Ec-00_004150.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004150.1
Unique NameEc-00_004150.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length84
Homology
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BLAST of Ec-00_004150.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.230e-53
Identity = 82/121 (67.77%), Postives = 91/121 (75.21%), Query Frame = 2 
Query:  182 MVRGFRASCGKGVHGKEAAAEGEFRRCFACDRLGSRDGCSTRWQHVGDSQTWALLGEVVCNVGSGWRYDRDLQQNHLRVGECICSRTDCVLGLYKKYVWRRQREEKAPLHKMEVGQRSPMG 544
            MVR  RASCGK VHGKE AA GE RRCFACDR GSRDGCST WQHV DS+ WA LGE    VG GW ++RDL  + L+ GECIC R DCV+ LY++Y  RRQREEK  LH M +GQRSPMG
Sbjct:    1 MVRQRRASCGKVVHGKEPAAAGELRRCFACDRPGSRDGCSTNWQHVVDSEYWAELGEWSATVGEGWTHERDLVGDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSPMG 121
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BLAST of Ec-00_004150.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.760e-31
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 2 
Query:  182 MVRGFRASCGKGVHGKEAAAEGEFRRCFACDRLGSRDGCSTRWQHVGDSQTWALLGEVVCNVGSGWRYDRDLQQNHLRVGECICSRTDCVLGLYKK 469
            M RGF  SCG+ VHGKEA   G    CFAC R GSRDGCS+RW+HVG +  WA +GE    VG  W ++RDLQ + L+VGECIC+R DC  G+ +K
Sbjct:    1 MTRGFLGSCGRAVHGKEAPGGG-LGLCFACGRPGSRDGCSSRWKHVGQTTYWAEVGEWSAMVGQEWPHERDLQGDPLKVGECICTRPDCAGGIVQK 95
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BLAST of Ec-00_004150.1 vs. uniprot
Match: D7FTC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC1_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.520e-13
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  212 KGVHGKEAAAEGEFRRCFACDRLGSRDGCSTRWQHVGDSQTWALLGEVVCNVGSGWRYDRD 394
            + VHGKEA   G    CFAC R GSRDGCS+RW+HVG    WA LGE    VG  W ++RD
Sbjct:    7 RAVHGKEAPGGGPGL-CFACGRPGSRDGCSSRWKHVGQGTYWAELGEWSAIVGEEWPHERD 66
[Close]
BLAST of Ec-00_004150.1 vs. uniprot
Match: D7FK37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK37_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.280e-6
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 2 
Query:  515 MEVGQRSPMGGYPSTGSQVGFGATKH 592
            MEVGQRSPMG YPSTGSQVGFG TKH
Sbjct:    1 MEVGQRSPMGRYPSTGSQVGFGTTKH 26
The following BLAST results are available for this feature:
BLAST of Ec-00_004150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGM7_9PHAE4.230e-5367.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE39_9PHAE4.760e-3156.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC1_ECTSI2.520e-1355.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK37_ECTSI1.280e-692.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5325683..5327409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length616
Hectar predicted targeting categorymitochondrion
Gene idEc-00_004150.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004150Ec-00_004150Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5324453..5327409 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004150.1.3Ec-00_004150.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5325683..5325728 -
Ec-00_004150.1.2Ec-00_004150.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5326680..5327068 -
Ec-00_004150.1.1Ec-00_004150.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5327229..5327409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004150.1CDS:Ec-00_004150.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5325683..5325728 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0041505UTR:Ec-00_004150.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 5326886..5327068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004150.1Ec-00_004150.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5325683..5326885 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004150.1 ID=Ec-00_004150.1|Name=Ec-00_004150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=84bp
MLGQAGVMIAIFNRTISGWVSASVPARTAYLVCTRSTCGGARGKKKHLCT
KWRSDSGRRWAGTPRRALRSASVQPSTESEVLA*
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spliced messenger RNA

>Ec-00_004150.1 ID=Ec-00_004150.1|Name=Ec-00_004150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=616bp|location=Sequence derived from alignment at chr_00:5325683..5327409- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGGGGCCTCGTCGTGGGCACCAGACAGAACTGAAGCTCGGTATACTGTTG
TGCTACTTGTGGGAGGGCTGTCGGTGCAAGTTTTGGGCGTTTGGCAGCTT
TCTGTGCGAAGAACCGAAACTGCCTCGCGTCAGGGCTCATATACGCGGAG
CAACTCGGTCCAGCAGCCGCACCAAGCCCAGCATGGTCCGTGGGTTCCGC
GCCTCGTGCGGCAAAGGCGTGCACGGCAAAGAAGCAGCAGCAGAAGGGGA
GTTTCGGCGGTGCTTCGCGTGCGACCGTCTGGGTAGCCGCGACGGGTGCT
CGACAAGGTGGCAACACGTGGGGGACTCGCAAACATGGGCGCTGCTGGGT
GAAGTGGTCTGCAAATGTTGGGTCAGGCTGGCGTTATGATCGCGATCTTC
AACAGAACCATCTCCGGGTGGGTGAGTGCATCTGTTCCCGCACGGACTGC
GTACTTGGTTTGTACAAGAAGTACGTGTGGAGGCGCCAGAGGGAAGAAAA
AGCACCTTTGCACAAAATGGAGGTCGGACAGCGGTCGCCGATGGGCGGGT
ACCCCTCGACGGGCTCTCAGGTCGGCTTCGGTGCAACCAAGCACTGAATC
CGAGGTGTTAGCGTAA
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protein sequence of Ec-00_004150.1

