDEAQQQASGGAYRSSSHRDRGASRKQQAFCNPSKSDR
Sbjct:    1 MKAKGSRRRVERELLAMRDEAQQQASGGAYRSSSHRDRGASRKQQAFCNPSKSDR 55
The following BLAST results are available for this feature:
BLAST of Ec-00_004580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLH1_ECTSI2.420e-27100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6361270..6361967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length168
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_004580.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004580Ec-00_004580Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6361270..6361967 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004580.1.1Ec-00_004580.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6361270..6361405 +
Ec-00_004580.1.2Ec-00_004580.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6361936..6361967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004580.1CDS:Ec-00_004580.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6361270..6361405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004580.1Ec-00_004580.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6361270..6361967 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004580.1 ID=Ec-00_004580.1|Name=Ec-00_004580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=56bp
MKAKGSRRRVERELLAMRDEAQQQASGGAYRSSSHRDRGASRKQQAFCNP
SKSDR*
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spliced messenger RNA

>Ec-00_004580.1 ID=Ec-00_004580.1|Name=Ec-00_004580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=168bp|location=Sequence derived from alignment at chr_00:6361270..6361967+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCGAAGGGCTCGCGTCGGCGCGTGGAGCGCGAGCTCCTGGCGAT
GCGAGACGAGGCCCAGCAGCAGGCGAGCGGGGGCGCGTATCGCAGCAGCA
GTCATCGGGATCGGGGAGCGTCGCGAAAGCAACAAGCATTTTGCAACCCT
TCCAAGAGCGACCGGTGA
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protein sequence of Ec-00_004580.1

>Ec-00_004580.1 ID=Ec-00_004580.1|Name=Ec-00_004580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=56bp
MKAKGSRRRVERELLAMRDEAQQQASGGAYRSSSHRDRGASRKQQAFCNP
SKSDR*
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mRNA from alignment at chr_00:6361270..6361967+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004580.1 ID=Ec-00_004580.1|Name=Ec-00_004580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=698bp|location=Sequence derived from alignment at chr_00:6361270..6361967+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGGCGAAGGGCTCGCGTCGGCGCGTGGAGCGCGAGCTCCTGGCGAT
GCGAGACGAGGCCCAGCAGCAGGCGAGCGGGGGCGCGTATCGCAGCAGCA
GTCATCGGGATCGGGGAGCGTCGCGAAAGCAACAAGGTGGGTTTTTTGTG
CGCCAAAGAGGGAGAAACAGAGAGCCAGTAGTTGGATACAATCGTTGAAA
GCGACGGACTACAGACCGCATGTTTTTTTCCGTCTAGCGGAGGCCGACAA
CGAAAGCAGCGCGTGCCTCCGCGCGCCGTCACGGCGGAAGATACCTCAGG
TGCCCACAAGCGGTGGCAGCGCGTGGTCTCGGTCCAGTCCCAAAAGATGG
AATATTTTCGGACGGCTCGCCTATGTGTGTGTTTGCATATTTTAGGTACG
CGGCGGCGGTGTGTAGTATGTAGTATATCATTGCTGTGCTGCAGATGCAC
AGCAATGCAGCGTGTCCACCAAAAACTTGTACTCTACATGTACCTAACAC
AGAACTATGTGGCGAGTTTTGCGATGTCGTTGCAGATACCTGTTAGGCGC
GTTAAGCTCGCGGGATTTCGGGTTTGGATTTTTATCAACGAGGCATCTTC
CTCATTTGGGTGCACCCCTCTTCTATTCCATATTTCAATATTGCGACGCC
TTTCGCGCACTCGCAGCATTTTGCAACCCTTCCAAGAGCGACCGGTGA
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Coding sequence (CDS) from alignment at chr_00:6361270..6361967+

>Ec-00_004580.1 ID=Ec-00_004580.1|Name=Ec-00_004580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=168bp|location=Sequence derived from alignment at chr_00:6361270..6361967+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGGCGAAGGGCTCGCGTCGGCGCGTGGAGCGCGAGCTCCTGGCGAT
GCGAGACGAGGCCCAGCAGCAGGCGAGCGGGGGCGCGTATCGCAGCAGCA
GTCATCGGGATCGGGGAGCGTCGCGAAAGCAACAAGCATTTTGCAACCCT
TCCAAGAGCGACCGGTGA
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Synonyms
The feature 'Ec-00_004580.1' has the following synonyms
Synonym
Esi0361_0013
Esi_0361_0013