Ec-00_004080.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004080.1
Unique NameEc-00_004080.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length141
Homology
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BLAST of Ec-00_004080.1 vs. uniprot
Match: D7G7X2_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X2_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.280e-63
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 
Query:    1 MAMAKYIVGTVSATKPAATPPDPTPIRRSKKAPSKSSXXXXXXEIPXXXXXXXXXXXXXXXXXXXXXXXXXXRGRPRKQTLAATDINQQAVPRAAAHRLPLTPCKRLPTHTTARPPAFMQHPAYHPRQRRVSYPKTPAAA 420
            MAMAKYIVGTVSATKPAATPPDPTPIRRSKKAPSKSSXXXXXXEIPXXXXXXXXXXXXXXXXXXXXXXXXXXRGRPRKQTLAATDINQQAVPRAAAHRLPLTPCKRLPTHTTARPPAFMQHPAYHPRQRRVSYPKTPAAA
Sbjct:   33 MAMAKYIVGTVSATKPAATPPDPTPIRRSKKAPSKSSXXXXXXEIPXXXXXXXXXXXXXXXXXXXXXXXXXXRGRPRKQTLAATDINQQAVPRAAAHRLPLTPCKRLPTHTTARPPAFMQHPAYHPRQRRVSYPKTPAAA 172
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BLAST of Ec-00_004080.1 vs. uniprot
Match: A0A6H5JFF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 7.690e-37
Identity = 64/76 (84.21%), Postives = 66/76 (86.84%), Query Frame = 3 
Query:    3 GHGQVHRWDCIRHKTGCDAPGPDTHPALQEGAVEVVEEQEAQRDPITVTVFHRPVFFLERRRDALSSQET*AGPPE 230
            GHG VHR DC R  TGCDAPGPDTHP LQEGAVEVVEEQEAQ+ PITVTVFH+PV FLERRRDALSSQ T AGPPE
Sbjct:   32 GHGPVHRSDCFRLTTGCDAPGPDTHPPLQEGAVEVVEEQEAQKGPITVTVFHQPVVFLERRRDALSSQGTEAGPPE 107
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BLAST of Ec-00_004080.1 vs. uniprot
Match: A0A6H5K6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6A7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 7.640e-26
Identity = 74/117 (63.25%), Postives = 79/117 (67.52%), Query Frame = 2 
Query:   20 SLGLYPPQNRLRRPRT-RHPSGAPRRRRRSRRGAR-----STERSHHRHRLPPTRLLPRATPRRPLLPRNISGAARGSRHWQRPTSISRPSHGLPLTGCRS--PHASACPPILRRGP 346
            ++   PP  RLRRPRT RHPSGAPRRRR            STERSHHR RLPPT  LPRATPRRPLLPRN SGA RGS  WQRPTSISRPSH LPL  C+    H +A PP   + P
Sbjct:  282 TVSAAPP--RLRRPRTGRHPSGAPRRRRXXXXXXXXXXXXSTERSHHRPRLPPT-PLPRATPRRPLLPRNRSGAVRGSSLWQRPTSISRPSHRLPLAPCKRLPTHTTARPPASMQHP 395
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BLAST of Ec-00_004080.1 vs. uniprot
Match: A0A6H5KZL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.740e-8
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MAMAKYIVGTVSATKPAATPPDPTPIRRSKKAPSKSS 111
            MAMA+YIV TVS ++PAATPPDPTPIRRSKKAPSKSS
Sbjct:  386 MAMAQYIVRTVSGSQPAATPPDPTPIRRSKKAPSKSS 422
The following BLAST results are available for this feature:
BLAST of Ec-00_004080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7X2_ECTSI1.280e-63100.00Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JFF5_9PHAE7.690e-3784.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6A7_9PHAE7.640e-2663.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZL3_9PHAE1.740e-886.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5083923..5084698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length423
Hectar predicted targeting categoryother localisation
Gene idEc-00_004080.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004080Ec-00_004080Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5083923..5084698 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004080.1.1Ec-00_004080.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5083923..5084002 +
Ec-00_004080.1.2Ec-00_004080.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5084188..5084337 +
Ec-00_004080.1.3Ec-00_004080.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5084506..5084698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004080.1CDS:Ec-00_004080.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5083923..5084002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004080.1Ec-00_004080.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5083923..5084698 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004080.1 ID=Ec-00_004080.1|Name=Ec-00_004080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=141bp
MAMAKYIVGTVSATKPAATPPDPTPIRRSKKAPSKSSRSKKHREIPSPSP
SSTDPSSSSSDAETPSPPKKHKRGRPRKQTLAATDINQQAVPRAAAHRLP
LTPCKRLPTHTTARPPAFMQHPAYHPRQRRVSYPKTPAAA*
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spliced messenger RNA

