Ec-00_003940.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_003940.2
Unique Name	Ec-00_003940.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	104

Homology

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BLAST of Ec-00_003940.2 vs. uniprot
Match: D7FVS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS3_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.570e-22
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1

Query:  565 ALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFRIVPQRLLVGD 741
            ALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFR   +   VGD
Sbjct:   14 ALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFRTPRKDDDVGD 72

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BLAST of Ec-00_003940.2 vs. uniprot
Match: D7FLB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.830e-17
Identity = 79/237 (33.33%), Postives = 105/237 (44.30%), Query Frame = 1

Query:    1 GSSSVVAGSPGSATQPVRQPGGSVRGFTAAISVVWSFALIGPQQLDYSTGHGRTDPDTNVFCRMSYMFWKPTGLRYEPFMRHSGQRFSRPGLSGTRRSGSPWWSSCSPSFGSSLKTRPVSARTPMVF*GSSPAL*CRMIPSSSQTARDDGVRRLHDRPPPGRPQVGRLGIPGPL*HLGGECASVHRGFALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFR 711
            G S+  A +P  A    RQ GG+ RGFTA ISVVWS A+IG QQL++S G GR DP TN +CRMSY FW+P G++   FM                                SL        T  +   +S A+   +    +  A+ D  R             G      P    GG         ALP++E+AI  MKV+ DD++  D  + A  RV RWA+LE+G      F+
Sbjct:  219 GGSAETAATP--AVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFMMLE-----------------------------SLSDEDSDQSTDEILRAASRAV---IAFDPAVVAKTDAHR------------TGGWDSLEPDDVWGGGTVLFVDKVALPMVEVAIGLMKVIIDDEEL-DNMAMAIKRVRRWAVLEKGGSSNTVFQ 408

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BLAST of Ec-00_003940.2 vs. uniprot
Match: D8LNI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.270e-15
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 1

Query:    1 GSSSVVAGSPGSATQPVRQPGGSVRGFTAAISVVWSFALIGPQQLDYSTGHGRTDPDTNVFCRMSYMFWKPTGLRYEPFM 240
            G S+  A +P  A    RQ GG+ RGFTA ISVVWS A+IG QQL++S G GR DP TN +CRMSY FW+P G++   FM
Sbjct:   47 GGSAETAATP--AVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM 124

[Close]

BLAST of Ec-00_003940.2 vs. uniprot
Match: D7G1E3_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.530e-14
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 1

Query:    1 GSSSVVAGSPGSATQPVRQPGGSVRGFTAAISVVWSFALIGPQQLDYSTGHGRTDPDTNVFCRMSYMFWKPTGLRYEPFM 240
            G S+  A +P  A    RQ GG+ RGFTA ISVVWS A+IG QQL++S G GR DP TN +CRMSY FW+P G++   FM
Sbjct:  221 GGSAETAATP--AVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM 298

[Close]

BLAST of Ec-00_003940.2 vs. uniprot
Match: D7FHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.960e-14
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1

Query:    1 GSSSVVAGSPGSATQPVRQPGGSVRGFTAAISVVWSFALIGPQQLDYSTGHGRTDPDTNVFCRMSYMFWKPTGLRYEPFM 240
            G S+  A +P  A    RQ GG+ RGFTA ISVVWS A+IG QQL++S G GR DP TN +CRMS  FW+P  ++   FM
Sbjct:   14 GGSAETAATP--AVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFM 91

[Close]

BLAST of Ec-00_003940.2 vs. uniprot
Match: D7G5N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.840e-14
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1

Query:  568 LPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFR 711
            LPLLELAIQQMKVLPDD D+TDA SK RSRVNRWAILERG  P + F+
Sbjct:   15 LPLLELAIQQMKVLPDDGDSTDAFSKTRSRVNRWAILERGGSPNQVFQ 62

The following BLAST results are available for this feature:

