Ec-00_004230.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_004230.2
Unique Name	Ec-00_004230.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	171

Homology

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BLAST of Ec-00_004230.2 vs. uniprot
Match: A0A6H5KW40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW40_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 1.810e-96
Identity = 146/166 (87.95%), Postives = 151/166 (90.96%), Query Frame = -1

Query:  478 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNVGGVSSTCRNGAPSRKGRVVNGQMTTASNK 975
            GIG K YLDGPMDYAKKLKLQFRVGDLDLPERRKRY+S       DR TCPCGKSEESRPHIVGECELYRKEREDLEE+MRQRGCDMDKFGKLDNSEKTIA IGDRWWAQEA+EDGDNMCK+FL SLWQKR+EL NVGGVSS  RNGAPSRKGRVVNGQMTTASNK
Sbjct:   30 GIGRKSYLDGPMDYAKKLKLQFRVGDLDLPERRKRYSSXXXXXXXDRQTCPCGKSEESRPHIVGECELYRKEREDLEEDMRQRGCDMDKFGKLDNSEKTIAGIGDRWWAQEAVEDGDNMCKEFLCSLWQKREELPNVGGVSSRGRNGAPSRKGRVVNGQMTTASNK 195

[Close]

BLAST of Ec-00_004230.2 vs. uniprot
Match: A0A6H5K1U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1U0_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 2.700e-92
Identity = 145/166 (87.35%), Postives = 149/166 (89.76%), Query Frame = -1

Query:  478 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNVGGVSSTCRNGAPSRKGRVVNGQMTTASNK 975
            GIGMK YLDGPMDYAKKLKLQFRVGDLDLPERRKRY+S       DR TCPCGKSEESRPHIVGECELYRKEREDLEE+MRQRGCDMDKFGKLDNSEKTIA+ GDRWWAQEA+ED D MCKKFL SLWQKR EL NVGGVSS  RNGAPSRKGRVVNGQMTTASNK
Sbjct:  285 GIGMKSYLDGPMDYAKKLKLQFRVGDLDLPERRKRYSSXXXXXXXDRQTCPCGKSEESRPHIVGECELYRKEREDLEEDMRQRGCDMDKFGKLDNSEKTIAVTGDRWWAQEAVEDRDKMCKKFLCSLWQKRTELPNVGGVSSRGRNGAPSRKGRVVNGQMTTASNK 450

[Close]

BLAST of Ec-00_004230.2 vs. uniprot
Match: A0A6H5KD64_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD64_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 8.580e-90
Identity = 144/166 (86.75%), Postives = 152/166 (91.57%), Query Frame = -1

Query:  478 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNVGGVSSTCRNGAPSRKGRVVNGQMTTASNK 975
            GIGMK YLDGPMDYAK+LKLQFRVGDLDLP+RRKRY+        DR TCPCGKSEESRPHIVGECELYRKEREDLEE+MRQRGCDMDKFGKLDNSEKTIA+IGDRWWAQEA+EDGDNMCK+FL SLWQKRKEL NVGGVSS  RNG+PSRKGRVVNGQMTTASNK
Sbjct:  615 GIGMKSYLDGPMDYAKRLKLQFRVGDLDLPQRRKRYSXXXXXXXXDRQTCPCGKSEESRPHIVGECELYRKEREDLEEDMRQRGCDMDKFGKLDNSEKTIAVIGDRWWAQEAVEDGDNMCKEFLCSLWQKRKELPNVGGVSSRGRNGSPSRKGRVVNGQMTTASNK 780

[Close]

BLAST of Ec-00_004230.2 vs. uniprot
Match: A0A6H5KW01_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW01_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 1.570e-87
Identity = 143/166 (86.14%), Postives = 149/166 (89.76%), Query Frame = -1

