Ec-00_004010.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004010.1
Unique NameEc-00_004010.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length136
Homology
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BLAST of Ec-00_004010.1 vs. uniprot
Match: D7FWQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ4_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 1.420e-83
Identity = 125/130 (96.15%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:    1 MIMTHNNMFVYLANNSTVVPGGEMDGMNTNLPRAECIQVLAASFAEGVKETTTICALAAASPEQGTARKYLEGTSRAISATIDEDQKLGKETLEGLRGLQGGIEDLLHGTSEPTWEQSLKVAMWVLSQPS 390
            MIMTHNNMFVYLANNSTVVPGGEMDGMNTNLPRAECIQVLAASFAEGVKETTTICALAAASPEQGTARKYLEGTSRAISATIDEDQKLGKETLEGLRGLQGGIEDLLHGTSEPTWEQSLKVAMW    P+
Sbjct:    1 MIMTHNNMFVYLANNSTVVPGGEMDGMNTNLPRAECIQVLAASFAEGVKETTTICALAAASPEQGTARKYLEGTSRAISATIDEDQKLGKETLEGLRGLQGGIEDLLHGTSEPTWEQSLKVAMWAQEHPN 130
The following BLAST results are available for this feature:
BLAST of Ec-00_004010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWQ4_ECTSI1.420e-8396.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4833876..4834928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length408
Hectar predicted targeting categoryother localisation
Gene idEc-00_004010.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004010Ec-00_004010Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4833876..4836434 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004010.1.1Ec-00_004010.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4833876..4834136 +
Ec-00_004010.1.2Ec-00_004010.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4834480..4834590 +
Ec-00_004010.1.3Ec-00_004010.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4834893..4834928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004010.1CDS:Ec-00_004010.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4833876..4834136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004010.1Ec-00_004010.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4833876..4834928 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004010.1 ID=Ec-00_004010.1|Name=Ec-00_004010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=136bp
MIMTHNNMFVYLANNSTVVPGGEMDGMNTNLPRAECIQVLAASFAEGVKE
TTTICALAAASPEQGTARKYLEGTSRAISATIDEDQKLGKETLEGLRGLQ
GGIEDLLHGTSEPTWEQSLKVAMWVLSQPSFSVGL*
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spliced messenger RNA

>Ec-00_004010.1 ID=Ec-00_004010.1|Name=Ec-00_004010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=408bp|location=Sequence derived from alignment at chr_00:4833876..4834928+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCATGACACACAACAACATGTTTGTGTATCTCGCCAACAACTCGAC
GGTGGTCCCGGGAGGGGAGATGGATGGAATGAACACCAACTTGCCAAGAG
CGGAGTGTATTCAAGTCCTTGCGGCTTCGTTCGCTGAGGGTGTTAAAGAG
ACCACGACGATCTGTGCCCTGGCGGCGGCGTCTCCGGAGCAAGGCACCGC
TCGGAAGTATCTTGAGGGCACCAGTCGGGCGATCTCCGCTACCATCGACG
AAGATCAAAAACTCGGAAAGGAAACCCTCGAGGGTTTGCGCGGATTGCAG
GGCGGCATCGAAGATCTCCTTCACGGCACATCCGAGCCGACTTGGGAACA
GAGCTTGAAGGTGGCGATGTGGGTCTTGAGTCAACCTTCTTTCTCTGTCG
GCCTCTGA
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protein sequence of Ec-00_004010.1