BLAST of Ec-00_003940.2 vs. uniprot

BLAST of Ec-00_003940.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
D7FVS3_ECTSI	1.570e-22	88.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FLB4_ECTSI	2.830e-17	33.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LNI2_ECTSI	1.270e-15	56.25	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G1E3_ECTSI	1.530e-14	56.25	Uncharacterized protein n=3 Tax=Ectocarpus silicul...	[more]
D7FHA8_ECTSI	1.960e-14	53.75	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G5N5_ECTSI	2.840e-14	79.17	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:4511465..4516675 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	3224
Hectar predicted targeting category	other localisation
Gene id	Ec-00_003940.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_003940	Ec-00_003940	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 4511465..4516675 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003940.2	Ec-00_003940.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 4514734..4515045 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003940.2.1	Ec-00_003940.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 4511465..4511706 +
Ec-00_003940.2.2	Ec-00_003940.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 4512334..4512533 +
Ec-00_003940.2.3	Ec-00_003940.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 4512865..4512987 +
Ec-00_003940.2.4	Ec-00_003940.2.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 4513651..4513801 +
Ec-00_003940.2.5	Ec-00_003940.2.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 4514168..4516675 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003940	5UTR:Ec-00_003940.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 4511465..4511706 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003940.2	CDS:Ec-00_003940.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 4514734..4515045 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003940	3UTR:Ec-00_003940.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 4515046..4516675 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:4511465..4516675+
coding sequence from alignment at chr_00:4511465..4516675+

mRNA sequence

>Ec-00_003940.2 ID=Ec-00_003940.2|Name=Ec-00_003940.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=104bp
MCPLRMFDCCSMACHLSSSYILHFHIRHVSFVVILHPSLPHTSPDVVAAP
RKDDDVGDIANEDSDDEVPETLAPGVGGDVDSETDDGVDADGDGVDAMAV
DAV*