Query:  478 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNVGGVSSTCRNGAPSRKGRVVNGQMTTASNK 975
            GIGMK YLDGPMDYAKKLKLQFRVGDLDLPERRKRY+S       DR TCPCGKSEESRPHIVGECELYRKEREDLEE+MRQRG D+DKFGKLDNSE TIA+IG+RWWAQEA+EDGD MCKK L SLWQKRKEL NVGGVSS  RNGAPSRKGRVVNGQMTTASNK
Sbjct:  370 GIGMKSYLDGPMDYAKKLKLQFRVGDLDLPERRKRYSSXXXXXXXDRQTCPCGKSEESRPHIVGECELYRKEREDLEEDMRQRGFDLDKFGKLDNSE-TIAVIGNRWWAQEAVEDGDKMCKKCLCSLWQKRKELPNVGGVSSRGRNGAPSRKGRVVNGQMTTASNK 534

[Close]

BLAST of Ec-00_004230.2 vs. uniprot
Match: A0A6H5KVQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ8_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 3.850e-85
Identity = 141/166 (84.94%), Postives = 150/166 (90.36%), Query Frame = -1

Query:  478 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNVGGVSSTCRNGAPSRKGRVVNGQMTTASNK 975
            GIGMK YLDGPMDYAKKLKLQFRVGDLDLPERRKRY+S       DR +CPCGKSEESRPH VGECELYRKEREDLEE+MRQRGC+MDKFGK+D++EKTIA+IGDRWWAQEA+EDGD MCKKFL SLWQKRKEL NVGGVSS  RNGAPSRKGRVVN QMTTASNK
Sbjct:  863 GIGMKSYLDGPMDYAKKLKLQFRVGDLDLPERRKRYSSXXXXXXXDRQSCPCGKSEESRPHTVGECELYRKEREDLEEDMRQRGCEMDKFGKIDHNEKTIAVIGDRWWAQEAVEDGDKMCKKFLCSLWQKRKELPNVGGVSSRGRNGAPSRKGRVVNVQMTTASNK 1028

[Close]

BLAST of Ec-00_004230.2 vs. uniprot
Match: A0A6H5JGS1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS1_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 4.240e-84
Identity = 143/166 (86.14%), Postives = 147/166 (88.55%), Query Frame = -1

Query:  478 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNVGGVSSTCRNGAPSRKGRVVNGQMTTASNK 975
            GIG K YLDGPMDYAKKLKLQFRVGDLDLPERRKRY+S       DR TCPCGKSEESRPHIVGECELYRKEREDLEE+MRQRGCDMDKFGKLDNSEKTIA+IGDRWWAQEA+EDGD  CKKFL SLWQKRKEL NVGGVS    NGAPSRKGRV NGQMTTASNK
Sbjct: 1762 GIGTKSYLDGPMDYAKKLKLQFRVGDLDLPERRKRYSSXXXXXXXDRQTCPCGKSEESRPHIVGECELYRKEREDLEEDMRQRGCDMDKFGKLDNSEKTIAVIGDRWWAQEAVEDGDKTCKKFLCSLWQKRKELPNVGGVSIRGGNGAPSRKGRVANGQMTTASNK 1927

[Close]

BLAST of Ec-00_004230.2 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 1.880e-80
Identity = 134/137 (97.81%), Postives = 134/137 (97.81%), Query Frame = -1

Query:  565 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNV 975
            GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGD MCKKFLWSLWQKRKEL N 
Sbjct: 1419 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDKMCKKFLWSLWQKRKELPNA 1555

[Close]

BLAST of Ec-00_004230.2 vs. uniprot
Match: A0A6H5L585_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L585_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 5.210e-77
Identity = 126/159 (79.25%), Postives = 132/159 (83.02%), Query Frame = -1

Query:  499 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNVGGVSSTCRNGAPSRKGRVVNGQ 975
            GIGMK YLDGP DYAKK+KLQFRVGDLDLPE RKR+                 KSEESRPHIVGECELYRKEREDLEE+MRQRGCDMDKFGKLD+SEKTI +I DRWWAQEA+EDGD MCKKFL SLWQKRKEL NVGGVSS  RNGAPSRKGRVVNGQ
Sbjct:  172 GIGMKSYLDGPTDYAKKMKLQFRVGDLDLPEPRKRHVH-------------VAKSEESRPHIVGECELYRKEREDLEEDMRQRGCDMDKFGKLDDSEKTITVIEDRWWAQEAVEDGDKMCKKFLCSLWQKRKELPNVGGVSSRGRNGAPSRKGRVVNGQ 317

