Ec-00_004140.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004140.1
Unique NameEc-00_004140.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length100
Homology
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BLAST of Ec-00_004140.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.420e-15
Identity = 52/119 (43.70%), Postives = 57/119 (47.90%), Query Frame = -2 
Query:  846 LVADTHLDAATDAFVKAYVEERVRPDWVVTSPPTSTPSPF*SRRCGSGVWE*PSS*G*LFWSPPKPEGDG*RKINAPDRVVMLPRATYPGRGCSSTEAWFIWETGRVGEEGRKPAICFS 1202
            L ADTHLDA ++ F   +  E  RPDW+VTSPP         R  G             F  P K  G    K N P  VV+LPRATY GR CSSTEAWFIW     G E    A  F 
Sbjct:   59 LTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKW-LKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQAFFFD 176
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BLAST of Ec-00_004140.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.720e-8
Identity = 28/46 (60.87%), Postives = 30/46 (65.22%), Query Frame = -2 
Query:  891 LFWSPPKPEGDG*RKINAPDRVVMLPRATYPGRGCSSTEAWFIWET 1028
             F  P K  G    K N PDR+VMLPRATY  R CSSTE WF+WET
Sbjct:   10 TFLGPAKSRGRW-LKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
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BLAST of Ec-00_004140.1 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.640e-6
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  994 PSPSGFGGLQKSQPQLEGYSHTPDPHRLLQNGEGVLV 1104
            P PSGFGGL+KSQPQLE + HTP+P    QN EGVLV
Sbjct:  172 PLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLV 208
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BLAST of Ec-00_004140.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 8.610e-6
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  992 SHRPLVLVGSRKVNLSLKATPIRPTRIACFKMAKACLWVG 1111
            SH PLVLVGSRKV+LSL ATP RP   A FK+AKACL+ G
Sbjct:  172 SHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGG 211
The following BLAST results are available for this feature:
BLAST of Ec-00_004140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE1.420e-1543.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE3.720e-860.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Q9_9PHAE5.640e-670.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE8.610e-672.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5322085..5325522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1204
Hectar predicted targeting categorysignal anchor