spliced messenger RNA

>Ec-00_003940.2 ID=Ec-00_003940.2|Name=Ec-00_003940.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3224bp|location=Sequence derived from alignment at chr_00:4511465..4516675+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGGCAGCTCGTCGGTCGTCGCGGGTTCTCCGGGAAGTGCGACCCAGCCTG
TCAGGCAGCCAGGAGGCTCAGTACGTGGCTTCACTGCTGCCATCTCTGTG
GTGTGGAGTTTTGCACTCATCGGGCCCCAGCAGCTGGACTACTCTACGGG
GCATGGGCGGACGGACCCTGACACGAACGTATTCTGTAGGATGTCCTACA
TGTTCTGGAAGCCCACCGGTCTACGATACGAGCCCTTCATGAAGGCATTC
CGGTCAGCGCTTCAGTCGGCCCGGGCTCAGTGGCACAAGGCGGTCAGGCT
CGCCGTGGTGGAGTTCGTGCTCTCCCAGCTTCGGTTCGTCGCTAAAGACC
CGTCCAGTGTCGGCAAGGACTCCCATGGTCTTCTGAGGCTCGTCGCCCGC
GCTTTGATGCAGGATGATCCCGAGCAGCTCGCAAACAGCGAGGAGATGAT
GGAGTGCGTCGACTTCATGATCGACCTCCCCCTGGACGCCCACAGGTCGG
GAGGCTGGGAATCCCTGGGCCCCTTTGACATCTGGGGGGGGAATGCGCCT
CTGTTCATCGAGGATGTTGCCTTGCCCCTTCTGGAGCTTGCAATCCAACA
AATGAAAGTGCTGCCGGATGACGATGACACCACGGACGCTTGTTCCAAGG
CCAGGTCGCGGGTGAACCGCTGGGCCATTTTGGAGAGGGGGGATCTCCCA
ACCAGGTTTTTCAGGAGTTGTTCCGCAGCGCCTTCTTGTGGGCGACTGGG
GATAACCAGACGCTCAAGCCCTGCCTGGGTCTAGACGCGAAGTCACTGAA
GCAGGCCGACCTCAAGCAGTACGCGTGTCCTTACCTGTCGAAGCGGAGCA
AGTTTCCAGATGCCAACGTTGTCCTTTGTGTTCATCATGTATAGGCCTGG
GAGCAACATAGTAGTCGCCTCTGATCGCCGCCACATGCCTTCGTCCTATG
TTTGCCAACCTTGCCCTTTCGAATTTTGTGTACACCCCGCGCATGTTCGT
TCGGGGTGTTAGATTCGCAAGCTAGCGAAATATCTCGCGTCGGTTTTGAT
GTCCCAAAAGTGGAATCTGTAGGTTGAGCTTCGGGTTGTGGTCCCAGTCG
CTTAATAAATCCGCATGCATGAGCACTATGTACCACCTTGGATTGTCCGT
AAGTCAACTCAAAGTCACTCCTTCCCCAGTGGTTTTCCGTTCCGTGTTGC
CTCGTGGCGCCTTCGTCCATTTTTTCCAGCGCTTAATTTTCGTATAATTG
CGTCGCGATCCTAAAACTTCGATAAGCTGCACATGTGCCCGCTTCGAATG
TTTGATTGCTGTTCCATGGCGTGTCATTTGTCGTCATCTTACATCCTTCA
CTTCCACATACGTCACGTGTCATTTGTCGTCATCTTACATCCTTCACTTC
CACATACGTCACCCGATGTTGTGGCAGCCCCTCGCAAGGACGACGACGTT
GGAGATATCGCGAACGAGGACTCCGATGACGAGGTCCCGGAGACCCTCGC
CCCTGGCGTTGGCGGTGACGTGGACAGCGAGACCGATGATGGCGTAGACG
CCGATGGCGACGGCGTGGACGCAATGGCCGTCGACGCCGTCTAGACCTGA
CCTCCCCTATATTGGCGGCATATATATTCAGGCGCGAGGGTTGATTTCCG
GTCTCATTTTCCTGTGATAAACCGTGTTTCCGATTCGGATTGCTACAGTG
GGTTGTGCCGCGAAGAGAGTACAAAGAAAACTATTTGTGGCTGAGGTGTT
ATCGCCAATTTCCCGTTTGTGGCTGACGGATTTTGAAAGGAGAATAATGA
TGGAAAAGCGACCGACACATACTCGAGCGTCGCGTCCTAAAAATTATTTG
TACCGATCGGTGTGCTCGTCTTTGGAAACCGGCAAATTCTTGTGTCCTGC
ATCATCGTATAAGGTCGTGCGCAACAACTCATGCAAAGCCATCAACTGAG
ACAGTGCTGCCGATGGTACATAGGTGTGTCTGGAATTATGAAAGAAGTAT
GTAACGTAGCGAGTTATTCCGAATCATGGTTGGATATTAGTTTACGTGCA
CTCTGTTTATTCACAGGCGTGCTTCGTCGGTTGTAGAGCATTGCATTGAT
CGATGATGGGTTTGTTCAGGCACAGCGGTGTTGTGTGTGGTTTCGTGGTT
AGTAGAAAAGTTTGTGAAGACACAAACATGCAGACAGCAGAGAGAGAGAC
CCGGCGTACCCCTGATGGTACTAGAATTGTAAGTTTGTAGTTCCGCCGTT
TACTTTTAATCTTTGGTGAAATACTTAGTGTGTACGTTACCCCTCTAAGC
CCTGAGGGTGTGGCATATACATTACCTAAACCATCGCAGAATACATCCGA
CCATTTCATGGATCATGGTTGGATATTTGTTGACGTGCACCCTGTTTATT
CATAGGAATACATCCGATTTTTAATGGATCATGGTTGGATATTTGTTTAC
GAGCACCCTGTTTATTCACAGGAATACATCCGATTTTTTAATGGATCATG
GTTGGATATTTGTTGACGCGCACCCTGTTTATTCACAGGAATACATCCGA
TTTTTAATGGATCATGGTTGGATACTTGTTTACGTGGACCCTGTTTATTC
ACAGGCGTACTTCGTCGGTTGTAGAGCATTGCATTGATCGATGATGGGTT
TGTTCAGGCACAGCGGTGTTGTGTGGTTTCGTGTTTCGTAGGGAGGTTTT
GTATGTGAAGACAAATACATGCAGACAGCAGAGAGAGAGACCCGGCGCTG
CCCCTGATGGTACTAGTATTGTAAGTTTGTAGTTCCGCCGTTTACTTTTA
ATCTTTGGTGAAATATATAGTGTGTACGTCACCCCCCTATAGCATGGAGG
GTGTGGCACATACATACCTACACCATCGCAGAATACATCCGATTTTTTAA
TGGATCATGGTTGGATATTTTTTTACGTACACCCTGTTTAATCACAGGGA
CGCTTCGTCGGTTGTAGAGCATTGTATTGATCGATGATGGGTTTGTTCAG
GCACAGCGGTGTTGAGTGGTTTCGTGTTTAGTTAAAGGTTTTGTCTGTGA
AGACACAAACTTGCAGACAGCAGAGAGAGACCGCCCTGATGATAGTAGCA
CTTTAGGTTTGTTGCATGTTCAAACATTGTTTCTCTGTTTGATTCAGAAT
ATGTGGGGCAATGTTTGGTGGTGCCCATAGGAAAGTGTGTCGCAACTAGC
GGTAGGCCTCATGAGATGACATAT

