Ec-00_004550.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_004550.3
Unique Name	Ec-00_004550.3
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	129

Homology

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BLAST of Ec-00_004550.3 vs. uniprot
Match: D8LLG8_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG8_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 9.380e-104
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1

Query:  472 GRDALERLRGKQQQRRQRQYGTIATNFLASFFPLDVTCPRSVEVFREDCVNGHLGGRVDILFNNAGVCFPEQDGNGPQNNRAAAAGILRETLAVNFFGALEVVEACVPALQAAAPMVARKEKKKAALMLEDNGATSTMTSLKPPTVVWISSGDGELCFLGSKWRGLLAEAQSLE 993
            GRDALERLRGKQQQRRQRQYGTIATNFLASFFPLDVTCPRSVEVFREDCVNGHLGGRVDILFNNAGVCFPEQDGNGPQNNRAAAAGILRETLAVNFFGALEVVEACVPALQAAAPMVARKEKKKAALMLEDNGATSTMTSLKPPTVVWISSGDGELCFLGSKWRGLLAEAQSLE
Sbjct:   91 GRDALERLRGKQQQRRQRQYGTIATNFLASFFPLDVTCPRSVEVFREDCVNGHLGGRVDILFNNAGVCFPEQDGNGPQNNRAAAAGILRETLAVNFFGALEVVEACVPALQAAAPMVARKEKKKAALMLEDNGATSTMTSLKPPTVVWISSGDGELCFLGSKWRGLLAEAQSLE 264

[Close]

BLAST of Ec-00_004550.3 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 5.360e-98
Identity = 221/377 (58.62%), Postives = 222/377 (58.89%), Query Frame = -2

Query: 1525 VTVGELISSLSDRGRWDDAQRVVEIAEKTGAIPASSLDSDFEVDVSQLPPAIAKVKVRDLGGPAGYFGVRKHAVHVHEVGLGGESSWLAGHLFFLLVFLLCESHGKRTYMADNEKCNT*PATMPIRRYTPRFKAMGKIAASVNHGAQRWNAGRYGF*AQCNDLLVSPLPRLQVYFWLIASTLERR*PRRPQL*IPNSAAPPLPPPPQTPQARGTLQRILDVWRESSGNAEGGGATSSPLEDLVFVTGTGSATKPSPAPDTAAPWAGDVIDDDGSAGDGKDIVIDVTVSDDTSTTSTESARAEPTXXXSASVETMGTAASGAAAGRGGWRVARFSDRSFGLGRVLVEHLRTAFNPPLKAQPREFVAGCLVVKVEDFES 2655
            VTVGELISSLSDRGRWDDAQRVVEIAEKTGAIPASSLDSDFEVDVSQLPPAIAKVK                                                                                                                                                          ARGTLQRILDVWRESSGNAEGGGATSSPLEDLVFVTGTGSATKPSPAPDTAAPWAGDVIDDDGSAGDGKDIVIDVTVSDDTSTTSTESARAEPTXXXSASVETMGTAASGAAAGRGGWRVARFSDRSFGLGRVLVEHLRTAFNPPLKAQPREFVAGCLVVKVED E+
Sbjct:  906 VTVGELISSLSDRGRWDDAQRVVEIAEKTGAIPASSLDSDFEVDVSQLPPAIAKVK----------------------------------------------------------------------------------------------------------------------------------------------------------ARGTLQRILDVWRESSGNAEGGGATSSPLEDLVFVTGTGSATKPSPAPDTAAPWAGDVIDDDGSAGDGKDIVIDVTVSDDTSTTSTESARAEPTXXXSASVETMGTAASGAAAGRGGWRVARFSDRSFGLGRVLVEHLRTAFNPPLKAQPREFVAGCLVVKVEDLET 1128

The following BLAST results are available for this feature:

BLAST of Ec-00_004550.3 vs. uniprot

BLAST of Ec-00_004550.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LLG8_ECTSI	9.380e-104	100.00	Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec...	[more]
D8LLG9_ECTSI	5.360e-98	58.62	PPR_long domain-containing protein n=2 Tax=Ectocar...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:6342255..6347355 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	3772
Hectar predicted targeting category	signal peptide
Gene id	Ec-00_004550.3

