Ec-00_004530.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004530.1
Unique NameEc-00_004530.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length100
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_004530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6331603..6332249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length300
Hectar predicted targeting categoryother localisation
Gene idEc-00_004530.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004530Ec-00_004530Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6331603..6332249 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004530.1.2Ec-00_004530.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6331603..6331896 -
Ec-00_004530.1.1Ec-00_004530.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6332244..6332249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004530.1CDS:Ec-00_004530.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6331603..6331896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004530.1Ec-00_004530.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6331603..6332249 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004530.1 ID=Ec-00_004530.1|Name=Ec-00_004530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=100bp
MQQRNSKRRERSCFLSKRERSQNILHHSQQGADRGSSLHIGCARVHFIWA
GEISAAAGKAHGGAACRCDAWEEGEEEGEEEEWLSASGAGDLGLPADRW*
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spliced messenger RNA

>Ec-00_004530.1 ID=Ec-00_004530.1|Name=Ec-00_004530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=300bp|location=Sequence derived from alignment at chr_00:6331603..6332249- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAGCGTAATTCCAAGCGCAGGGAACGTTCGTGCTTCCTCTCCAA
GCGGGAACGTTCTCAGAACATTCTTCACCATTCTCAGCAAGGTGCGGATC
GTGGCTCCTCGCTTCACATAGGGTGTGCCAGAGTGCACTTCATCTGGGCT
GGAGAGATCAGTGCGGCAGCTGGAAAGGCGCATGGTGGTGCCGCATGCCG
CTGCGATGCATGGGAGGAGGGGGAAGAGGAGGGGGAGGAGGAGGAGTGGC
TTTCGGCCAGCGGTGCTGGCGACCTTGGTCTGCCTGCTGATCGCTGGTAG
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protein sequence of Ec-00_004530.1

>Ec-00_004530.1 ID=Ec-00_004530.1|Name=Ec-00_004530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=100bp
MQQRNSKRRERSCFLSKRERSQNILHHSQQGADRGSSLHIGCARVHFIWA
GEISAAAGKAHGGAACRCDAWEEGEEEGEEEEWLSASGAGDLGLPADRW*
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mRNA from alignment at chr_00:6331603..6332249-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004530.1 ID=Ec-00_004530.1|Name=Ec-00_004530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=647bp|location=Sequence derived from alignment at chr_00:6331603..6332249- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGGTATGTATGTATATGAACTGCCAACGAACCAGCAACGGGCATGG
GTTTCCACGCTCCCTGTTGCATGTATGTACCTATGTACGGGTATACTAAT
GCCTGTGATTATCACAAGCCGTTCAGTGGACAGTCAGAAAACCGGGACGC
TTCGTTGTGGTACTGCAGCGACCGAGCCAGAATATCATGGTACGCAAGCT
CGCGACCTTCGCCATATTCCTAGCATCTAGGTCGCACCACCGTGCCCGTG
CTTTGTTCGTACGTGAAACTGCATTCCTCTCGGTCCTGGGTTGCATGGTT
GGGTTCTCCGGTGTGATTTGCATGTATGCGTTCTCACGGCACCGAGCGCA
CAGCAGCGTAATTCCAAGCGCAGGGAACGTTCGTGCTTCCTCTCCAAGCG
GGAACGTTCTCAGAACATTCTTCACCATTCTCAGCAAGGTGCGGATCGTG
GCTCCTCGCTTCACATAGGGTGTGCCAGAGTGCACTTCATCTGGGCTGGA
GAGATCAGTGCGGCAGCTGGAAAGGCGCATGGTGGTGCCGCATGCCGCTG
CGATGCATGGGAGGAGGGGGAAGAGGAGGGGGAGGAGGAGGAGTGGCTTT
CGGCCAGCGGTGCTGGCGACCTTGGTCTGCCTGCTGATCGCTGGTAG
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Coding sequence (CDS) from alignment at chr_00:6331603..6332249-

>Ec-00_004530.1 ID=Ec-00_004530.1|Name=Ec-00_004530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=300bp|location=Sequence derived from alignment at chr_00:6331603..6332249- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCAGCGTAATTCCAAGCGCAGGGAACGTTCGTGCTTCCTCTCCAA
GCGGGAACGTTCTCAGAACATTCTTCACCATTCTCAGCAAGGTGCGGATC
GTGGCTCCTCGCTTCACATAGGGTGTGCCAGAGTGCACTTCATCTGGGCT
GGAGAGATCAGTGCGGCAGCTGGAAAGGCGCATGGTGGTGCCGCATGCCG
CTGCGATGCATGGGAGGAGGGGGAAGAGGAGGGGGAGGAGGAGGAGTGGC
TTTCGGCCAGCGGTGCTGGCGACCTTGGTCTGCCTGCTGATCGCTGGTAG
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Synonyms
The feature 'Ec-00_004530.1' has the following synonyms
Synonym
Esi361_0042
Esi_361_0042