Ec-00_004150.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004150.2
Unique NameEc-00_004150.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length111
Homology
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BLAST of Ec-00_004150.2 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 7.840e-17
Identity = 53/121 (43.80%), Postives = 58/121 (47.93%), Query Frame = 1 
Query:  418 PELVADTHLDAATDAFVKAYVEERVRPDWVVTSPPTSTPSPF*SRRCGSGVWE*PSS*G*LFWSPPKPEGDG*RKINAPDRVVMLPRATYPGRGCSSTEAWFIWETGRVGEEGRKPAICFS 780
            P L ADTHLDA ++ F   +  E  RPDW+VTSPP         R  G             F  P K  G    K N P  VV+LPRATY GR CSSTEAWFIW     G E    A  F 
Sbjct:   57 PRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKW-LKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQAFFFD 176
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BLAST of Ec-00_004150.2 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.670e-8
Identity = 28/46 (60.87%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:  598 LFWSPPKPEGDG*RKINAPDRVVMLPRATYPGRGCSSTEAWFIWET 735
             F  P K  G    K N PDR+VMLPRATY  R CSSTE WF+WET
Sbjct:   10 TFLGPAKSRGRW-LKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
[Close]
BLAST of Ec-00_004150.2 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 7.840e-6
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = -1 
Query:  522 PSPSGFGGLQKSQPQLEGYSHTPDPHRLLQNGEGVLV 632
            P PSGFGGL+KSQPQLE + HTP+P    QN EGVLV
Sbjct:  172 PLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLV 208
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BLAST of Ec-00_004150.2 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.190e-5
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = -2 
Query:  515 SHRPLVLVGSRKVNLSLKATPIRPTRIACFKMAKACLWVG 634
            SH PLVLVGSRKV+LSL ATP RP   A FK+AKACL+ G
Sbjct:  172 SHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGG 211
The following BLAST results are available for this feature:
BLAST of Ec-00_004150.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE7.840e-1743.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE4.670e-860.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Q9_9PHAE7.840e-670.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE1.190e-572.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5324453..5326168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1493
Hectar predicted targeting categorysignal anchor
Gene idEc-00_004150.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004150Ec-00_004150Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5324453..5327409 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004150.2.2Ec-00_004150.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5324453..5325522 -