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_004550	Ec-00_004550	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 6342255..6347355 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004550.3	Ec-00_004550.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 6345303..6345689 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004550.3.1	Ec-00_004550.3.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6342255..6342727 +
Ec-00_004550.3.2	Ec-00_004550.3.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6342988..6343509 +
Ec-00_004550.3.3	Ec-00_004550.3.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6343810..6344139 +
Ec-00_004550.3.4	Ec-00_004550.3.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6344454..6344666 +
Ec-00_004550.3.5	Ec-00_004550.3.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6345122..6347355 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004550	5UTR:Ec-00_004550.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 6342255..6342727 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004550.3	CDS:Ec-00_004550.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 6345303..6345689 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004550	3UTR:Ec-00_004550.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 6345690..6347355 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:6342255..6347355+
coding sequence from alignment at chr_00:6342255..6347355+

mRNA sequence

>Ec-00_004550.3 ID=Ec-00_004550.3|Name=Ec-00_004550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=129bp
MVSTEAELVVVGSALALSVLVVDVSSETVTSITISLPSPALPSSSMTSPA
HGAAVSGAGEGFVALPVPVTKTRSSRGLEVAPPPSALPLLSRQTSRILCR
VPRACGVWGGGGRGGAAEFGIYSWGLRG*

spliced messenger RNA

>Ec-00_004550.3 ID=Ec-00_004550.3|Name=Ec-00_004550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3772bp|location=Sequence derived from alignment at chr_00:6342255..6347355+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GAGACGATAGCGCCTTTTCGTTCAAGCGTCGTGTGGTACACCGGGTCATG
CGTTGCTCTTCCTGCTTGCTTGTTATGCCGGCGCACTGGTCTCAGTTGCA
TTGCTTCCTGCTACCTCCCATAGCAGTGCCGTTGTCATCGGACCCACAGC
AGTGCTACGCGTCAAGGGCGCGAAGAGGCTTGCTTCACCGCCATCCTCGG
TGTATGCAAGGCTCGCACGCTTATGGGATTATACCCACCTTCAATAGCCG
CAACAAGTGGCGGGACAGAGACGATGCAATGGCCACCATGAGCCCGTGGG
AGAGTCGAGACGACAGCGGTGTCCCTGCGATGCTGGGCGGTGGTGATGAT
GGCGGCATCTTGAGAAACGTGATCGTGACGGGAGCAAATCGAGGCCTCGG
ATTTGCTATCGCCGATCGCATGCTGAAGCTCGGCAGCTACCGTGTCGTTC
TCGCTTGCCGTAACGAGCAAGAGGGCCGCGATGCGTTGGAGCGACTCCGG
GGGAAACAGCAACAGCGCCGGCAGCGCCAATACGGCACGATCGCAACGAA
TTTCTTGGCGTCCTTCTTCCCTCTTGACGTCACCTGCCCGAGAAGCGTCG
AGGTCTTCCGGGAGGACTGCGTGAATGGGCACCTTGGTGGAAGGGTTGAC
ATCCTGTTCAACAACGCGGGGGTGTGCTTCCCGGAACAGGACGGGAACGG
GCCACAAAACAACAGGGCGGCGGCCGCCGGCATTCTTCGGGAAACCCTTG
CGGTCAACTTTTTCGGCGCGCTCGAGGTAGTGGAAGCTTGTGTGCCGGCG
CTACAAGCGGCGGCACCAATGGTGGCGCGGAAAGAGAAGAAGAAGGCCGC
CTTGATGCTGGAAGATAATGGAGCCACATCGACCATGACGTCGCTGAAGC
CACCGACCGTTGTCTGGATTTCCAGTGGGGATGGGGAACTGTGTTTCCTC
