Ec-00_004360.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004360.1
Unique NameEc-00_004360.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length57
Homology
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BLAST of Ec-00_004360.1 vs. uniprot
Match: D7FZ24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ24_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.380e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MRARASGRERSAEKYTSVLLHTQQLSPPVGHERSRRQGGGHRQGRRRVDRWSRCGQ 168
            MRARASGRERSAEKYTSVLLHTQQLSPPVGHERSRRQGGGHRQGRRRVDRWSRCGQ
Sbjct:    1 MRARASGRERSAEKYTSVLLHTQQLSPPVGHERSRRQGGGHRQGRRRVDRWSRCGQ 56
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BLAST of Ec-00_004360.1 vs. uniprot
Match: A0A6H5K6G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 6.750e-9
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   64 TQQLSPPVGHERSRRQGGGHRQGRRRVDRWSRCGQ 168
            TQQLSPP+GHE   RQ  GHRQG RRV+ WSRCGQ
Sbjct:   17 TQQLSPPIGHEGCPRQDAGHRQGHRRVNAWSRCGQ 51
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BLAST of Ec-00_004360.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.890e-6
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   67 QQLSPPVGHERSRRQGGGHRQGRRRVDRWSRCG 165
            QQ SPP+GH+ S R+ GGHRQGRR+VD WS+CG
Sbjct:    2 QQQSPPIGHQGSPRERGGHRQGRRKVDGWSQCG 34
The following BLAST results are available for this feature:
BLAST of Ec-00_004360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZ24_ECTSI1.380e-31100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6G6_9PHAE6.750e-974.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE2.890e-669.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5802411..5802581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length171
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_004360.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004360Ec-00_004360Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5802411..5802581 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004360.1.1Ec-00_004360.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5802411..5802581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004360.1CDS:Ec-00_004360.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5802411..5802581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004360.1Ec-00_004360.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5802411..5802581 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004360.1 ID=Ec-00_004360.1|Name=Ec-00_004360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=57bp
MRARASGRERSAEKYTSVLLHTQQLSPPVGHERSRRQGGGHRQGRRRVDR
WSRCGQ*
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spliced messenger RNA

>Ec-00_004360.1 ID=Ec-00_004360.1|Name=Ec-00_004360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=171bp|location=Sequence derived from alignment at chr_00:5802411..5802581- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGCGAGAGCGAGCGGGAGAGAGAGAAGTGCAGAGAAATACACCAG
TGTACTTCTGCACACGCAACAGCTATCTCCACCTGTAGGCCATGAGAGAA
GCCGGCGACAGGGTGGTGGCCACAGACAGGGTCGTAGAAGGGTTGATAGG
TGGTCGCGCTGTGGTCAGTAG
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protein sequence of Ec-00_004360.1

>Ec-00_004360.1 ID=Ec-00_004360.1|Name=Ec-00_004360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=57bp
MRARASGRERSAEKYTSVLLHTQQLSPPVGHERSRRQGGGHRQGRRRVDR
WSRCGQ*
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mRNA from alignment at chr_00:5802411..5802581-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004360.1 ID=Ec-00_004360.1|Name=Ec-00_004360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=171bp|location=Sequence derived from alignment at chr_00:5802411..5802581- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGAGCGAGAGCGAGCGGGAGAGAGAGAAGTGCAGAGAAATACACCAG
TGTACTTCTGCACACGCAACAGCTATCTCCACCTGTAGGCCATGAGAGAA
GCCGGCGACAGGGTGGTGGCCACAGACAGGGTCGTAGAAGGGTTGATAGG
TGGTCGCGCTGTGGTCAGTAG
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Coding sequence (CDS) from alignment at chr_00:5802411..5802581-

>Ec-00_004360.1 ID=Ec-00_004360.1|Name=Ec-00_004360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=171bp|location=Sequence derived from alignment at chr_00:5802411..5802581- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGAGCGAGAGCGAGCGGGAGAGAGAGAAGTGCAGAGAAATACACCAG
TGTACTTCTGCACACGCAACAGCTATCTCCACCTGTAGGCCATGAGAGAA
GCCGGCGACAGGGTGGTGGCCACAGACAGGGTCGTAGAAGGGTTGATAGG
TGGTCGCGCTGTGGTCAGTAG
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Synonyms
The feature 'Ec-00_004360.1' has the following synonyms
Synonym
Esi0352_0002
Esi_0352_0002