Ec-00_004370.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004370.1
Unique NameEc-00_004370.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length175
Homology
[Close]
BLAST of Ec-00_004370.1 vs. uniprot
Match: D7G025_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G025_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 4.780e-130
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 1 
Query:    1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPGVRPVKRRMMLFNAWCT 522
            MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSP V+PVKRRMMLFNAWCT
Sbjct:    1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWCT 174
[Close]
BLAST of Ec-00_004370.1 vs. uniprot
Match: A0A6H5JXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU8_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 2.530e-103
Identity = 141/174 (81.03%), Postives = 154/174 (88.51%), Query Frame = 1 
Query:    1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPGVRPVKRRMMLFNAWC 519
            MSSWYTP+RY DWPGSSPPERNT +R+ LLWQHVFL GLGMKTHVHVAVV+AGLRGCD T MMDVVFGT KK G PLPIL+RW+FCPT  TPG+V++P+LAVWHETAPCFL GV+TTVTKIAI GRIPLEWAWPNPR   LPTARRP  HLQWAIK PGV+PVKRR+MLFNA C
Sbjct:    1 MSSWYTPDRYGDWPGSSPPERNTDLRDLLLWQHVFLAGLGMKTHVHVAVVEAGLRGCDETCMMDVVFGTPKKEGDPLPILLRWEFCPTQNTPGVVSEPTLAVWHETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACC 174
[Close]
BLAST of Ec-00_004370.1 vs. uniprot
Match: A0A6H5L242_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L242_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.540e-75
Identity = 121/176 (68.75%), Postives = 133/176 (75.57%), Query Frame = 1 
Query:    1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLE---WAWPNPRTLTLPTARRPRTHLQWAIKSPGVRPVKRRMMLFNAWC 519
            MSSWYTPERYAD PGSS  E NTA+REALLWQHVFLGGLG                C TTFM+D+VFGTAKKG+PLPIL+RWDFCPTLI PGLVAKPSLAVWHETAPCFL G+V+TVTKIAIHGR PL+    A P+    T  T   P  +LQ AIK PGV+PVKRR+MLFNA C
Sbjct:    1 MSSWYTPERYADGPGSSSSEYNTAIREALLWQHVFLGGLG----------------CGTTFMVDIVFGTAKKGEPLPILLRWDFCPTLIAPGLVAKPSLAVWHETAPCFLDGIVSTVTKIAIHGRNPLDRVGLAKPSGGATTHSTTAPP--NLQCAIKLPGVQPVKRRIMLFNACC 158
[Close]
BLAST of Ec-00_004370.1 vs. uniprot
Match: A0A6H5KM83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM83_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.610e-62
Identity = 95/113 (84.07%), Postives = 100/113 (88.50%), Query Frame = 1 
Query:  184 MMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPGVRPVKRRMMLFNAWC 519
            MMDVVFGT KK G PLPILMRW+ CPTLITPGLVAKPSLAVWHETAPCFL GVVTTVTKIAIHGRIPLEWAWPNPR   LPTARRP  HLQWAIK PGV+PV+R ++LFNA C
Sbjct:    1 MMDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVERGIILFNACC 113
[Close]
BLAST of Ec-00_004370.1 vs. uniprot
Match: D7FPI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.140e-22
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:    2 CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV 121
            CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV
Sbjct:   46 CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV 85
The following BLAST results are available for this feature:
BLAST of Ec-00_004370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G025_ECTSI4.780e-13098.85Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JXU8_9PHAE2.530e-10381.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L242_9PHAE1.540e-7568.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM83_9PHAE1.610e-6284.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI1_ECTSI3.140e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5846164..5847171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length525
Hectar predicted targeting categoryother localisation
Gene idEc-00_004370.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004370Ec-00_004370Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5846164..5847171 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004370.1.1Ec-00_004370.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5846164..5846680 +
Ec-00_004370.1.2Ec-00_004370.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5847164..5847171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004370.1CDS:Ec-00_004370.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5846164..5846680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004370.1Ec-00_004370.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5846164..5847171 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004370.1 ID=Ec-00_004370.1|Name=Ec-00_004370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=175bp
MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVV
QAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLA
VWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHL
QWAIKSPGVRPVKRRMMLFNAWCT*
back to top

spliced messenger RNA

>Ec-00_004370.1 ID=Ec-00_004370.1|Name=Ec-00_004370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=525bp|location=Sequence derived from alignment at chr_00:5846164..5847171+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTTGGTACACTCCGGAAAGGTATGCTGACTGGCCGGGATCCTC
GCCTCCCGAGCGCAATACAGCTATGCGGGAAGCACTTCTTTGGCAGCACG
TATTTTTGGGGGGATTGGGTATGAAAACCCATGTACATGTTGCGGTGGTG
CAAGCTGGGCTGAGAGGTTGCGACACAACGTTCATGATGGACGTAGTGTT
TGGTACTGCCAAGAAGGGGAAGCCATTGCCGATCCTGATGCGGTGGGACT
TTTGCCCGACGCTGATCACTCCGGGTTTGGTTGCGAAGCCTTCGCTTGCA
GTCTGGCATGAAACAGCACCTTGCTTCCTCACCGGTGTCGTGACGACGGT
GACTAAAATCGCCATACACGGACGTATCCCTCTCGAGTGGGCCTGGCCAA
ACCCTCGGACCCTAACCCTACCTACGGCACGACGGCCCCGGACTCATCTA
CAATGGGCAATCAAGTCGCCTGGGGTACGGCCAGTCAAGCGTCGAATGAT
GCTGTTCAACGCATGGTGTACTTGA
back to top