GGGAGCAAGTGGCGTGGGCTGCTCGCGGAAGCCCAGAGTCTTGAGGACGT
AAAGTCGCCCTTGTCGGACCTGTTGGCCACCGCAACCGACACCATCACAA
CCACCTCGAAGCAGAACAGCACGGCCCCAGCAGGATCTCAACAAGAGGGA
GAACAAGGGCAAGTGGAAGAGATGGCGTTTGGGCCCACACCGGCCTATAG
CCTTTCTAAGGCTGCTGTCAACGCCGCCGTCCGCACGTGGGCGCCGTGTA
TTCAAGCTCCGACGGTGCCAGCAGAAGCGCCCGAAAACACCAAGTCCAGG
ACTGGCGTTCGGGGTGGAGGGGTGCGGCTCGTGGCCGTGTGCCCCGGCGA
TGTTCTTACTCGCATGACCTCAAAGGAGGAGATGGCAAGAGGAGACGCGG
TTTCCCCCGAAGAGGCGGCAGTTGAGGTGGTGGACCTCGCGCTTAGTTCG
GCCAACGATATCCCGGCTGGGAGGTTCTACAGGCATGGAGAGGAGATCGG
GTGGTAATTGACCAGGGTCTACGTGATGATGACAGCCGCGTAAGGGGATC
GATGGCGAAAACGCACGCGGCTGCAGGAAGACTCAAAGGTCTTCCACCTT
CACCACGAGACACCCGGCCACAAACTCCCTCGGTTGCGCCTTAAGCGGGG
GATTAAACGCCGTCCTGAGGTGTTCAACTAACACCCGCCCAAGACCGAAA
CTGCGGTCCGAAAATCGGGCCACTCGCCACCCTCCTCGACCCGCGGCGGC
GCCTGAAGCCGCTGTTCCCATGGTCTCCACGGAGGCAGAGCTTGTCGTTG
TCGGTTCGGCCCTGGCGCTCTCGGTGCTCGTGGTTGACGTGTCGTCGGAG
ACGGTAACATCGATAACGATATCTTTACCGTCGCCAGCGCTACCATCGTC
GTCGATGACGTCGCCAGCCCATGGAGCGGCGGTGTCGGGGGCGGGGGAGG
GCTTCGTGGCGCTCCCCGTACCAGTTACGAAAACGAGGTCCTCGAGAGGA
CTGGAGGTAGCTCCGCCGCCTTCGGCGTTGCCGCTGCTTTCCCGCCAGAC
GTCGAGAATTCTTTGCAGGGTGCCTCGTGCCTGTGGTGTTTGGGGGGGGG
GGGGGAGGGGGGGGGCAGCGGAATTTGGAATTTACAGTTGGGGTCTGCGA
GGCTAGCCGCCGTTCCAAGGTAGATGCGATCAACCAAAAGTAAACCTGCA
ATCTTGGCAGGGGGCTAACGAGTAAATCGTTGCATTGTGCTCAAAAGCCG
TAGCGTCCTGCGTTCCACCGCTGTGCCCCATGGTTTACTGACGCGGCGAT
CTTTCCCATAGCCTTAAACCGAGGGGTGTACCTCCTGATGGGCATCGTGG
CTGGTCAAGTATTACACTTCTCGTTGTCGGCCATATATGTTCGTTTTCCG
TGACTTTCACAAAGCAAAAACACCAACAGAAAAAATAAATGACCCGCGAG
CCACGAGCTTTCGCCACCCAAACCAACTTCGTGCACATGCACCGCGTGTT
TTCTCACACCAAAATAGCCTGCGGGACCCCCGAGATCGCGCACCTTGACT
TTGGCGATCGCAGGTGGCAGCTGGCTCACGTCCACCTCGAAGTCGCTGTC
CAGAGACGACGCCGGGATGGCTCCCGTCTTTTCCGCGATCTCCACGACGC
GCTGGGCGTCGTCCCACCTCCCTCGGTCAGAGAGGGAAGAGATGAGCTCT
CCGACGGTCACCCCGTCCGGCGTGAGGCCGGCCTCGACCATGGATGCCAG
CAGTTTCATCGACAGCTTGTGCTGCCCCCCGCGCCTGGTTGAGGAGGTGG
AAGCAAGCAGCCGCAACAGGAGTTGAGTTCTAGACGCGGGACCACCGTCT
CGGGGTAACGTGCATACGGCGAGATATCCGCCCGTGCGGTCGAGTCGTCG
TCAAGATCAATTTACATCTTGTCCACTAATATTCTTGAACTTGTAGCCAG
GAGTCCGCTGATGAATAGTAGACTACCAAAAGGTAATAATAGGTAAATCT
TCCAGAAAAGACCAGCTAAGATACGCAAGCCGCGCACCTCGCAGCGCGTA
TAACGGCGTTGAAGCTGGCAGGGTCGGGCGACATCCCCTCCTCCAAGAGC
TTCGAGTGCAGAGCCACCGCCTCCTCCCACTTCCTTGCCCGTCCACACGC
CGCGATGGCCGCAGTGTAGCTCCGGATGTTCGGCTGAGTGCGGGGCCCGG
CTTCACGCATTTCGTCCAGCAAGGACAGCGCTCTGTCCCACTTGCCTGCT
TGAGGGAAGATGGGGGAGGGGGGGGGAGAGTACGGACCCGCACATGGAGT
ACCAGCCTATTGTCAGGATATTTAATGACGCTGACAACAACACCGCCGTT
ACATCATGAACGAGATCAAGCAACCAAACTGTCATACACGAAGTCAGCAA
ATGGAGCAACAAGAGCACCACCACCTGGAAACTCCCTCCACCATCAGTTC
ACCCTACACTACCACCACGCTCGCTGTCGCATGCTGCATCACAGTCCGTG
ACAGGGCCCCTTTTTGCAACGCCAAAGCCATGGGAGATCCCGCGCTCAGG
ACGAAAACTACCCAAACCAATTCCGGGAAGGAAGATGAAAATCACCGACC
ACATGCTTGACACCACGGAACCAACAAGACACATAACAAGCCGTCCACAA
CTGCAACAAATGGCTTGATTCGACGACCGGCAAAGGCCGTCACTGCGCTC
GCTGATGTCACAACTACGTGTCGTCCGCCTCTCGCGTACATTGAACAGTA
CTAATGAGCCTTTTGTGAACGCAGCCTTCGAGCACGAAAACCTCCCTCTC
GTGGTCAAACGCTTTCGCTTCA