>Ec-00_004150.1 ID=Ec-00_004150.1|Name=Ec-00_004150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=84bp
MLGQAGVMIAIFNRTISGWVSASVPARTAYLVCTRSTCGGARGKKKHLCT
KWRSDSGRRWAGTPRRALRSASVQPSTESEVLA*
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mRNA from alignment at chr_00:5325683..5327409-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004150.1 ID=Ec-00_004150.1|Name=Ec-00_004150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1727bp|location=Sequence derived from alignment at chr_00:5325683..5327409- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGGGGCCTCGTCGTGGGCACCAGACAGAACTGAAGCTCGGTATACTGTTG
TGCTACTTGTGGGAGGGCTGTCGGTGCAAGTTTTGGGCGTTTGGCAGCTT
TCTGTGCGAAGAACCGAAACTGCCTCGCGTCAGGGCTCATATACGCGGAG
CAACTCGGTCCAGCAGCCGCACCAAGCCCAGGTTAGTGCCCAGCATCGAA
TCTTCGGCTCTCAGAGGGTGCGTTGTGTAGCTAAGGTGTTGTGCTTTCTA
CGGCTGTATATTGTCGATCTCTCTCTGTGGATGCCAAAATCGGCGATTTG
ACGAGCAGCTGTATACCGCCATTTTCAACGGTTTTCTGCAGCATGGTCCG
TGGGTTCCGCGCCTCGTGCGGCAAAGGCGTGCACGGCAAAGAAGCAGCAG
CAGAAGGGGAGTTTCGGCGGTGCTTCGCGTGCGACCGTCTGGGTAGCCGC
GACGGGTGCTCGACAAGGTGGCAACACGTGGGGGACTCGCAAACATGGGC
GCTGCTGGGTGAAGTGGTCTGCAAATGTTGGGTCAGGCTGGCGTTATGAT
CGCGATCTTCAACAGAACCATCTCCGGGTGGGTGAGTGCATCTGTTCCCG
CACGGACTGCGTACTTGGTTTGTACAAGAAGTACGTGTGGAGGCGCCAGA
GGGAAGAAAAAGCACCTTTGCACAAAATGGAGGTCGGACAGCGGTCGCCG
ATGGGCGGGTACCCCTCGACGGGCTCTCAGGTATGATGCCTCAGATACAC
CACCTCTGTCTACAGCAGTGTACGATAAGGAAACGGGGGTGTCAGCATTT
ACCGTAGGGTGATTTCTCCACGACCAGGAGGGTACCACTGCCGACAAGGG
TAGTTTTGAAAAAATCACGTCAGGGCTTGCCTGAGAGGTAGGTAGGTGTT
CGCAACCTCATCGCCGTGCTAACACCACCGTGCATTCTCTCGCATCCTTA
AGGTAGGTCGTCTCCGAATTATAGACCGCGCAAAGACACCACACGTAGAA
ACAACCCTATTTCTAGTTTGGTGTGTGCGTTCTGCCTCTCCATTTTTTGG
GATCTCGACCGTCGCCATGTGCCGTTTGTTAATGGCATGGTACCGGGCGG
TGCCCGACCCATCTCTGATCACATGTCTCCCTCGCCCTGCTCCTTATTGA
GTGACAGTTGTTCGGTTAGCCTTACTTGCTGTTTCTCACGTTAGCTCAAT
GGTAAGTACGAGGAATATACCGTTCTGCGTCGTTCTCTTTTGAGGTTTTC
TCCGTGTTGTGAGAAGAGCCTCAACCGCCCCCCCGAAGACATCGGAAGAA
GAATATGTACTGCTGTAGAGCGCCGCTCGTTTTTTTTTCCGCTGCCCGCA
CACTCCCTCGGCCACATTGCACCTACCACCCGAAGACATCGGAAGAAGTA
TATGTACTGCTGTAGAGCGCCGCTCATTTTTTTTTCCGCTGCCCGCACAC
TCTCTCTGCCAGATAGCACCTACCATCTACAGTAGTAAGAATAACAGATG
AAGTTACCACCACGTTGCATTCACGATTTTCAGGTTCGAGCCCTTCTGGA
ACATGTGGAACTGGAAGGCAGGGTAGTCGATTCTTGTGGTGCCGCCCAAG
ACGCAGTCTCCACCGTCCTGAGTTCACACGGTCTCCGTGTTGCAACAAAC
GACATGAACCCGACGTATGTGTGTGTGTCAGGTCGGCTTCGGTGCAACCA
AGCACTGAATCCGAGGTGTTAGCGTAA
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Coding sequence (CDS) from alignment at chr_00:5325683..5327409-

>Ec-00_004150.1 ID=Ec-00_004150.1|Name=Ec-00_004150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=252bp|location=Sequence derived from alignment at chr_00:5325683..5327409- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGGGTCAGGCTGGCGTTATGATCGCGATCTTCAACAGAACCATCTC
CGGGTGGGTGAGTGCATCTGTTCCCGCACGGACTGCGTACTTGGTTTGTA
CAAGAAGTACGTGTGGAGGCGCCAGAGGGAAGAAAAAGCACCTTTGCACA
AAATGGAGGTCGGACAGCGGTCGCCGATGGGCGGGTACCCCTCGACGGGC
TCTCAGGTCGGCTTCGGTGCAACCAAGCACTGAATCCGAGGTGTTAGCGT
AA
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Synonyms
The feature 'Ec-00_004150.1' has the following synonyms
Synonym
Esi329_0037
Esi_329_0037