protein sequence of Ec-00_003940.2

>Ec-00_003940.2 ID=Ec-00_003940.2|Name=Ec-00_003940.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=104bp
MCPLRMFDCCSMACHLSSSYILHFHIRHVSFVVILHPSLPHTSPDVVAAP
RKDDDVGDIANEDSDDEVPETLAPGVGGDVDSETDDGVDADGDGVDAMAV
DAV*

mRNA from alignment at chr_00:4511465..4516675+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_003940.2 ID=Ec-00_003940.2|Name=Ec-00_003940.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5211bp|location=Sequence derived from alignment at chr_00:4511465..4516675+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGGCAGCTCGTCGGTCGTCGCGGGTTCTCCGGGAAGTGCGACCCAGCCTG
TCAGGCAGCCAGGAGGCTCAGTACGTGGCTTCACTGCTGCCATCTCTGTG
GTGTGGAGTTTTGCACTCATCGGGCCCCAGCAGCTGGACTACTCTACGGG
GCATGGGCGGACGGACCCTGACACGAACGTATTCTGTAGGATGTCCTACA
TGTTCTGGAAGCCCACCGGTCTACGATACGAGCCCTTCATGAGTGAGTGT
TGTGTTTTTTTTTGGTCATTCGAATAAGTTTTTGTGTAAACTGATGAACT
CACAGGTAGAGCGATGCGTCAAAGTTGCCCTGATCGTAAGGTCTCTAGTC
ATCGCGGTGGTCGAATACAACGTTGCTTATGCTGCTGAAATATTATAGTT
TGGCACATACACCACACAGCCCCGGAGTTCACGCCAATTGTAGTTTTTCG
TAAGAGTCGGTCAATCGGCCTCCGTCCTTCGCTTTAGTTTGCCGGCGGAA
ACATATCGATTGCCGTTATCGGTCGGTGTTGCAGGCCCGCCCTCTTACGA
TGTGGCCACTCGGCTACCCCTGGGGACACCTTAGCAGGGGGCGGGGGTCA
ACACTGTAGGCACCCTGTGATGGGGGAGGGGGGGGGGGTAAACAGGGTTC
ATAGCGAAGGCAAGGTCCGAACCTCGACCTTGTTAAGGTCTTGTGCCTTG
GTGGGGTCTAAGGTCTCCACCTTGTACATGCTCAACACGCTGTCCGGTGT
TGTTGGTGATGCCCTGACAGGGTCATGAAATTTTTAGAGGTGAACACGTG
GACACCTTACTGTTGCCTGACGTGTCCGTTCACTATCGTCCATTCGTTTT
TGCACTGCTCCAAACACAGAGGCATTCCGGTCAGCGCTTCAGTCGGCCCG
GGCTCAGTGGCACAAGGCGGTCAGGCTCGCCGTGGTGGAGTTCGTGCTCT
CCCAGCTTCGGTTCGTCGCTAAAGACCCGTCCAGTGTCGGCAAGGACTCC
CATGGTCTTCTGAGGCTCGTCGCCCGCGCTTTGATGCAGGATGATCCCGA
GCAGCTCGCAAACAGCGAGGTTAGTATGTGGGTCGTGTGTCTTTCGTTGT
GTTGAGGTTGACACACACTGCAATTTGCACTATAGCCGCTATAGCGGCAG
CAGTGTAAGTGACGGGATGATACCGACATTTCATGCCCGTATGTCCTTAA
TGCCTCCACCTACGATGTTTTGGAGTTTGGTGCCAATAGTTTCCCGTTGC
AGAATTAAGCGGTTTATGGTTCCCGGACGCGAACGAGTAGTCGTATACGC
AGGAAGGGGGTGCAATCACAAACGGATGGGCTGCCATCATCATGTACATC
ATGCATGTGGTGGTAAACCTACCCTTCGTCTTGTTTGTTTCCGCACACAG
GAGATGATGGAGTGCGTCGACTTCATGATCGACCTCCCCCTGGACGCCCA
CAGGTCGGGAGGCTGGGAATCCCTGGGCCCCTTTGACATCTGGGGGGGGA
ATGCGCCTCTGTTCATCGAGGATGTGAGTAAAGGCTCGGAAAAATGAATG
TGGCCGGCGTGGTTGCGCCCATTAATTATACGCCATTGACGTCCCCGTTT