Gene idEc-00_004140.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004140Ec-00_004140Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5314212..5326168 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004140.1.1Ec-00_004140.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5322085..5322116 +
Ec-00_004140.1.2Ec-00_004140.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5322764..5322855 +
Ec-00_004140.1.3Ec-00_004140.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5324443..5325522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004140.1CDS:Ec-00_004140.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5322085..5322116 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0041403UTR:Ec-00_004140.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 5324619..5325522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004140.1Ec-00_004140.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5322085..5324618 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004140.1 ID=Ec-00_004140.1|Name=Ec-00_004140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=100bp
MVRKIISTSFSKTVARGLTERWKAQLEDRERLARTPRLRGAAERWSPLRD
PGRAFLTGWSRVWLFYWYKLPRIVSALYACTFTQTMCGVCGVCVSLVLG*
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spliced messenger RNA

>Ec-00_004140.1 ID=Ec-00_004140.1|Name=Ec-00_004140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1204bp|location=Sequence derived from alignment at chr_00:5322085..5325522+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGGAAGATCATCTCAACATCTTTCAGTAAGACCGTGGCCAGAGG
GTTGACGGAGAGGTGGAAAGCTCAGCTGGAGGACCGAGAACGACTGGCAA
GAACGCCAAGGCTGCGTGGAGCAGCTGAACGGTGGAGTCCACTTCGTGAC
CCAGGGAGGGCTTTCTTAACGGGGTGGAGCCGCGTTTGGCTGTTCTACTG
GTACAAGTTACCACGAATTGTTTCGGCCTTGTACGCCTGCACCTTCACAC
AAACCATGTGCGGCGTGTGTGGTGTGTGTGTTTCATTGGTGTTGGGTTGA
TGGACTAGGTCATGGACAGGTGTATGTCATTTTTTTAGCGGGGCGGGAGT
TGTTGCTGTTTTTTTGGCAGCACTGGCGACGACAACGACTGCAAGATGGC
ACAATACAAAGTGGCCCAAGATTACACTAGTAACCTGAATTTTGGGGAAT
GCACAATCGAACAACGTAGATGATATTTTGCGTTGCAAACCAAGAGGAAC
TTCTACTTTGTCGACCGCCAGTCGCAAACGTATCGCGCTCAGCTTAGGTC
TGGCCATCGTGTGCACGCAGGCACACAAGGAACAACGGGGTGTCCTGCTG
TGCCGTTGTTCTCCAGCACAACATAATTTCAAACGTCGGGCGTCTCTCCG
AGACATCATCACGGACCACCAAGCAAGACGTCAGCACGGACAGGGGTATC
GCTGGTAGTGGCCATGGGAGGCAAACACGGAGACATTTCCATTCAGGTTC
AAGAGCATATACTTCTGACACTCGCTTACATTTGGGCTATTGCTATGCAA
CTTTGACACAAGCGCACCTACAATTCCAGAGAGCACCGTCAGGCAAGGAA
AAGCAAATCGCAGGCTTGCGGCCTTCTTCGCCAACCCGCCCTGTCTCCCA
TATAAACCACGCCTCAGTAGAGCTACATCCTCTTCCGGGGTACGTAGCGC
GGGGAAGCATCACAACCCTGTCAGGCGCATTTATTTTCCTTTAGCCATCG
CCCTCTGGTTTTGGTGGGCTCCAGAAAAGTCAACCTCAGCTTGAAGGCTA
CTCCCATACGCCCGACCCGCATCGCCTGCTTCAAAATGGCGAAGGCGTGC