[Close]

BLAST of Ec-00_004230.2 vs. uniprot
Match: A0A6H5KRD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD6_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 4.090e-75
Identity = 127/166 (76.51%), Postives = 132/166 (79.52%), Query Frame = -1

Query:  478 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNVGGVSSTCRNGAPSRKGRVVNGQMTTASNK 975
            GIGMK YLDG MD AKKLKLQFR GDLDLPERRKR                        PHIVGECELYRKEREDLEE+MRQRGCDMDKFGKLDNSEKTIA+IGDRWWAQEA+EDGD MCK+FL SLWQKRKEL NVGGVSS+ RNGAPS KGRVVNGQMT ASNK
Sbjct:  230 GIGMKSYLDGAMDDAKKLKLQFRAGDLDLPERRKR------------------------PHIVGECELYRKEREDLEEDMRQRGCDMDKFGKLDNSEKTIAVIGDRWWAQEAVEDGDKMCKEFLCSLWQKRKELPNVGGVSSSGRNGAPSPKGRVVNGQMTKASNK 371

[Close]

BLAST of Ec-00_004230.2 vs. uniprot
Match: A0A6H5L2T7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T7_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.120e-73
Identity = 117/141 (82.98%), Postives = 124/141 (87.94%), Query Frame = -1

Query:  553 GIGMKKYLDGPMDYAKKLKLQFRVGDLDLPERRKRYTSRRREEEEDRHTCPCGKSEESRPHIVGECELYRKEREDLEEEMRQRGCDMDKFGKLDNSEKTIAIIGDRWWAQEALEDGDNMCKKFLWSLWQKRKELLNVGGVS 975
            GI MK YLDGPMDYAKKLKLQFRVGDLDLPERRKRY+S       DR TCP GKSE+SRPHIVGE ELYRKEREDLEE+MRQ GCDMDKFGKLDNSEKTIA+IGDRWWAQ+A+ED D MCKKFL SLWQ+RKEL NVGGVS
Sbjct:   36 GIRMKSYLDGPMDYAKKLKLQFRVGDLDLPERRKRYSSXXXXXXXDRQTCPFGKSEKSRPHIVGEGELYRKEREDLEEDMRQIGCDMDKFGKLDNSEKTIAVIGDRWWAQKAVEDWDKMCKKFLCSLWQERKELPNVGGVS 176

The following BLAST results are available for this feature:

BLAST of Ec-00_004230.2 vs. uniprot

BLAST of Ec-00_004230.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KW40_9PHAE	1.810e-96	87.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1U0_9PHAE	2.700e-92	87.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KD64_9PHAE	8.580e-90	86.75	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KW01_9PHAE	1.570e-87	86.14	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KVQ8_9PHAE	3.850e-85	84.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JGS1_9PHAE	4.240e-84	86.14	Reverse transcriptase domain-containing protein n=...	[more]
D7G873_ECTSI	1.880e-80	97.81	Chromodomain-helicase-DNA-binding protein 8 n=2 Ta...	[more]
A0A6H5L585_9PHAE	5.210e-77	79.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KRD6_9PHAE	4.090e-75	76.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2T7_9PHAE	2.120e-73	82.98	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:5628852..5630043 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	977
Hectar predicted targeting category	other localisation
Gene id	Ec-00_004230.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_004230	Ec-00_004230	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 5628852..5630043 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004230.2.2	Ec-00_004230.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5628852..5629655 -
Ec-00_004230.2.1	Ec-00_004230.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5629871..5630043 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004230	3UTR:Ec-00_004230.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 5628852..5629254 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004230.2	CDS:Ec-00_004230.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 5629255..5629655 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004230	5UTR:Ec-00_004230.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 5629983..5630043 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004230.2	Ec-00_004230.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 5629255..5629982 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:5628852..5630043-
coding sequence from alignment at chr_00:5628852..5630043-