TTTTTTTTTATACACACTCTGTCATGATTAAAAATTATGCAGAACAAAAC
TGTATAGCGTGATAATCACGAGTAGCAAGTATGGAGGTAGGTAAAATGTA
TGGTATTGTACATTCGTCTCGGAAGCAAACTGCTGCTGTAGCCAAGGATC
AAACTTTTCCGGTAGGTCGTCGGTCGATTTTTCTTCACAGTTCCAAGTCG
AAGCGAGAGTGTTTGCCAGAATGTTGCCGGCCATGATTCCGAACTGTATA
CCGCCGTTACGTTCTCGTTTGTAAGTCGCTTTGAGGATGGGGGATGTGGG
TGTTGGTGGAAGACACACCACCCGACCGTGTGGTGTGTACAGCAAGCTCT
CTGCACAAAAACCCACTTATTAAAGTTGATACTTAGCTGCGGACAGGCGA
ACATTAAGAGTCGCGAGCCCAAATATTCTTGAGAGCTAGCTCTGCGAGAA
ACGCCCTGCGGCTGTGTTTGGCGTCGAATACTAAAGATTCACGGGGTAAA
AACTACATACCTTTATATTTTACCAGCCCTCGTAACGCCTCGAATTGTGC
CCACGTCGGCTTATTTCTATTTGTACTGAACACCAGGTTGCCTTGCCCCT
TCTGGAGCTTGCAATCCAACAAATGAAAGTGCTGCCGGATGACGATGACA
CCACGGACGCTTGTTCCAAGGCCAGGTCGCGGGTGAACCGCTGGGCCATT
TTGGAGAGGGGGGATCTCCCAACCAGGTTTTTCAGGAGTGAGTACGAGAC
ATACCCTAAATGTTCTTATGTACACAAAGTAGGGTATAGCACACACACCC
TCATCATTTGGTGCTCTGCAACACGACAAGGAAAACATGTGGTCGGATAT
ATTTTTTGTTGTTCCATTTTTCGGATCTTACCAAGTCATATTATGCGCAA
GTCATATTATGCGAAAGGCTAGCTATTTTCTGCGAGATGAATCTCCCCTG
AGCGGCTTGTGGTATTTAATGCATGTAGACGACTACGCTACTCTCGCGAG
ATTTGTTCTAGGCTATACCACACACCCCGTAGGCGTATACACTGCAAAAC
ATGCACACTACAACCTTGTCTTCCGCCGTCCCCTCGCCTTTTAAACACGA
CAGGTTGTTCCGCAGCGCCTTCTTGTGGGCGACTGGGGATAACCAGACGC
TCAAGCCCTGCCTGGGTCTAGACGCGAAGTCACTGAAGCAGGCCGACCTC
AAGCAGTACGCGTGTCCTTACCTGTCGAAGCGGAGCAAGTTTCCAGATGC
CAACGTTGTCCTTTGTGTTCATCATGTATAGGCCTGGGAGCAACATAGTA
GTCGCCTCTGATCGCCGCCACATGCCTTCGTCCTATGTTTGCCAACCTTG
CCCTTTCGAATTTTGTGTACACCCCGCGCATGTTCGTTCGGGGTGTTAGA
TTCGCAAGCTAGCGAAATATCTCGCGTCGGTTTTGATGTCCCAAAAGTGG
AATCTGTAGGTTGAGCTTCGGGTTGTGGTCCCAGTCGCTTAATAAATCCG
CATGCATGAGCACTATGTACCACCTTGGATTGTCCGTAAGTCAACTCAAA
GTCACTCCTTCCCCAGTGGTTTTCCGTTCCGTGTTGCCTCGTGGCGCCTT
CGTCCATTTTTTCCAGCGCTTAATTTTCGTATAATTGCGTCGCGATCCTA
AAACTTCGATAAGCTGCACATGTGCCCGCTTCGAATGTTTGATTGCTGTT
CCATGGCGTGTCATTTGTCGTCATCTTACATCCTTCACTTCCACATACGT
CACGTGTCATTTGTCGTCATCTTACATCCTTCACTTCCACATACGTCACC
CGATGTTGTGGCAGCCCCTCGCAAGGACGACGACGTTGGAGATATCGCGA
ACGAGGACTCCGATGACGAGGTCCCGGAGACCCTCGCCCCTGGCGTTGGC
GGTGACGTGGACAGCGAGACCGATGATGGCGTAGACGCCGATGGCGACGG
CGTGGACGCAATGGCCGTCGACGCCGTCTAGACCTGACCTCCCCTATATT
GGCGGCATATATATTCAGGCGCGAGGGTTGATTTCCGGTCTCATTTTCCT
GTGATAAACCGTGTTTCCGATTCGGATTGCTACAGTGGGTTGTGCCGCGA
AGAGAGTACAAAGAAAACTATTTGTGGCTGAGGTGTTATCGCCAATTTCC