TTGTGGGTGGGCTCGTCACGACCCAGTCCGGACGCACCCTTTCCTCGACG
TACGCCTTGACAAACGCGTCTGTGGCGGCGTCCAGGTGCGTATCTGCGAC
CAAT
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protein sequence of Ec-00_004140.1

>Ec-00_004140.1 ID=Ec-00_004140.1|Name=Ec-00_004140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=100bp
MVRKIISTSFSKTVARGLTERWKAQLEDRERLARTPRLRGAAERWSPLRD
PGRAFLTGWSRVWLFYWYKLPRIVSALYACTFTQTMCGVCGVCVSLVLG*
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mRNA from alignment at chr_00:5322085..5325522+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004140.1 ID=Ec-00_004140.1|Name=Ec-00_004140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3438bp|location=Sequence derived from alignment at chr_00:5322085..5325522+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTTCGGAAGATCATCTCAACATCTTTCAGGTAAAAACACACATAAAA
ATACCAACGTTAGGGGAACACAGGTAGCTGTGCTATCCCGTGACACCTGG
CATACAATTCGAGCGACAAATAACGACATTGATATGATAGCGACTGCTGA
GGGGAGGTCGTCAGAGAAATGCACGTTCTCTGCCATCGGGTTAACGCTAC
ATTGGATGCCCTCCCTTATTGTGCGACTACACACAAAAAACTCAAATTGC
TACCAGTATTCTCTGCTACAAGTACCAACCGGATTGTCGGTCTTGACAGG
GGTCTCCTCTTCACGCCAAGCGGACTCCGGCTCCTCTTAACCACCGGCAA
CAACAAACCTGCTACTGCTCGCCACTCTGGGAGTGCGCCGACTGCAACGA
CAAATGCCCACGCTGCCCCCCCTACATCTGGAAGCGCGTTGGCGGAGATC
TGTAATGACTGTGCAGCTCCCCGCTTCATCTGGAGAACCGCCCAACCGAA
AAGCCTGCGCTGCCCCCCTTCATTTGGAGGCGCGGAGGTGATGAACTGCT
GCCCTCCCCTACATCTCGAGAGCGTAGACCCATTGTTATTGGGTTTAGGC
CTTCTTTTTATGCGCCGCTGGCGCGCAGATCTCATACAAAAACACGCCTC
CTCCAGAGGCCTTATTGACTGGGCTACAGTAAGACCGTGGCCAGAGGGTT
GACGGAGAGGTGGAAAGCTCAGCTGGAGGACCGAGAACGACTGGCAAGAA
CGCCAAGGCTGCGTGGAGCAGGTATGTGGCTACTAATTTTTCCCATTGTC
TTTGCGTACAAGGGTGTTGGGCACTAACTTTGGGGCATCGCCGAAGTGGC
CTTGGATGCTTGGATGGCCTTGGAAATCACGCCGCAGCGCGAGTCTCGCA
GCGCACCATGCGGTGTTCATGGACAGCACTCCTTGTCTCTGCCTCTGCGA
GAAGGAGAGTTCCACAGGATACGCATACGTTCACGCTTATTTGTGATAGT
CGGCACTGATAATTGTGGGTGGGTTCGCATATTCGGGAGCACACCACCTG
CTTGTTAATGTGTTGTGCGCTGCTGCCGTGTACCATGTGTCGTGGTACGC
GCGACAACTCAAGTTGGCCTAGAGAGCACACCACTCAAAGTTTACGCACA
TCAGCAACACTTACAGCTTAGGGATAGGCCTCCCGGTCAAGTGTTTTGTG
TGCACGTAGAAAAGAAGGATCCCTCTCGCCGGTTTCGCAGAGTTGTCTGC
GTTCTACGTAGGCCGTGTTGCACATGTAAGCCATGTCATGTGATGTTGCA
GGTTGGAAACACTCCGCAAGCCGCTGCTGTCTTGTCGGTTACCGTAGGTG
ACACAAGATACCACACCCCCTGAATCTGTTTTCAGAGCTTGATTTCTCCA
CGACAAAATGAGGGCAAGGCCGGAAACGGCGGCGTTGAAGCCGCCTGGCC
AAGAGATTTTTGAGAACGTGTCGTTTGATTTCTGCGTCCTCTTCGTCGTG
GAGTGATTGAGCTTTGACAATCGGTCCAGGGGGTGTGGTATCTTGTGTCA
CCTACGGTAGGATTAGGCCCGAAGAGTGCCGCCGTGCGCCCGTACCCTGT
AGTGTACGGTACATATTACTTTCGCCTGTTGGGCGTGCTGCGTGTACGTA
ACTGCTTGGTGCTCTGAATATGGCCGCAGGCTCAAATATGTAACATGTGC
GGGAGGATACCGTGAACCGCTGTGGTAAAAATAGCACGCGTTGCAGCGGT