protein sequence of Ec-00_004550.3

>Ec-00_004550.3 ID=Ec-00_004550.3|Name=Ec-00_004550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=129bp
MVSTEAELVVVGSALALSVLVVDVSSETVTSITISLPSPALPSSSMTSPA
HGAAVSGAGEGFVALPVPVTKTRSSRGLEVAPPPSALPLLSRQTSRILCR
VPRACGVWGGGGRGGAAEFGIYSWGLRG*

mRNA from alignment at chr_00:6342255..6347355+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_004550.3 ID=Ec-00_004550.3|Name=Ec-00_004550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5101bp|location=Sequence derived from alignment at chr_00:6342255..6347355+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GAGACGATAGCGCCTTTTCGTTCAAGCGTCGTGTGGTACACCGGGTCATG
CGTTGCTCTTCCTGCTTGCTTGTTATGCCGGCGCACTGGTCTCAGTTGCA
TTGCTTCCTGCTACCTCCCATAGCAGTGCCGTTGTCATCGGACCCACAGC
AGTGCTACGCGTCAAGGGCGCGAAGAGGCTTGCTTCACCGCCATCCTCGG
TGTATGCAAGGCTCGCACGCTTATGGGATTATACCCACCTTCAATAGCCG
CAACAAGTGGCGGGACAGAGACGATGCAATGGCCACCATGAGCCCGTGGG
AGAGTCGAGACGACAGCGGTGTCCCTGCGATGCTGGGCGGTGGTGATGAT
GGCGGCATCTTGAGAAACGTGATCGTGACGGGAGCAAATCGAGGCCTCGG
ATTTGCTATCGCCGATCGCATGCTGAAGCTCGGCAGCTACCGTGTCGTTC
TCGCTTGCCGTAACGAGCAAGAGGTGCGCATGTAGGCTCTGCTCCTGCCA
GATGAATGCTGCTGCTGCTGCTGCGGCTGCTGTCTCTACTGCTGCTGCTG
CTGCTCCACTGCCTCTGCTACATAGCATAAATGTTCTGTACTCCGTAACC
GATTTTACACCAGCCTTTCGTGACCTCATGCGCAAAGATCGAGACAGCGG
AGATGCACGTTTCACCCTGACACTGCCAAAAGCCACCTTGGTAGATCCGT
TCTTGCAACTTGGATCATTTTCCTGCCATGCAGGGCCGCGATGCGTTGGA
GCGACTCCGGGGGAAACAGCAACAGCGCCGGCAGCGCCAATACGGCACGA
TCGCAACGAATTTCTTGGCGTCCTTCTTCCCTCTTGACGTCACCTGCCCG
AGAAGCGTCGAGGTCTTCCGGGAGGACTGCGTGAATGGGCACCTTGGTGG
AAGGGTTGACATCCTGTTCAACAACGCGGGGGTGTGCTTCCCGGAACAGG
ACGGGAACGGGCCACAAAACAACAGGGCGGCGGCCGCCGGCATTCTTCGG
GAAACCCTTGCGGTCAACTTTTTCGGCGCGCTCGAGGTAGTGGAAGCTTG
TGTGCCGGCGCTACAAGCGGCGGCACCAATGGTGGCGCGGAAAGAGAAGA
AGAAGGCCGCCTTGATGCTGGAAGATAATGGAGCCACATCGACCATGACG
TCGCTGAAGCCACCGACCGTTGTCTGGATTTCCAGTGGGGATGGGGAACT
GTGTTTCCTCGGGAGCAAGTGGCGTGGGCTGCTCGCGGAAGCCCAGAGTC
TTGAGGTGACGGGTGTTCAGTGTGAAGCTTTAAATTCAGCAGTGTTCGGG