CGTTTGTGGCTGACGGATTTTGAAAGGAGAATAATGATGGAAAAGCGACC
GACACATACTCGAGCGTCGCGTCCTAAAAATTATTTGTACCGATCGGTGT
GCTCGTCTTTGGAAACCGGCAAATTCTTGTGTCCTGCATCATCGTATAAG
GTCGTGCGCAACAACTCATGCAAAGCCATCAACTGAGACAGTGCTGCCGA
TGGTACATAGGTGTGTCTGGAATTATGAAAGAAGTATGTAACGTAGCGAG
TTATTCCGAATCATGGTTGGATATTAGTTTACGTGCACTCTGTTTATTCA
CAGGCGTGCTTCGTCGGTTGTAGAGCATTGCATTGATCGATGATGGGTTT
GTTCAGGCACAGCGGTGTTGTGTGTGGTTTCGTGGTTAGTAGAAAAGTTT
GTGAAGACACAAACATGCAGACAGCAGAGAGAGAGACCCGGCGTACCCCT
GATGGTACTAGAATTGTAAGTTTGTAGTTCCGCCGTTTACTTTTAATCTT
TGGTGAAATACTTAGTGTGTACGTTACCCCTCTAAGCCCTGAGGGTGTGG
CATATACATTACCTAAACCATCGCAGAATACATCCGACCATTTCATGGAT
CATGGTTGGATATTTGTTGACGTGCACCCTGTTTATTCATAGGAATACAT
CCGATTTTTAATGGATCATGGTTGGATATTTGTTTACGAGCACCCTGTTT
ATTCACAGGAATACATCCGATTTTTTAATGGATCATGGTTGGATATTTGT
TGACGCGCACCCTGTTTATTCACAGGAATACATCCGATTTTTAATGGATC
ATGGTTGGATACTTGTTTACGTGGACCCTGTTTATTCACAGGCGTACTTC
GTCGGTTGTAGAGCATTGCATTGATCGATGATGGGTTTGTTCAGGCACAG
CGGTGTTGTGTGGTTTCGTGTTTCGTAGGGAGGTTTTGTATGTGAAGACA
AATACATGCAGACAGCAGAGAGAGAGACCCGGCGCTGCCCCTGATGGTAC
TAGTATTGTAAGTTTGTAGTTCCGCCGTTTACTTTTAATCTTTGGTGAAA
TATATAGTGTGTACGTCACCCCCCTATAGCATGGAGGGTGTGGCACATAC
ATACCTACACCATCGCAGAATACATCCGATTTTTTAATGGATCATGGTTG
GATATTTTTTTACGTACACCCTGTTTAATCACAGGGACGCTTCGTCGGTT
GTAGAGCATTGTATTGATCGATGATGGGTTTGTTCAGGCACAGCGGTGTT
GAGTGGTTTCGTGTTTAGTTAAAGGTTTTGTCTGTGAAGACACAAACTTG
CAGACAGCAGAGAGAGACCGCCCTGATGATAGTAGCACTTTAGGTTTGTT
GCATGTTCAAACATTGTTTCTCTGTTTGATTCAGAATATGTGGGGCAATG
TTTGGTGGTGCCCATAGGAAAGTGTGTCGCAACTAGCGGTAGGCCTCATG
AGATGACATAT

Coding sequence (CDS) from alignment at chr_00:4511465..4516675+

>Ec-00_003940.2 ID=Ec-00_003940.2|Name=Ec-00_003940.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=312bp|location=Sequence derived from alignment at chr_00:4511465..4516675+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCCCGCTTCGAATGTTTGATTGCTGTTCCATGGCGTGTCATTTGTC
GTCATCTTACATCCTTCACTTCCACATACGTCACGTGTCATTTGTCGTCA
TCTTACATCCTTCACTTCCACATACGTCACCCGATGTTGTGGCAGCCCCT
CGCAAGGACGACGACGTTGGAGATATCGCGAACGAGGACTCCGATGACGA
GGTCCCGGAGACCCTCGCCCCTGGCGTTGGCGGTGACGTGGACAGCGAGA
CCGATGATGGCGTAGACGCCGATGGCGACGGCGTGGACGCAATGGCCGTC
GACGCCGTCTAG

Synonyms

The feature 'Ec-00_003940.2' has the following synonyms


Synonym
Esi0299_0005
Esi_0299_0005