Ec-00_004150.2.1Ec-00_004150.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5325746..5326168 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0041503UTR:Ec-00_004150.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 5324453..5324644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004150.2CDS:Ec-00_004150.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5324645..5324977 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0041505UTR:Ec-00_004150.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 5324978..5325522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004150.2Ec-00_004150.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5324645..5324977 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004150.2 ID=Ec-00_004150.2|Name=Ec-00_004150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=111bp
MMSRRDARRLKLCCAGEQRHSRTPRCSLCACVHTMARPKLSAIRLRLAVD
KVEVPLGLQRKISSTLFDCAFPKIQVTSVILGHFVLCHLAVVVVASAAKK
TATTPAPLKK*
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spliced messenger RNA

>Ec-00_004150.2 ID=Ec-00_004150.2|Name=Ec-00_004150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1493bp|location=Sequence derived from alignment at chr_00:5324453..5326168- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GAGGTTTTCTCCGTGTTGTGAGAAGAGCCTCAACCGCCCCCCCGAAGACA
TCGGAAGAAGAATATGTACTGCTGTAGAGCGCCGCTCGTTTTTTTTTCCG
CTGCCCGCACACTCCCTCGGCCACATTGCACCTACCACCCGAAGACATCG
GAAGAAGTATATGTACTGCTGTAGAGCGCCGCTCATTTTTTTTTCCGCTG
CCCGCACACTCTCTCTGCCAGATAGCACCTACCATCTACAGTAGTAAGAA
TAACAGATGAAGTTACCACCACGTTGCATTCACGATTTTCAGGTTCGAGC
CCTTCTGGAACATGTGGAACTGGAAGGCAGGGTAGTCGATTCTTGTGGTG
CCGCCCAAGACGCAGTCTCCACCGTCCTGAGTTCACACGGTCTCCGTGTT
GCAACAAACGACATGAACCCGACATTGGTCGCAGATACGCACCTGGACGC
CGCCACAGACGCGTTTGTCAAGGCGTACGTCGAGGAAAGGGTGCGTCCGG
ACTGGGTCGTGACGAGCCCACCCACAAGCACGCCTTCGCCATTTTGAAGC
AGGCGATGCGGGTCGGGCGTATGGGAGTAGCCTTCAAGCTGAGGTTGACT
TTTCTGGAGCCCACCAAAACCAGAGGGCGATGGCTAAAGGAAAATAAATG
CGCCTGACAGGGTTGTGATGCTTCCCCGCGCTACGTACCCCGGAAGAGGA
TGTAGCTCTACTGAGGCGTGGTTTATATGGGAGACAGGGCGGGTTGGCGA
AGAAGGCCGCAAGCCTGCGATTTGCTTTTCCTTGCCTGACGGTGCTCTCT
GGAATTGTAGGTGCGCTTGTGTCAAAGTTGCATAGCAATAGCCCAAATGT
AAGCGAGTGTCAGAAGTATATGCTCTTGAACCTGAATGGAAATGTCTCCG
TGTTTGCCTCCCATGGCCACTACCAGCGATACCCCTGTCCGTGCTGACGT
CTTGCTTGGTGGTCCGTGATGATGTCTCGGAGAGACGCCCGACGTTTGAA
ATTATGTTGTGCTGGAGAACAACGGCACAGCAGGACACCCCGTTGTTCCT
TGTGTGCCTGCGTGCACACGATGGCCAGACCTAAGCTGAGCGCGATACGT
TTGCGACTGGCGGTCGACAAAGTAGAAGTTCCTCTTGGTTTGCAACGCAA
AATATCATCTACGTTGTTCGATTGTGCATTCCCCAAAATTCAGGTTACTA
GTGTAATCTTGGGCCACTTTGTATTGTGCCATCTTGCAGTCGTTGTCGTC
GCCAGTGCTGCCAAAAAAACAGCAACAACTCCCGCCCCGCTAAAAAAATG
ACATACACCTGTCCATGACCTAGTCCATCAACCCAACACCAATGAAACAC
ACACACCACACACGCCGCACATGGTTTGTGTGAAGGTGCAGGCGTACAAG
GCCGAAACAATTCGTGGTAACTTGTACCAGTAGAACAGCCAAACGCGGCT
CCACCCCGTTAAGAAAGCCCTCCCTGGGTCACGAAGTGGACTC
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protein sequence of Ec-00_004150.2

>Ec-00_004150.2 ID=Ec-00_004150.2|Name=Ec-00_004150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=111bp
MMSRRDARRLKLCCAGEQRHSRTPRCSLCACVHTMARPKLSAIRLRLAVD
KVEVPLGLQRKISSTLFDCAFPKIQVTSVILGHFVLCHLAVVVVASAAKK
TATTPAPLKK*