CGGGGTGGTTCGAGACATTCCGCCAGAAAGTCTAGCTCCGATGGCGAGCC
GAAGCAATCTACTCGCTTCGAGGCATCCGTGAAGTGTTGTAAGAAATTGG
TGCAAACGAAGTCGTCTGTCCTATCGAAAGTACGCCTTCCGTGTGGGTGC
AGTTCAACCCAACGTGCATCTCCTATGCGCTGTGCAGAGTAGTCTTGCTC
CAACGTTTCAGCGACTAACCCCGAACCTCCCCCATGGCTCTCCCGAAAAC
AACAGGACGTAAAGTCGCCCTTGTCGGACCTGTTGGCCACCGCAACCGAC
ACCATCACAACCACCTCGAAGCAGAACAGCACGGCCCCAGCAGGATCTCA
ACAAGAGGGAGAACAAGGGCAAGTGGAAGAGATGGCGTTTGGGCCCACAC
CGGCCTATAGCCTTTCTAAGGCTGCTGTCAACGCCGCCGTCCGCACGTGG
GCGCCGTGTATTCAAGCTCCGACGGTGCCAGCAGAAGCGCCCGAAAACAC
CAAGTCCAGGACTGGCGTTCGGGGTGGAGGGGTGCGGCTCGTGGCCGTGT
GCCCCGGCGATGTTCTTACTCGCATGACCTCAAAGGTATTTCCAGCACCG
CCTTACATAGCGAAAGGTGGAGTGAAGAATAGGTTTGTTCAGCTCTTCGT
ATTGCTCACCTAACTAGACTTCTCGTTGGGTAGCCGATTGTTATGGGGAG
CACGTATGACCCTGTTCCCAGGTTTCGGCTTTGGTATTAACCCGCCTAAC
GGTGTTGGTGAAAAGCAAGCCTTCGGTGCTCAAACTACTGCCGAATGTTC
GGTACGTCGTGGTTTGAGAGGATTATTTGCCAAGCAAAGCCAGAAACACA
AAGTACAAAATGCACCACCGCACCCTGTCTGTTGTTTATTTGAGCGAAGG
AGGAGATGGCAAGAGGAGACGCGGTTTCCCCCGAAGAGGCGGCAGTTGAG
GTGGTGGACCTCGCGCTTAGTTCGGCCAACGATATCCCGGCTGGGAGGTT
CTACAGGCATGGAGAGGAGATCGGGTGGTAATTGACCAGGGTCTACGTGA
TGATGACAGCCGCGTAAGGGGATCGATGGCGAAAACGCACGCGGCTGCAG
GAAGACTCAAAGGCAAGATAAGTCCACCATGATGCTCTGCCCCGTGAGAG
AAATATAACCCCATGTTGCTACATGTGCCACAGCCATCGGCGTGGACTAC
GCGTACGATAGGTAGCACGGAGGCAAACGAAATTCCCTTCGTCTCTTCTT
TCAGCCGGTTCTTTTTCGGCGGGCAAGGCCTCTATTGTGGCGCAACGGGA
GCACAACAAAAGCCGTTTGGATAGGGCGGAGTGGATCGCCAACGTCCTGC
GGGGATCGATTGCCTGGCTGCTGTCAAAGCTTAGTCTTGGGCAAGGCGGA
TCCGTAATAGCTCTTCCATCATTTTTTTTGTTTCTTCAGAAAACGCACAA
CACACAACCTCCCACCTCGCACCCCTTCTCTGCCCCGCTACCTCCTCTAA
CCCTCTCTCCTCTCACACCCGGCTACAATGACCCCCCCCCCTCCTGCGCT
GCTGCCCATGTCTCCAGGTCTTCCACCTTCACCACGAGACACCCGGCCAC
AAACTCCCTCGGTTGCGCCTTAAGCGGGGGATTAAACGCCGTCCTGAGGT
GTTCAACTAACACCCGCCCAAGACCGAAACTGCGGTCCGAAAATCGGGCC
ACTCGCCACCCTCCTCGACCCGCGGCGGCGCCTGAAGCCGCTGTTCCCAT
GGTCTCCACGGAGGCAGAGCTTGTCGTTGTCGGTTCGGCCCTGGCGCTCT
CGGTGCTCGTGGTTGACGTGTCGTCGGAGACGGTAACATCGATAACGATA
TCTTTACCGTCGCCAGCGCTACCATCGTCGTCGATGACGTCGCCAGCCCA