AGCGCAAGACACCACACCCCCTTGAACGAATAATTGTAGCAGCCAACCGA
ATATCTTGCACGTGCGATGCCGATGGTAGCAGTAAAGGGTGAATCGAAAC
CCTTCACAACGAAACATCCTTGCTTTCTACTTGTAGGTTCAAGTTGTACT
CCTTCCCCTACGGCCTAGACACAAACAACGTGCGTTGGGTAGAGGACGAT
GACCATGGTAGTTAAGTAAACACCAACAGTACTTGGATCGGAATAGCCAT
GAGGGGATCCATGAGTCTCTTATCCCAGCGCAAAGCTCGTTCCGTGATAT
CGCGCCTCCCCAACCCAACAGACAAATTGGTTCATTGGGTAAACACGTTG
AGGACGCAGTTTATCTTTGATGCCCTTGTACCTTTTGTCCGTCCCGGAGC
TTCATTTTCCCCTACAAAGTTCGTTCACCCCCCGGGGAATTCGCAAAGGC
AAACTGAGGTTTTCGTTGGGTCTCTCTCTGGTGACATTCAACCGGCGAAC
TTCAACTTCGTTTTATCTGTTGTTTTTTTCCCCATAAAAACAGCTAATGC
GAAGACTTTGTTCTCTCCCCGACGCAATATGTATCTCGTGCCAATGTCCT
TGTCACAGCTGAACGGTGGAGTCCACTTCGTGACCCAGGGAGGGCTTTCT
TAACGGGGTGGAGCCGCGTTTGGCTGTTCTACTGGTACAAGTTACCACGA
ATTGTTTCGGCCTTGTACGCCTGCACCTTCACACAAACCATGTGCGGCGT
GTGTGGTGTGTGTGTTTCATTGGTGTTGGGTTGATGGACTAGGTCATGGA
CAGGTGTATGTCATTTTTTTAGCGGGGCGGGAGTTGTTGCTGTTTTTTTG
GCAGCACTGGCGACGACAACGACTGCAAGATGGCACAATACAAAGTGGCC
CAAGATTACACTAGTAACCTGAATTTTGGGGAATGCACAATCGAACAACG
TAGATGATATTTTGCGTTGCAAACCAAGAGGAACTTCTACTTTGTCGACC
GCCAGTCGCAAACGTATCGCGCTCAGCTTAGGTCTGGCCATCGTGTGCAC
GCAGGCACACAAGGAACAACGGGGTGTCCTGCTGTGCCGTTGTTCTCCAG
CACAACATAATTTCAAACGTCGGGCGTCTCTCCGAGACATCATCACGGAC
CACCAAGCAAGACGTCAGCACGGACAGGGGTATCGCTGGTAGTGGCCATG
GGAGGCAAACACGGAGACATTTCCATTCAGGTTCAAGAGCATATACTTCT
GACACTCGCTTACATTTGGGCTATTGCTATGCAACTTTGACACAAGCGCA
CCTACAATTCCAGAGAGCACCGTCAGGCAAGGAAAAGCAAATCGCAGGCT
TGCGGCCTTCTTCGCCAACCCGCCCTGTCTCCCATATAAACCACGCCTCA
GTAGAGCTACATCCTCTTCCGGGGTACGTAGCGCGGGGAAGCATCACAAC
CCTGTCAGGCGCATTTATTTTCCTTTAGCCATCGCCCTCTGGTTTTGGTG
GGCTCCAGAAAAGTCAACCTCAGCTTGAAGGCTACTCCCATACGCCCGAC
CCGCATCGCCTGCTTCAAAATGGCGAAGGCGTGCTTGTGGGTGGGCTCGT
CACGACCCAGTCCGGACGCACCCTTTCCTCGACGTACGCCTTGACAAACG
CGTCTGTGGCGGCGTCCAGGTGCGTATCTGCGACCAAT
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Coding sequence (CDS) from alignment at chr_00:5322085..5325522+

>Ec-00_004140.1 ID=Ec-00_004140.1|Name=Ec-00_004140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=300bp|location=Sequence derived from alignment at chr_00:5322085..5325522+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTTCGGAAGATCATCTCAACATCTTTCAGTAAGACCGTGGCCAGAGG
GTTGACGGAGAGGTGGAAAGCTCAGCTGGAGGACCGAGAACGACTGGCAA
GAACGCCAAGGCTGCGTGGAGCAGCTGAACGGTGGAGTCCACTTCGTGAC
CCAGGGAGGGCTTTCTTAACGGGGTGGAGCCGCGTTTGGCTGTTCTACTG
GTACAAGTTACCACGAATTGTTTCGGCCTTGTACGCCTGCACCTTCACAC
AAACCATGTGCGGCGTGTGTGGTGTGTGTGTTTCATTGGTGTTGGGTTGA
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Synonyms
The feature 'Ec-00_004140.1' has the following synonyms
Synonym
Esi329_0036
Esi_329_0036