>Ec-00_004010.1 ID=Ec-00_004010.1|Name=Ec-00_004010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=136bp
MIMTHNNMFVYLANNSTVVPGGEMDGMNTNLPRAECIQVLAASFAEGVKE
TTTICALAAASPEQGTARKYLEGTSRAISATIDEDQKLGKETLEGLRGLQ
GGIEDLLHGTSEPTWEQSLKVAMWVLSQPSFSVGL*
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mRNA from alignment at chr_00:4833876..4834928+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004010.1 ID=Ec-00_004010.1|Name=Ec-00_004010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1053bp|location=Sequence derived from alignment at chr_00:4833876..4834928+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATCATGACACACAACAACATGTTTGTGTATCTCGCCAACAACTCGAC
GGTGGTCCCGGGAGGGGAGATGGATGGAATGAACACCAACTTGCCAAGAG
CGGAGTGTATTCAAGTCCTTGCGGCTTCGTTCGCTGAGGGTGTTAAAGAG
ACCACGACGATCTGTGCCCTGGCGGCGGCGTCTCCGGAGCAAGGCACCGC
TCGGAAGTATCTTGAGGGCACCAGTCGGGCGATCTCCGCTACCATCGACG
AAGATCAAAAAGTGAGAGATATAATAAGAACCTGTAGTGCATGTAGCTGG
TGCTGTTTTCGTTACATGTCCACTCGACCTGAGCAATACTCGCCATGTGA
CCGCACAACAACAATTCAGTCTCCTGCATCTGCGCGCCCTACGCCTAACT
AACGATAAACGCACACACGTATACTGAAACACATTTTGCTTTGTACGAGC
AATGTGTACGCAGCGTTCGATGCACTTTAGCGTTCCGTTAACGAACAAAA
AGTCGATATCTTCGCTTGTCACCCGCAGTTTTTCAACTGACCAGTAAACG
CTGATTCCAAAATGTGTCCGTGCTGCTTGTCGGCTTTTGCTTGTGCTTGT
GCAGCTCGGAAAGGAAACCCTCGAGGGTTTGCGCGGATTGCAGGGCGGCA
TCGAAGATCTCCTTCACGGCACATCCGAGCCGACTTGGGAACAGAGCTTG
AAGGTGGCGATGTGGGTGAGTCTTGGGTGTTGCATGCATGATTTTGTGAA
AGCTCTGTTTTGCGGACTTGAGCGTTCTCACGAGCGTTGACATGTCAGGC
ACAAGAGCACCCAAACGAATGGGTGGTCTTTCTGTGAGATTATGTGTACT
TCCTCAAAAGAGCACCGAAACGGTTGGTCGTTGTTTGGGGTGCTCAGCAG
GATACTGATCTACGGGGCCTCCGGGGGTTACGTGGATGATGTTTGTGTAT
GATGGACATGATACGTGCGGGGCCCCTCGTGCCTCCGCCGTGCATGCCAC
TCTCTAATCAACCAAAGGTCTTGAGTCAACCTTCTTTCTCTGTCGGCCTC
TGA
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Coding sequence (CDS) from alignment at chr_00:4833876..4834928+

>Ec-00_004010.1 ID=Ec-00_004010.1|Name=Ec-00_004010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=408bp|location=Sequence derived from alignment at chr_00:4833876..4834928+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATCATGACACACAACAACATGTTTGTGTATCTCGCCAACAACTCGAC
GGTGGTCCCGGGAGGGGAGATGGATGGAATGAACACCAACTTGCCAAGAG
CGGAGTGTATTCAAGTCCTTGCGGCTTCGTTCGCTGAGGGTGTTAAAGAG
ACCACGACGATCTGTGCCCTGGCGGCGGCGTCTCCGGAGCAAGGCACCGC
TCGGAAGTATCTTGAGGGCACCAGTCGGGCGATCTCCGCTACCATCGACG
AAGATCAAAAACTCGGAAAGGAAACCCTCGAGGGTTTGCGCGGATTGCAG
GGCGGCATCGAAGATCTCCTTCACGGCACATCCGAGCCGACTTGGGAACA
GAGCTTGAAGGTGGCGATGTGGGTCTTGAGTCAACCTTCTTTCTCTGTCG
GCCTCTGA
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Synonyms
The feature 'Ec-00_004010.1' has the following synonyms
Synonym
Esi0310_0024
Esi_0310_0024