Ec-00_004110.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_004110.1
Unique Name	Ec-00_004110.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	260

Homology

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BLAST of Ec-00_004110.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 533 bits (1374), Expect = 7.330e-192
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1

Query:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNYQSVGPS 777
            MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNYQSVGPS
Sbjct:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNYQSVGPS 259

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BLAST of Ec-00_004110.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 441 bits (1134), Expect = 4.700e-144
Identity = 214/251 (85.26%), Postives = 229/251 (91.24%), Query Frame = 1

Query:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYT 753
            MAWATLMKLR+AL+ERA EIYA+R PPAPGESPI+GEDL+S QLE VT E+F ELGNMDQTPVQHEMPVET+LE TGAKDARIATGGKEKERFTLCLAV+ D KKVPLR IFKGTP +PP  PGKGKATQPRKNSIAWE+LP NRSK+G PVGGMSFGVQEKSWCDLRECKLWIK SW LRPNNGS+V+QR CILVLDDFKCHKDD FIA LKR+ANTIVIFIPGGL PL QPLDRMLNK+MKRLLRGMYT
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYT 467

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BLAST of Ec-00_004110.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 422 bits (1085), Expect = 3.530e-143
Identity = 213/277 (76.90%), Postives = 230/277 (83.03%), Query Frame = 1

Query:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATG--------------------------GKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYT 753
            MAWATLMKLR+AL+ERA EIYA+R PPAPGESPI+GEDL+S QLE VT E+F +LGNMDQTPVQ+EMPVET+LEKTGAKDARIATG                          GKEKERFTLCLAV+ D  KVPLR IFKGTP +PP  PGKGKATQPRKNSIAWE+LP NRSK+G PVGGMSFGVQEKSWCDLRE KLWIK SW LRPNNGS+V+QR CILVLDDFKCHKDD FIA LKR+ANTIVIFIPGGLTPLLQPLDRMLNK+MKRLLRGMYT
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYT 426

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BLAST of Ec-00_004110.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 405 bits (1040), Expect = 1.610e-138
Identity = 201/255 (78.82%), Postives = 217/255 (85.10%), Query Frame = 1

Query:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNYQS 765
            MAWAT+MKLREALV RA EIYARR+PPAP ESPIKGEDLT EQL SV AEVF ELGNMDQTPVQHEMPVET+LEKTGAKDARI+TGGKEKERFTL LAV  D KKV  R IFKGTP IPP   GKGK+T PRKNS+AWE+ P NR+K+ +P  GMSFGVQEKSW D REC  WI  SW LRPNNGS+V+QRPCILVLDDFKCHKD+ +IA LKR ANTIVI IPGGLTPLLQPLDRMLNK+MKRLLRG YT Y +
Sbjct:   63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSA 317

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BLAST of Ec-00_004110.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 405 bits (1040), Expect = 7.850e-138
Identity = 201/255 (78.82%), Postives = 218/255 (85.49%), Query Frame = 1

Query:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNYQS 765
            MAWAT+MKLREALV+RA EIYARR+PPAP ESPIKGEDLTSEQL SV AEVF ELGNMDQTPVQHE+PVET+LEKTGAKDARI+TGGKEKERFTL LAV  D KKV  R IFKGTP  PP   GKGK+T PRKNS+AWE+ P NR+K+G+P  GMSFGVQEKSW D REC  WI  SW LRPNNGS+V+QRPCILVLDDFKCHKD+ FIA LKR ANTIVIFIPG LTPLLQPLDRMLNK+MKRLLR  YT Y +
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSA 317

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BLAST of Ec-00_004110.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 398 bits (1022), Expect = 1.470e-135
Identity = 196/250 (78.40%), Postives = 214/250 (85.60%), Query Frame = 1

Query:   16 LMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNYQS 765
            +MKLREALV+RA EIYARR+PPAP ESPIKGEDLTSEQL SV AEVF +LGNMDQTPVQHEMPVET+LEKTGAKDAR++TGG+EKERFTL LAVT D KKV LR IF GTP IPP   GKGK+T PRKNS+AWEM P NR+K+G+P  GMSFGVQEKSW D REC  W   SW LRPNNGS+V+QRPCILVLDDFKCHKD+ FIA LKR ANTIVIFIPGGLTPLLQPLDRMLNK+ KRLLR  YT Y +
Sbjct:    2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSA 251