mRNA sequence

>Ec-00_004230.2 ID=Ec-00_004230.2|Name=Ec-00_004230.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=171bp
MARTGFKTLGAQGSPTDILFGQQGRRGRRSMRMPMRQGRPSGMPRRAVKG
SSSLWTKLPPGEEQEDLEDGGRTPRLPRHRSADSYGWLSSPAKLLAFFAA
GSVCSAPGVFNGALSPFLFSIAVFANIPPGGRRGGGGYSFVACRSHLTID
HASLSRRSTVPTRTRDTTNI*

spliced messenger RNA

>Ec-00_004230.2 ID=Ec-00_004230.2|Name=Ec-00_004230.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=977bp|location=Sequence derived from alignment at chr_00:5628852..5630043- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGGGACGTCGCGAGAATGGGTGGGGACGGAAAGCATGCGTAAAAG
GGCCCCAATAGATGGCGAGAACAGGCTTCAAGACCTTAGGGGCGCAAGGC
TCGCCGACGGACATACTATTCGGGCAGCAGGGTCGAAGAGGAAGAAGAAG
CATGCGTATGCCCATGCGGCAAGGCAGGCCTAGCGGCATGCCGCGCCGTG
CGGTGAAAGGCAGCTCCTCCTTATGGACGAAGCTCCCCCCGGGGGAGGAA
CAGGAGGACTTGGAAGATGGAGGACGAACGCCACGCCTGCCGAGACACCG
CTCGGCAGATAGTTATGGCTGGTTATCTTCACCTGCAAAGCTGCTCGCCT
TTTTTGCCGCTGGCAGCGTTTGTAGTGCACCTGGTGTATTTAATGGAGCA
CTCTCACCTTTTTTGTTTTCGATAGCTGTGTTTGCGAACATTCCGCCGGG
GGGACGGAGAGGGGGGGGGGGGTACTCATTTGTTGCTTGCCGTAGTCATT
TGACCATTGACCACGCGTCCCTTTCGAGACGGAGCACCGTTCCTACACGT
ACTAGAGACACCACCAACATTTAGGAGCTCTTTACGTTTCTGCCACAAAC
TCCATAAAAATTTCTTGCACATGTTATCCCCGTCCTCTAGGGCCTCTTGT
GCCCACCATCTATCCCCAATTATCGCGATCGTTTTTTCGCTGTTGTCTAA
TTTACCAAACTTGTCCATGTCACACCCTCTCTGTCTCATTTCCTCCTCGA
GATCCTCTCTTTCCTTCCTGTACAACTCACACTCCCCAACTATGTGGGGT
CTACTCTCCTCCGATTTGCCACATGGACAAGTGTGTCTATCCTCCTCTTC
CTCTCTCCTACGGCTGGTATACCTCTTCCTCCGTTCTGGCAAGTCCAGAT
CGCCTACTCGAAATTGCAATTTCAGCTTTTTCGCATAGTCCATGGGGCCG
TCCAAATACTTCTTCATCCCTATCCCT

protein sequence of Ec-00_004230.2

>Ec-00_004230.2 ID=Ec-00_004230.2|Name=Ec-00_004230.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=171bp
MARTGFKTLGAQGSPTDILFGQQGRRGRRSMRMPMRQGRPSGMPRRAVKG
SSSLWTKLPPGEEQEDLEDGGRTPRLPRHRSADSYGWLSSPAKLLAFFAA
GSVCSAPGVFNGALSPFLFSIAVFANIPPGGRRGGGGYSFVACRSHLTID
HASLSRRSTVPTRTRDTTNI*

