Ec-00_004400.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004400.1
Unique NameEc-00_004400.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length40
Homology
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BLAST of Ec-00_004400.1 vs. uniprot
Match: D7FSJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ8_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.340e-7
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    7 AAFATASTGATPTKNTPSPRKGKGKVRDPH 96
            AAFATASTGATPTKNT SP+ GKGKV  PH
Sbjct:   17 AAFATASTGATPTKNTTSPKNGKGKVHHPH 46
The following BLAST results are available for this feature:
BLAST of Ec-00_004400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSJ8_ECTSI2.340e-783.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5901360..5904035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length120
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_004400.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004400Ec-00_004400Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5901360..5904035 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004400.1.1Ec-00_004400.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5901360..5901365 +
Ec-00_004400.1.2Ec-00_004400.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5902467..5902556 +
Ec-00_004400.1.3Ec-00_004400.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5904012..5904035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004400.1CDS:Ec-00_004400.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5901360..5901365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004400.1Ec-00_004400.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5901360..5904035 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004400.1 ID=Ec-00_004400.1|Name=Ec-00_004400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=40bp
MNAAFATASTGATPTKNTPSPRKGKGKVRDPHVAWRSHV*
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spliced messenger RNA

>Ec-00_004400.1 ID=Ec-00_004400.1|Name=Ec-00_004400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=120bp|location=Sequence derived from alignment at chr_00:5901360..5904035+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCCGCCTTCGCCACCGCCAGCACGGGAGCGACTCCAACCAAGAA
CACACCCTCCCCCAGGAAGGGGAAGGGCAAGGTCCGCGATCCTCATGTGG
CGTGGCGGTCTCACGTATGA
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protein sequence of Ec-00_004400.1