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BLAST of Ec-00_004110.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 7.280e-134
Identity = 196/251 (78.09%), Postives = 215/251 (85.66%), Query Frame = 1

Query:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYT 753
            MAWATLMKLR+AL+ERA +IYA+R PPAPGE+PI+GEDL+S QLE VT E+F ELGNMDQTPVQHE PVE    +   +  R       +ERFTLCLAV+ D KKVPLR IFKGTP +PP  PGKGKATQPRKNSIAWE+LP NRSK+G PVGGMSFGVQEKSWCDLRECKLWIK SW LRPNNGS+V+QR CILVLDDFKCHKDD FIA LKR+ANTIVIFIPGGLTPLLQPLDRMLNK+MKRLLRGMYT
Sbjct:  187 MAWATLMKLRKALLERAGKIYAQRYPPAPGENPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHETPVE----RLWKRPVRRMPASPPEERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYT 433

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BLAST of Ec-00_004110.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 2.390e-130
Identity = 197/254 (77.56%), Postives = 215/254 (84.65%), Query Frame = 1

Query:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGG-KEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 759
            MAWAT+MKL EALV+RA EIYARR+PPAP ESPIKGEDL SEQL SV AEVF E+GNMDQ PVQHEMPVET+L+KTGAKDARI+TGG  EKERFTL LAVT D KKV  R IF+GTP IPP   GKGK+T+PRKN +AWEM P NR+K+G+P  GMSFGVQEKSW D REC  WI  SW LRPNNGS+V+QRP ILVLDDFKCH D+ FIA LKR ANTIVIFIPGGLTPLLQPLDRMLNK+MKRLLRG YT Y
Sbjct:  257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510

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BLAST of Ec-00_004110.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 386 bits (992), Expect = 1.270e-128
Identity = 196/263 (74.52%), Postives = 213/263 (80.99%), Query Frame = 1

Query:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTL--------RPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNYQS 765
            MAWAT+ KLREALV+RA EIYARR+PPAP ESPIKGEDLTSEQ  SV AEVF ELGNMDQTPVQHEMPVET+LE TG KDARI+TGGKEKERFTL LAV  D K V    IFKGTP IPP   GKGK+T PRKNS+AWE+ P NR+K+G+P  GMSFGVQEKSW   +EC  WI  SW L        RPNNGS+V+QRPCILVLDDFKCHKD+ FIA L R ANTIVIFIPGGLTPLLQPLDRMLNK+MKRLLRG YT Y +
Sbjct:  217 MAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSA 479

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BLAST of Ec-00_004110.1 vs. uniprot
Match: D7G5E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E8_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 4.230e-128
Identity = 182/192 (94.79%), Postives = 184/192 (95.83%), Query Frame = 1

Query:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRP 576
            MAWATLMKLREALVERA EIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEM VET+LEKTGAKDARIATGGKEKERFTLCLAVTGD KKVPLR IFKGTP IPPDRPGKGKATQP KNSIAWEMLP NRSKNGYPVGG SFGVQEKSWCDLRECKLWIKHSWTLRP+NGSLVKQRP
Sbjct:    1 MAWATLMKLREALVERAGEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMLVETALEKTGAKDARIATGGKEKERFTLCLAVTGDGKKVPLRIIFKGTPFIPPDRPGKGKATQPWKNSIAWEMLPGNRSKNGYPVGGTSFGVQEKSWCDLRECKLWIKHSWTLRPDNGSLVKQRP 192

The following BLAST results are available for this feature:

BLAST of Ec-00_004110.1 vs. uniprot

BLAST of Ec-00_004110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FXD3_ECTSI	7.330e-192	100.00	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5K8Y4_9PHAE	4.700e-144	85.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KE45_9PHAE	3.530e-143	76.90	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JUK2_9PHAE	1.610e-138	78.82	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5K6L9_9PHAE	7.850e-138	78.82	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KII4_9PHAE	1.470e-135	78.40	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KRZ1_9PHAE	7.280e-134	78.09	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JHT8_9PHAE	2.390e-130	77.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTG5_9PHAE	1.270e-128	74.52	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
D7G5E8_ECTSI	4.230e-128	94.79	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:5157688..5158689 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	535.8
Seed ortholog evalue	1.1e-149
Seed eggNOG ortholog	2880.D7FXD3
Preferred name	POGK
Length	780
KEGG ko	ko:K09228
Hectar predicted targeting category	other localisation
Gene id	Ec-00_004110.1
EggNOG free text desc.	DNA binding
EggNOG OGs	KOG3105@1,KOG3105@2759
COG Functional cat.	CH
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_004110	Ec-00_004110	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 5157688..5158689 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004110.1.1	Ec-00_004110.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5157688..5157946 +
Ec-00_004110.1.2	Ec-00_004110.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5158169..5158689 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004110.1	CDS:Ec-00_004110.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 5157688..5157946 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004110.1	Ec-00_004110.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 5157688..5158689 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:5157688..5158689+
coding sequence from alignment at chr_00:5157688..5158689+

mRNA sequence

>Ec-00_004110.1 ID=Ec-00_004110.1|Name=Ec-00_004110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=260bp
MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAE
VFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVT
GDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGY
PVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDF
KCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMY
TNYQSVGPS*

spliced messenger RNA

>Ec-00_004110.1 ID=Ec-00_004110.1|Name=Ec-00_004110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=780bp|location=Sequence derived from alignment at chr_00:5157688..5158689+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGGCTACGTTGATGAAGCTGCGCGAGGCTCTGGTGGAGCGAGC
TGATGAGATCTACGCTCGGCGCAACCCGCCTGCACCTGGCGAGAGCCCCA
TCAAAGGAGAGGACCTGACTTCCGAGCAGCTGGAGTCAGTGACGGCAGAA
GTGTTCGTGGAACTCGGCAACATGGACCAGACGCCAGTCCAGCACGAGAT
GCCGGTGGAGACATCCCTGGAGAAGACTGGCGCGAAGGATGCCCGCATCG
CCACAGGAGGGAAAGAGAAGGAACGTTTCACGCTCTGTCTTGCTGTCACG
GGGGACTGCAAGAAGGTCCCGCTGCGCACCATCTTCAAGGGGACGCCGCT
CATCCCGCCGGACAGGCCCGGAAAGGGCAAGGCGACTCAACCGCGGAAGA
ACTCTATCGCGTGGGAGATGCTTCCCGAGAACCGCTCCAAGAACGGCTAC
CCCGTGGGAGGCATGTCCTTCGGCGTCCAGGAGAAGAGCTGGTGTGACCT
GCGGGAGTGCAAGCTGTGGATCAAGCACAGCTGGACTCTCCGTCCCAACA
ACGGAAGCCTCGTCAAGCAGCGCCCGTGCATCTTGGTACTGGACGACTTC
AAGTGCCACAAGGACGACACCTTCATCGCCGAACTCAAGAGGCAGGCAAA
CACCATCGTCATCTTCATCCCCGGCGGGTTGACTCCTCTCCTCCAGCCGC
TTGATCGCATGCTCAACAAGCGGATGAAGCGGCTGCTGCGGGGCATGTAC
ACCAACTACCAAAGCGTCGGTCCAAGCTGA

protein sequence of Ec-00_004110.1

>Ec-00_004110.1 ID=Ec-00_004110.1|Name=Ec-00_004110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=260bp
MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAE
VFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVT
GDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGY
PVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDF
KCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMY
TNYQSVGPS*