TGGAGCGGCGGTGTCGGGGGCGGGGGAGGGCTTCGTGGCGCTCCCCGTAC
CAGTTACGAAAACGAGGTCCTCGAGAGGACTGGAGGTAGCTCCGCCGCCT
TCGGCGTTGCCGCTGCTTTCCCGCCAGACGTCGAGAATTCTTTGCAGGGT
GCCTCGTGCCTGTGGTGTTTGGGGGGGGGGGGGGAGGGGGGGGGCAGCGG
AATTTGGAATTTACAGTTGGGGTCTGCGAGGCTAGCCGCCGTTCCAAGGT
AGATGCGATCAACCAAAAGTAAACCTGCAATCTTGGCAGGGGGCTAACGA
GTAAATCGTTGCATTGTGCTCAAAAGCCGTAGCGTCCTGCGTTCCACCGC
TGTGCCCCATGGTTTACTGACGCGGCGATCTTTCCCATAGCCTTAAACCG
AGGGGTGTACCTCCTGATGGGCATCGTGGCTGGTCAAGTATTACACTTCT
CGTTGTCGGCCATATATGTTCGTTTTCCGTGACTTTCACAAAGCAAAAAC
ACCAACAGAAAAAATAAATGACCCGCGAGCCACGAGCTTTCGCCACCCAA
ACCAACTTCGTGCACATGCACCGCGTGTTTTCTCACACCAAAATAGCCTG
CGGGACCCCCGAGATCGCGCACCTTGACTTTGGCGATCGCAGGTGGCAGC
TGGCTCACGTCCACCTCGAAGTCGCTGTCCAGAGACGACGCCGGGATGGC
TCCCGTCTTTTCCGCGATCTCCACGACGCGCTGGGCGTCGTCCCACCTCC
CTCGGTCAGAGAGGGAAGAGATGAGCTCTCCGACGGTCACCCCGTCCGGC
GTGAGGCCGGCCTCGACCATGGATGCCAGCAGTTTCATCGACAGCTTGTG
CTGCCCCCCGCGCCTGGTTGAGGAGGTGGAAGCAAGCAGCCGCAACAGGA
GTTGAGTTCTAGACGCGGGACCACCGTCTCGGGGTAACGTGCATACGGCG
AGATATCCGCCCGTGCGGTCGAGTCGTCGTCAAGATCAATTTACATCTTG
TCCACTAATATTCTTGAACTTGTAGCCAGGAGTCCGCTGATGAATAGTAG
ACTACCAAAAGGTAATAATAGGTAAATCTTCCAGAAAAGACCAGCTAAGA
TACGCAAGCCGCGCACCTCGCAGCGCGTATAACGGCGTTGAAGCTGGCAG
GGTCGGGCGACATCCCCTCCTCCAAGAGCTTCGAGTGCAGAGCCACCGCC
TCCTCCCACTTCCTTGCCCGTCCACACGCCGCGATGGCCGCAGTGTAGCT
CCGGATGTTCGGCTGAGTGCGGGGCCCGGCTTCACGCATTTCGTCCAGCA
AGGACAGCGCTCTGTCCCACTTGCCTGCTTGAGGGAAGATGGGGGAGGGG
GGGGGAGAGTACGGACCCGCACATGGAGTACCAGCCTATTGTCAGGATAT
TTAATGACGCTGACAACAACACCGCCGTTACATCATGAACGAGATCAAGC
AACCAAACTGTCATACACGAAGTCAGCAAATGGAGCAACAAGAGCACCAC
CACCTGGAAACTCCCTCCACCATCAGTTCACCCTACACTACCACCACGCT
CGCTGTCGCATGCTGCATCACAGTCCGTGACAGGGCCCCTTTTTGCAACG
CCAAAGCCATGGGAGATCCCGCGCTCAGGACGAAAACTACCCAAACCAAT
TCCGGGAAGGAAGATGAAAATCACCGACCACATGCTTGACACCACGGAAC
CAACAAGACACATAACAAGCCGTCCACAACTGCAACAAATGGCTTGATTC
GACGACCGGCAAAGGCCGTCACTGCGCTCGCTGATGTCACAACTACGTGT
CGTCCGCCTCTCGCGTACATTGAACAGTACTAATGAGCCTTTTGTGAACG
CAGCCTTCGAGCACGAAAACCTCCCTCTCGTGGTCAAACGCTTTCGCTTC
A