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mRNA from alignment at chr_00:5324453..5326168-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004150.2 ID=Ec-00_004150.2|Name=Ec-00_004150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1716bp|location=Sequence derived from alignment at chr_00:5324453..5326168- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GAGGTTTTCTCCGTGTTGTGAGAAGAGCCTCAACCGCCCCCCCGAAGACA
TCGGAAGAAGAATATGTACTGCTGTAGAGCGCCGCTCGTTTTTTTTTCCG
CTGCCCGCACACTCCCTCGGCCACATTGCACCTACCACCCGAAGACATCG
GAAGAAGTATATGTACTGCTGTAGAGCGCCGCTCATTTTTTTTTCCGCTG
CCCGCACACTCTCTCTGCCAGATAGCACCTACCATCTACAGTAGTAAGAA
TAACAGATGAAGTTACCACCACGTTGCATTCACGATTTTCAGGTTCGAGC
CCTTCTGGAACATGTGGAACTGGAAGGCAGGGTAGTCGATTCTTGTGGTG
CCGCCCAAGACGCAGTCTCCACCGTCCTGAGTTCACACGGTCTCCGTGTT
GCAACAAACGACATGAACCCGACGTATGTGTGTGTGTCAGGTCGGCTTCG
GTGCAACCAAGCACTGAATCCGAGGTGTTAGCGTAAAGTCGGTAGGCTGT
GCTCAAAGACACATACGGCAGTGCTGAAAAGTCCCAATCCATGAAACTGG
CCACTATTCAAAGTGGCAAATGTTCAGTGTTCACGTCCAATTTTTAACTT
AACCCGTTGGCGGCGCTTTTTTTTTTGTGTACCTCCCTACCCTCAGATTG
GTCGCAGATACGCACCTGGACGCCGCCACAGACGCGTTTGTCAAGGCGTA
CGTCGAGGAAAGGGTGCGTCCGGACTGGGTCGTGACGAGCCCACCCACAA
GCACGCCTTCGCCATTTTGAAGCAGGCGATGCGGGTCGGGCGTATGGGAG
TAGCCTTCAAGCTGAGGTTGACTTTTCTGGAGCCCACCAAAACCAGAGGG
CGATGGCTAAAGGAAAATAAATGCGCCTGACAGGGTTGTGATGCTTCCCC
GCGCTACGTACCCCGGAAGAGGATGTAGCTCTACTGAGGCGTGGTTTATA
TGGGAGACAGGGCGGGTTGGCGAAGAAGGCCGCAAGCCTGCGATTTGCTT
TTCCTTGCCTGACGGTGCTCTCTGGAATTGTAGGTGCGCTTGTGTCAAAG
TTGCATAGCAATAGCCCAAATGTAAGCGAGTGTCAGAAGTATATGCTCTT
GAACCTGAATGGAAATGTCTCCGTGTTTGCCTCCCATGGCCACTACCAGC
GATACCCCTGTCCGTGCTGACGTCTTGCTTGGTGGTCCGTGATGATGTCT
CGGAGAGACGCCCGACGTTTGAAATTATGTTGTGCTGGAGAACAACGGCA
CAGCAGGACACCCCGTTGTTCCTTGTGTGCCTGCGTGCACACGATGGCCA
GACCTAAGCTGAGCGCGATACGTTTGCGACTGGCGGTCGACAAAGTAGAA
GTTCCTCTTGGTTTGCAACGCAAAATATCATCTACGTTGTTCGATTGTGC
ATTCCCCAAAATTCAGGTTACTAGTGTAATCTTGGGCCACTTTGTATTGT
GCCATCTTGCAGTCGTTGTCGTCGCCAGTGCTGCCAAAAAAACAGCAACA
ACTCCCGCCCCGCTAAAAAAATGACATACACCTGTCCATGACCTAGTCCA
TCAACCCAACACCAATGAAACACACACACCACACACGCCGCACATGGTTT
GTGTGAAGGTGCAGGCGTACAAGGCCGAAACAATTCGTGGTAACTTGTAC
CAGTAGAACAGCCAAACGCGGCTCCACCCCGTTAAGAAAGCCCTCCCTGG
GTCACGAAGTGGACTC
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Coding sequence (CDS) from alignment at chr_00:5324453..5326168-

>Ec-00_004150.2 ID=Ec-00_004150.2|Name=Ec-00_004150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=333bp|location=Sequence derived from alignment at chr_00:5324453..5326168- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGTCTCGGAGAGACGCCCGACGTTTGAAATTATGTTGTGCTGGAGA
ACAACGGCACAGCAGGACACCCCGTTGTTCCTTGTGTGCCTGCGTGCACA
CGATGGCCAGACCTAAGCTGAGCGCGATACGTTTGCGACTGGCGGTCGAC
AAAGTAGAAGTTCCTCTTGGTTTGCAACGCAAAATATCATCTACGTTGTT
CGATTGTGCATTCCCCAAAATTCAGGTTACTAGTGTAATCTTGGGCCACT
TTGTATTGTGCCATCTTGCAGTCGTTGTCGTCGCCAGTGCTGCCAAAAAA
ACAGCAACAACTCCCGCCCCGCTAAAAAAATGA
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Synonyms
The feature 'Ec-00_004150.2' has the following synonyms
Synonym
Esi329_0037
Esi_329_0037