protein sequence of Ec-00_004370.1

>Ec-00_004370.1 ID=Ec-00_004370.1|Name=Ec-00_004370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=175bp
MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVV
QAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLA
VWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHL
QWAIKSPGVRPVKRRMMLFNAWCT*
back to top

mRNA from alignment at chr_00:5846164..5847171+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004370.1 ID=Ec-00_004370.1|Name=Ec-00_004370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1008bp|location=Sequence derived from alignment at chr_00:5846164..5847171+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTTCTTGGTACACTCCGGAAAGGTATGCTGACTGGCCGGGATCCTC
GCCTCCCGAGCGCAATACAGCTATGCGGGAAGCACTTCTTTGGCAGCACG
TATTTTTGGGGGGATTGGGTATGAAAACCCATGTACATGTTGCGGTGGTG
CAAGCTGGGCTGAGAGGTTGCGACACAACGTTCATGATGGACGTAGTGTT
TGGTACTGCCAAGAAGGGGAAGCCATTGCCGATCCTGATGCGGTGGGACT
TTTGCCCGACGCTGATCACTCCGGGTTTGGTTGCGAAGCCTTCGCTTGCA
GTCTGGCATGAAACAGCACCTTGCTTCCTCACCGGTGTCGTGACGACGGT
GACTAAAATCGCCATACACGGACGTATCCCTCTCGAGTGGGCCTGGCCAA
ACCCTCGGACCCTAACCCTACCTACGGCACGACGGCCCCGGACTCATCTA
CAATGGGCAATCAAGTCGCCTGGGGTACGGCCAGTCAAGCGTCGAATGAT
GCTGTTCAACGCATGGTGCAGGTTAGAATTTTGCAGGGCATGGGTGACGA
CGTGTTTGAGCGTTCAGTTAGGAACTTTCCCGGTTCGCGTGACTACACCA
AGATTTTAACTCACTTACGAGGAGGCAGAAAGCTAACTGTAAGAATAGGT
TCATTATATTTGGATGGCACAGAGGTGCCAAGGTGCCGATCCTTGCGAAG
TTGCCAGTTCCTGTGCGTAAAGGTTAAAATATATTCTGGGCCTAATTAAA
AACGCACTCGCCGTGCAAAGACTCCGGTCCGTGTGTGTCTGAACAATAAA
ATTTATACGCGGATGCCGTTGTTGTTGTTGTTGTTGTGGTTGTGGTTGTG
GTTGTGGTTGTGGTTGTGGTCGTTAGGGTTGTTTTTGTCTTCTCAATAGA
AGAGACCGTTCCGGTATTGCACAGCGGGGGCTGCCGGTGGACGCTTGATA
CTCATCCCTCTCTCCCTCTCCCGCGCCACTGCAATTGTCACTTCCTGTAG
GTACTTGA
back to top

Coding sequence (CDS) from alignment at chr_00:5846164..5847171+

>Ec-00_004370.1 ID=Ec-00_004370.1|Name=Ec-00_004370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=525bp|location=Sequence derived from alignment at chr_00:5846164..5847171+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTTCTTGGTACACTCCGGAAAGGTATGCTGACTGGCCGGGATCCTC
GCCTCCCGAGCGCAATACAGCTATGCGGGAAGCACTTCTTTGGCAGCACG
TATTTTTGGGGGGATTGGGTATGAAAACCCATGTACATGTTGCGGTGGTG
CAAGCTGGGCTGAGAGGTTGCGACACAACGTTCATGATGGACGTAGTGTT
TGGTACTGCCAAGAAGGGGAAGCCATTGCCGATCCTGATGCGGTGGGACT
TTTGCCCGACGCTGATCACTCCGGGTTTGGTTGCGAAGCCTTCGCTTGCA
GTCTGGCATGAAACAGCACCTTGCTTCCTCACCGGTGTCGTGACGACGGT
GACTAAAATCGCCATACACGGACGTATCCCTCTCGAGTGGGCCTGGCCAA
ACCCTCGGACCCTAACCCTACCTACGGCACGACGGCCCCGGACTCATCTA
CAATGGGCAATCAAGTCGCCTGGGGTACGGCCAGTCAAGCGTCGAATGAT
GCTGTTCAACGCATGGTGTACTTGA
back to top
Synonyms
The feature 'Ec-00_004370.1' has the following synonyms
Synonym
Esi0352_0007
Esi_0352_0007