mRNA from alignment at chr_00:5157688..5158689+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_004110.1 ID=Ec-00_004110.1|Name=Ec-00_004110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1002bp|location=Sequence derived from alignment at chr_00:5157688..5158689+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTGGGCTACGTTGATGAAGCTGCGCGAGGCTCTGGTGGAGCGAGC
TGATGAGATCTACGCTCGGCGCAACCCGCCTGCACCTGGCGAGAGCCCCA
TCAAAGGAGAGGACCTGACTTCCGAGCAGCTGGAGTCAGTGACGGCAGAA
GTGTTCGTGGAACTCGGCAACATGGACCAGACGCCAGTCCAGCACGAGAT
GCCGGTGGAGACATCCCTGGAGAAGACTGGCGCGAAGGATGCCCGCATCG
CCACAGGAGGTGAGAGTGTACCGTAGCTGCAGTGTTGTTGCTTTTTCTGA
AGTGCGATGCGGATTTGTGGTCGAGAATCTTTGTTGATCGGATGGATACG
GCTGTAGGTACCGGTAAGAGCATCTCTCTCTCTCCCGTTTGCATCCATGT
CAACCATAATCTCTTGTTCCGCAGAATTGTTCAAAACCCCTTCTCCTACC
CCTCACGCCGTGCACCCTCTTTTTCCCTCAGGGAAAGAGAAGGAACGTTT
CACGCTCTGTCTTGCTGTCACGGGGGACTGCAAGAAGGTCCCGCTGCGCA
CCATCTTCAAGGGGACGCCGCTCATCCCGCCGGACAGGCCCGGAAAGGGC
AAGGCGACTCAACCGCGGAAGAACTCTATCGCGTGGGAGATGCTTCCCGA
GAACCGCTCCAAGAACGGCTACCCCGTGGGAGGCATGTCCTTCGGCGTCC
AGGAGAAGAGCTGGTGTGACCTGCGGGAGTGCAAGCTGTGGATCAAGCAC
AGCTGGACTCTCCGTCCCAACAACGGAAGCCTCGTCAAGCAGCGCCCGTG
CATCTTGGTACTGGACGACTTCAAGTGCCACAAGGACGACACCTTCATCG
CCGAACTCAAGAGGCAGGCAAACACCATCGTCATCTTCATCCCCGGCGGG
TTGACTCCTCTCCTCCAGCCGCTTGATCGCATGCTCAACAAGCGGATGAA
GCGGCTGCTGCGGGGCATGTACACCAACTACCAAAGCGTCGGTCCAAGCT
GA

Coding sequence (CDS) from alignment at chr_00:5157688..5158689+

>Ec-00_004110.1 ID=Ec-00_004110.1|Name=Ec-00_004110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=780bp|location=Sequence derived from alignment at chr_00:5157688..5158689+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTGGGCTACGTTGATGAAGCTGCGCGAGGCTCTGGTGGAGCGAGC
TGATGAGATCTACGCTCGGCGCAACCCGCCTGCACCTGGCGAGAGCCCCA
TCAAAGGAGAGGACCTGACTTCCGAGCAGCTGGAGTCAGTGACGGCAGAA
GTGTTCGTGGAACTCGGCAACATGGACCAGACGCCAGTCCAGCACGAGAT
GCCGGTGGAGACATCCCTGGAGAAGACTGGCGCGAAGGATGCCCGCATCG
CCACAGGAGGGAAAGAGAAGGAACGTTTCACGCTCTGTCTTGCTGTCACG
GGGGACTGCAAGAAGGTCCCGCTGCGCACCATCTTCAAGGGGACGCCGCT
CATCCCGCCGGACAGGCCCGGAAAGGGCAAGGCGACTCAACCGCGGAAGA
ACTCTATCGCGTGGGAGATGCTTCCCGAGAACCGCTCCAAGAACGGCTAC
CCCGTGGGAGGCATGTCCTTCGGCGTCCAGGAGAAGAGCTGGTGTGACCT
GCGGGAGTGCAAGCTGTGGATCAAGCACAGCTGGACTCTCCGTCCCAACA
ACGGAAGCCTCGTCAAGCAGCGCCCGTGCATCTTGGTACTGGACGACTTC
AAGTGCCACAAGGACGACACCTTCATCGCCGAACTCAAGAGGCAGGCAAA
CACCATCGTCATCTTCATCCCCGGCGGGTTGACTCCTCTCCTCCAGCCGC
TTGATCGCATGCTCAACAAGCGGATGAAGCGGCTGCTGCGGGGCATGTAC
ACCAACTACCAAAGCGTCGGTCCAAGCTGA

Synonyms

The feature 'Ec-00_004110.1' has the following synonyms


Synonym
Esi0325_0016
Esi_0325_0016