Coding sequence (CDS) from alignment at chr_00:6342255..6347355+

>Ec-00_004550.3 ID=Ec-00_004550.3|Name=Ec-00_004550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=387bp|location=Sequence derived from alignment at chr_00:6342255..6347355+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTCTCCACGGAGGCAGAGCTTGTCGTTGTCGGTTCGGCCCTGGCGCT
CTCGGTGCTCGTGGTTGACGTGTCGTCGGAGACGGTAACATCGATAACGA
TATCTTTACCGTCGCCAGCGCTACCATCGTCGTCGATGACGTCGCCAGCC
CATGGAGCGGCGGTGTCGGGGGCGGGGGAGGGCTTCGTGGCGCTCCCCGT
ACCAGTTACGAAAACGAGGTCCTCGAGAGGACTGGAGGTAGCTCCGCCGC
CTTCGGCGTTGCCGCTGCTTTCCCGCCAGACGTCGAGAATTCTTTGCAGG
GTGCCTCGTGCCTGTGGTGTTTGGGGGGGGGGGGGGAGGGGGGGGGCAGC
GGAATTTGGAATTTACAGTTGGGGTCTGCGAGGCTAG

Synonyms

The feature 'Ec-00_004550.3' has the following synonyms


Synonym
Esi0361_0009
Esi_0361_0009