>Ec-00_004400.1 ID=Ec-00_004400.1|Name=Ec-00_004400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=40bp
MNAAFATASTGATPTKNTPSPRKGKGKVRDPHVAWRSHV*
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mRNA from alignment at chr_00:5901360..5904035+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004400.1 ID=Ec-00_004400.1|Name=Ec-00_004400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2676bp|location=Sequence derived from alignment at chr_00:5901360..5904035+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAATGTTTGTCGACTACAGCGTACTGCTGTCTGAAGTGCTGTCTGCAC
AAATATCACCATGGTGTATGGTGCACAACAAGCTCGGGGCATGCAGCTGC
TGTCTGAAGTGCTGTCAGAATGGATCCGTGGACATACAATGAAGAAGAAC
AACCAACCAAAGCCATCATCATTGCACTTGACAATCGCCCGAATGTGTGG
AACCTTCCAATGCATGCACCCCATGCCATTCGACTCTATCCTCTAATGTG
AACCGCGCTGAACCACCACCGGTCGAGACGACCCGCACTTTATGAACCGT
ATTTTTCACACTCCAACAGATCGATCCCACAACCTACCTGCTGTAATGTA
GAGCCAGTTTTTCAACGTCATGACGCACGTGACTTCGAGGTAAGAGGTAA
ATTATTTCCCTTTTCGCGTTCCATCCTTCCCAAAGATCCACTTACTTTCC
TTTGGTCATGACATTTAGCTCCAGTCTCCACATATCCACACCACCAACCT
CCCTTTCCCGTATCTTCCTCGAATGTTCAAAGAATAGTCCACAATTTTTT
GTCGGGATTCTTACCTCTTCATATCTGGTGGGCTGGTGCATATTTTGAAA
TCCGTCGACTCCTGCCTCCGTTCCCCCCGACCCACCTCCCCACAACAACA
CAACGACATTCTTCCCGACGTCCCTCCCACAAGTCTCCCCGACACCCGTC
CACGACATCGACATGGCTCCTACGACGCGAGGCAAGCGCACTCCCAGCGC
CAATGCAAAAGTACTCTCGCCGTTTCCTCTCAACGTTTTTACACAATACC
GGCGCCCGCCGAACCATATGTGCGGCTTGCCTTCGCACGACCACGTAGAC
GCCCATGATCGCGCCTTCCCCCAGGACACGGCACAAACACGACTCATACG
TTGACCACGTCCATACCTTCTACACCCACCTTCCCTCGCCTCTTCTTGCG
AAGCGGTCACCGCTAATCGATTTTGTGAAAACCTCTTCCAACGAAAGTGT
CTACTTCGCACCCCTACTCAAGAACACCCGTCAACGTTTTCTCACCCTGC
CTCCGTCCCTTCTTCCCTTCTTCGTTCACGCCTCGACGTCCCGTTACACT
TTCATAGGCCGCCTTCGCCACCGCCAGCACGGGAGCGACTCCAACCAAGA
ACACACCCTCCCCCAGGAAGGGGAAGGGCAAGGTCCGCGATCCTCATGTG
AGTACGTTCAGCACGTAGATACCGTCCAAAAAGCAACTTACGGCGTTCCG
CAAGATTTTGTTTTTTTCCAAATCTTTCCTTTGTCGCGCGCATGCGTGTG
TAGTCCTCCGTTTTTCCAGCAGCCTCAACCTTGCCCATGGCGCGTCCGCG
AACCTCGACCACCATGACATTTCTCGGCCCCCGTCTCCAACTGAACATTG
CTAGCTCTAATCGATCTGCTCGTCCTGTGCTTCCCATGCGACAACAACAG
CGAACCTCGAACGGGTATGATGTTCTATGACTCGGTCGCATTCTTCATCC
CTGACTCCGGAGATACTGCCATGTGCACCATCGCCCCGTCATCCCGACAA
CAAAACACATGAACGACGTGCGTGCCATGCCTACAAATCCAACCATCATC
CAACTTTTTACTACTCCTCATGCCAGCAGCTTCCGGCGTTCACCACCGCA
TGGTACCATGAAAACACCGTGCGCACGCCACCTGCCCTACGTCGTCTTGG
GCGATCAGTACCGATGTACGCATGTCGCGCCTGCAGGGATCAGGTGTACG
TGTGTTCCCCAAATACCACACCTGTCGCCCGACATCCATTTCCAAAACGT
GTTAACCTTTCTGACCGTCGAACGTCGGAATCTACCATTGCTGCAAGAAG
CTCTATGACCGACCGCGCACATGTATTCGTAGGATGAAGTGTGTACCAGC
ATCCTGTCGTGGTGTTCACAAGATCAACATGGACCTCTATCGGTTCAAAA
ACCCTTCACAACTTCTCAACTTCAACAATCGTCAGCCAGCTGCTCCGAAT
ATCTTTGTAGAGTCGAAAACGTACAATAATCTATATTACATTCGTAATAC
CGCTACAATACCATTCATTATTGAACTCAGGCCAGGTAAAAGACAATAAT
AGCTGCTGATCGGTATTGGTGACGTGGTTGGGACTTTCCGTATTCCTTAT
GGGCACAGAACCTGCTATACCTGCACCGCACACCTCGACGATCGGATACA
TAATGTTGAAAGATCCACTCTGTCTACGGTACACGGAACGAATCATACAT
CCGTGATCTCGGAGATTCAAGTCAGATATTCGAACACGTGCGCGAAGTGT
GTGTGTCATCGCACCTCTTAGGGATGGTGAATACAGCGGTAATCCTCGGG
CACACATTGGCATGAGACGGCCGTTCTGCTCGTTCTGTGTGCCAAACGCG
TTTCTCCTCGTTGACTCTCTGTTGATGGTATGGGAAACAGGTGACGGCGT
AGGTCAAAGTACATGTGAATGCGGAAGATTTGTGATGTATGTGTATCGCG
GATCTGTAGATGATACATGGGGAAATTGAAGGGGGAGAGTCGGTGGTCGA
GACAGAGGGGTGATGCAATCGACATTCCGTGTGTGTGTATGGAAGCATGC
TTGCAATCGTAATCCGGCGCCTGATGTTGTATTTCGCGTTTGCTGAATGC
AGGTGGCGTGGCGGTCTCACGTATGA
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Coding sequence (CDS) from alignment at chr_00:5901360..5904035+

>Ec-00_004400.1 ID=Ec-00_004400.1|Name=Ec-00_004400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=120bp|location=Sequence derived from alignment at chr_00:5901360..5904035+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAATGCCGCCTTCGCCACCGCCAGCACGGGAGCGACTCCAACCAAGAA
CACACCCTCCCCCAGGAAGGGGAAGGGCAAGGTCCGCGATCCTCATGTGG
CGTGGCGGTCTCACGTATGA
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Synonyms
The feature 'Ec-00_004400.1' has the following synonyms
Synonym
Esi0352_0021
Esi_0352_0021