>Ec-00_004080.1 ID=Ec-00_004080.1|Name=Ec-00_004080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=423bp|location=Sequence derived from alignment at chr_00:5083923..5084698+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATGGCCAAGTACATCGTTGGGACTGTATCCGCCACAAAACCGGC
TGCGACGCCCCCGGACCCGACACCCATCCGGCGCTCCAAGAAGGCGCCGT
CGAAGTCGTCGAGGAGCAAGAAGCACAGAGAGATCCCATCACCGTCACCG
TCTTCCACCGACCCGTCTTCTTCCTCGAGCGACGCCGAGACGCCCTCTCC
TCCCAAGAAACATAAGCGGGGCCGCCCGAGGAAGCAGACACTGGCAGCGA
CCGACATCAATCAGCAGGCCGTCCCACGGGCTGCCGCTCACCGGCTGCCG
CTCACCCCATGCAAGCGCCTGCCCACCCATACTACGGCGCGGCCCCCAGC
TTTCATGCAGCACCCCGCCTACCACCCGCGGCAGCGCCGAGTTTCATACC
CCAAAACCCCGGCAGCTGCATGA
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protein sequence of Ec-00_004080.1

>Ec-00_004080.1 ID=Ec-00_004080.1|Name=Ec-00_004080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=141bp
MAMAKYIVGTVSATKPAATPPDPTPIRRSKKAPSKSSRSKKHREIPSPSP
SSTDPSSSSSDAETPSPPKKHKRGRPRKQTLAATDINQQAVPRAAAHRLP
LTPCKRLPTHTTARPPAFMQHPAYHPRQRRVSYPKTPAAA*
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mRNA from alignment at chr_00:5083923..5084698+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004080.1 ID=Ec-00_004080.1|Name=Ec-00_004080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=776bp|location=Sequence derived from alignment at chr_00:5083923..5084698+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCATGGCCAAGTACATCGTTGGGACTGTATCCGCCACAAAACCGGC
TGCGACGCCCCCGGACCCGACACCCATCCGGTAAGTTGTCTACGAACCAG
TTTGCTCCCTCGGACAGCGGGGTCGGTCAGAGTAGCTCCGTCGAGCACAA
GATTTGTACATGTTTGGCTCATGTCCTCGGTTTGAGTGATGTGCCGGTTA
CTGCAGTCACCGCAGGTTTCTGTTCTTAGCTTTGTTTTTCCGTCCCGACC
GGGAATCGTACACAGGCGCTCCAAGAAGGCGCCGTCGAAGTCGTCGAGGA
GCAAGAAGCACAGAGAGATCCCATCACCGTCACCGTCTTCCACCGACCCG
TCTTCTTCCTCGAGCGACGCCGAGACGCCCTCTCCTCCCAAGAAACATAA
GCGGGGCCGCCCGAGGTGCGTAGAAGATGGTATTGTTTGCTTGAGATTCC
GGTGTCGATGTTCTGCGAGTCTTGGGTGGACAAAACCCCGTTCGCAAGAG
AACGGATGGTTACCCCCTTCTAACACATGTTGTTCCCTTCCCTTTGCGGT
CGATTGACGCGTGATTGCCCACACAATACACAGGAAGCAGACACTGGCAG
CGACCGACATCAATCAGCAGGCCGTCCCACGGGCTGCCGCTCACCGGCTG
CCGCTCACCCCATGCAAGCGCCTGCCCACCCATACTACGGCGCGGCCCCC
AGCTTTCATGCAGCACCCCGCCTACCACCCGCGGCAGCGCCGAGTTTCAT
ACCCCAAAACCCCGGCAGCTGCATGA
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Coding sequence (CDS) from alignment at chr_00:5083923..5084698+

>Ec-00_004080.1 ID=Ec-00_004080.1|Name=Ec-00_004080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=423bp|location=Sequence derived from alignment at chr_00:5083923..5084698+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCATGGCCAAGTACATCGTTGGGACTGTATCCGCCACAAAACCGGC
TGCGACGCCCCCGGACCCGACACCCATCCGGCGCTCCAAGAAGGCGCCGT
CGAAGTCGTCGAGGAGCAAGAAGCACAGAGAGATCCCATCACCGTCACCG
TCTTCCACCGACCCGTCTTCTTCCTCGAGCGACGCCGAGACGCCCTCTCC
TCCCAAGAAACATAAGCGGGGCCGCCCGAGGAAGCAGACACTGGCAGCGA
CCGACATCAATCAGCAGGCCGTCCCACGGGCTGCCGCTCACCGGCTGCCG
CTCACCCCATGCAAGCGCCTGCCCACCCATACTACGGCGCGGCCCCCAGC
TTTCATGCAGCACCCCGCCTACCACCCGCGGCAGCGCCGAGTTTCATACC
CCAAAACCCCGGCAGCTGCATGA
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Synonyms
The feature 'Ec-00_004080.1' has the following synonyms
Synonym
Esi0325_0001
Esi_0325_0001