mRNA from alignment at chr_00:5628852..5630043-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_004230.2 ID=Ec-00_004230.2|Name=Ec-00_004230.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1192bp|location=Sequence derived from alignment at chr_00:5628852..5630043- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTACGGGACGTCGCGAGAATGGGTGGGGACGGAAAGCATGCGTAAAAG
GGCCCCAATAGATGGCGAGAACAGGCTTCAAGACCTTAGGGGCGCAAGGC
TCGCCGACGGACATACTATTCGGGCAGCAGGGTCGAAGAGGAAGAAGAAG
CATGCGTATGCCCATGCGGCAAGGTCGGAAAGAATACAACTCGTCTTTGG
CATATCAAGGCTGAAACGGAGAGGGGGAATGGAACTCGTGTAGCGGAAAA
GCACTTTAACTGTTTTTGTCTCTACTGGTTGTCTACCAGAAAAGCGTCTC
CCGCGGCGTGAGCCCAACAATCGGACCGGGTCCCCCGCCACTCCTGTTTT
ACGGAAACGCTTTTCGCGCTGTTGCGCTGGGCACGCAGGCAGGCCTAGCG
GCATGCCGCGCCGTGCGGTGAAAGGCAGCTCCTCCTTATGGACGAAGCTC
CCCCCGGGGGAGGAACAGGAGGACTTGGAAGATGGAGGACGAACGCCACG
CCTGCCGAGACACCGCTCGGCAGATAGTTATGGCTGGTTATCTTCACCTG
CAAAGCTGCTCGCCTTTTTTGCCGCTGGCAGCGTTTGTAGTGCACCTGGT
GTATTTAATGGAGCACTCTCACCTTTTTTGTTTTCGATAGCTGTGTTTGC
GAACATTCCGCCGGGGGGACGGAGAGGGGGGGGGGGGTACTCATTTGTTG
CTTGCCGTAGTCATTTGACCATTGACCACGCGTCCCTTTCGAGACGGAGC
ACCGTTCCTACACGTACTAGAGACACCACCAACATTTAGGAGCTCTTTAC
GTTTCTGCCACAAACTCCATAAAAATTTCTTGCACATGTTATCCCCGTCC
TCTAGGGCCTCTTGTGCCCACCATCTATCCCCAATTATCGCGATCGTTTT
TTCGCTGTTGTCTAATTTACCAAACTTGTCCATGTCACACCCTCTCTGTC
TCATTTCCTCCTCGAGATCCTCTCTTTCCTTCCTGTACAACTCACACTCC
CCAACTATGTGGGGTCTACTCTCCTCCGATTTGCCACATGGACAAGTGTG
TCTATCCTCCTCTTCCTCTCTCCTACGGCTGGTATACCTCTTCCTCCGTT
CTGGCAAGTCCAGATCGCCTACTCGAAATTGCAATTTCAGCTTTTTCGCA
TAGTCCATGGGGCCGTCCAAATACTTCTTCATCCCTATCCCT

Coding sequence (CDS) from alignment at chr_00:5628852..5630043-

>Ec-00_004230.2 ID=Ec-00_004230.2|Name=Ec-00_004230.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=513bp|location=Sequence derived from alignment at chr_00:5628852..5630043- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGAGAACAGGCTTCAAGACCTTAGGGGCGCAAGGCTCGCCGACGGA
CATACTATTCGGGCAGCAGGGTCGAAGAGGAAGAAGAAGCATGCGTATGC
CCATGCGGCAAGGCAGGCCTAGCGGCATGCCGCGCCGTGCGGTGAAAGGC
AGCTCCTCCTTATGGACGAAGCTCCCCCCGGGGGAGGAACAGGAGGACTT
GGAAGATGGAGGACGAACGCCACGCCTGCCGAGACACCGCTCGGCAGATA
GTTATGGCTGGTTATCTTCACCTGCAAAGCTGCTCGCCTTTTTTGCCGCT
GGCAGCGTTTGTAGTGCACCTGGTGTATTTAATGGAGCACTCTCACCTTT
TTTGTTTTCGATAGCTGTGTTTGCGAACATTCCGCCGGGGGGACGGAGAG
GGGGGGGGGGGTACTCATTTGTTGCTTGCCGTAGTCATTTGACCATTGAC
CACGCGTCCCTTTCGAGACGGAGCACCGTTCCTACACGTACTAGAGACAC
CACCAACATTTAG

Synonyms

The feature 'Ec-00_004230.2' has the following synonyms


Synonym
Esi344_0043
Esi_344_0043