Ec-00_003940.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003940.1
Unique NameEc-00_003940.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length118
Homology
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BLAST of Ec-00_003940.1 vs. uniprot
Match: D7FVS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS3_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 5.130e-75
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 MQDDPEQLANSEVALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFRTPRKDDDVGDIANEDSDDEVPETLAPGVGGDVDSETDDGVDADGDGVDAMAVDAV 351
            MQDDPEQLANSEVALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFRTPRKDDDVGDIANEDSDDEVPETLAPGVGGDVDSETDDGVDADGDGVDAMAVDAV
Sbjct:    1 MQDDPEQLANSEVALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFRTPRKDDDVGDIANEDSDDEVPETLAPGVGGDVDSETDDGVDADGDGVDAMAVDAV 117
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BLAST of Ec-00_003940.1 vs. uniprot
Match: D7G5N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N5_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.060e-25
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 MQDDPEQLANSEVALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFR 186
            MQDDPE+LA SEV LPLLELAIQQMKVLPDD D+TDA SK RSRVNRWAILERG  P + F+
Sbjct:    1 MQDDPEELAKSEVVLPLLELAIQQMKVLPDDGDSTDAFSKTRSRVNRWAILERGGSPNQVFQ 62
The following BLAST results are available for this feature:
BLAST of Ec-00_003940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVS3_ECTSI5.130e-75100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5N5_ECTSI2.060e-2579.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4512498..4515045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length354
Hectar predicted targeting categoryother localisation
Gene idEc-00_003940.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003940Ec-00_003940Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4511465..4516675 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003940.1.1Ec-00_003940.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4512498..4512533 +
Ec-00_003940.1.2Ec-00_003940.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4513651..4513801 +
Ec-00_003940.1.3Ec-00_003940.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4514879..4515045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003940.1CDS:Ec-00_003940.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4512498..4512533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003940.1Ec-00_003940.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4512498..4515045 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003940.1 ID=Ec-00_003940.1|Name=Ec-00_003940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=118bp
MQDDPEQLANSEVALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAI
LERGDLPTRFFRTPRKDDDVGDIANEDSDDEVPETLAPGVGGDVDSETDD
GVDADGDGVDAMAVDAV*
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spliced messenger RNA

>Ec-00_003940.1 ID=Ec-00_003940.1|Name=Ec-00_003940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=354bp|location=Sequence derived from alignment at chr_00:4512498..4515045+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGATGATCCCGAGCAGCTCGCAAACAGCGAGGTTGCCTTGCCCCT
TCTGGAGCTTGCAATCCAACAAATGAAAGTGCTGCCGGATGACGATGACA
CCACGGACGCTTGTTCCAAGGCCAGGTCGCGGGTGAACCGCTGGGCCATT
TTGGAGAGGGGGGATCTCCCAACCAGGTTTTTCAGGACCCCTCGCAAGGA
CGACGACGTTGGAGATATCGCGAACGAGGACTCCGATGACGAGGTCCCGG
AGACCCTCGCCCCTGGCGTTGGCGGTGACGTGGACAGCGAGACCGATGAT
GGCGTAGACGCCGATGGCGACGGCGTGGACGCAATGGCCGTCGACGCCGT
CTAG
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protein sequence of Ec-00_003940.1

>Ec-00_003940.1 ID=Ec-00_003940.1|Name=Ec-00_003940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=118bp
MQDDPEQLANSEVALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAI
LERGDLPTRFFRTPRKDDDVGDIANEDSDDEVPETLAPGVGGDVDSETDD
GVDADGDGVDAMAVDAV*
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mRNA from alignment at chr_00:4512498..4515045+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003940.1 ID=Ec-00_003940.1|Name=Ec-00_003940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2548bp|location=Sequence derived from alignment at chr_00:4512498..4515045+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGGATGATCCCGAGCAGCTCGCAAACAGCGAGGTTAGTATGTGGGT
CGTGTGTCTTTCGTTGTGTTGAGGTTGACACACACTGCAATTTGCACTAT
AGCCGCTATAGCGGCAGCAGTGTAAGTGACGGGATGATACCGACATTTCA
TGCCCGTATGTCCTTAATGCCTCCACCTACGATGTTTTGGAGTTTGGTGC
CAATAGTTTCCCGTTGCAGAATTAAGCGGTTTATGGTTCCCGGACGCGAA
CGAGTAGTCGTATACGCAGGAAGGGGGTGCAATCACAAACGGATGGGCTG
CCATCATCATGTACATCATGCATGTGGTGGTAAACCTACCCTTCGTCTTG
TTTGTTTCCGCACACAGGAGATGATGGAGTGCGTCGACTTCATGATCGAC
CTCCCCCTGGACGCCCACAGGTCGGGAGGCTGGGAATCCCTGGGCCCCTT
TGACATCTGGGGGGGGAATGCGCCTCTGTTCATCGAGGATGTGAGTAAAG
GCTCGGAAAAATGAATGTGGCCGGCGTGGTTGCGCCCATTAATTATACGC
CATTGACGTCCCCGTTTTTTTTTTTTATACACACTCTGTCATGATTAAAA
ATTATGCAGAACAAAACTGTATAGCGTGATAATCACGAGTAGCAAGTATG
GAGGTAGGTAAAATGTATGGTATTGTACATTCGTCTCGGAAGCAAACTGC
TGCTGTAGCCAAGGATCAAACTTTTCCGGTAGGTCGTCGGTCGATTTTTC
TTCACAGTTCCAAGTCGAAGCGAGAGTGTTTGCCAGAATGTTGCCGGCCA
TGATTCCGAACTGTATACCGCCGTTACGTTCTCGTTTGTAAGTCGCTTTG
AGGATGGGGGATGTGGGTGTTGGTGGAAGACACACCACCCGACCGTGTGG
TGTGTACAGCAAGCTCTCTGCACAAAAACCCACTTATTAAAGTTGATACT
TAGCTGCGGACAGGCGAACATTAAGAGTCGCGAGCCCAAATATTCTTGAG
AGCTAGCTCTGCGAGAAACGCCCTGCGGCTGTGTTTGGCGTCGAATACTA
AAGATTCACGGGGTAAAAACTACATACCTTTATATTTTACCAGCCCTCGT
AACGCCTCGAATTGTGCCCACGTCGGCTTATTTCTATTTGTACTGAACAC
CAGGTTGCCTTGCCCCTTCTGGAGCTTGCAATCCAACAAATGAAAGTGCT
GCCGGATGACGATGACACCACGGACGCTTGTTCCAAGGCCAGGTCGCGGG
TGAACCGCTGGGCCATTTTGGAGAGGGGGGATCTCCCAACCAGGTTTTTC
AGGAGTGAGTACGAGACATACCCTAAATGTTCTTATGTACACAAAGTAGG
GTATAGCACACACACCCTCATCATTTGGTGCTCTGCAACACGACAAGGAA
AACATGTGGTCGGATATATTTTTTGTTGTTCCATTTTTCGGATCTTACCA
AGTCATATTATGCGCAAGTCATATTATGCGAAAGGCTAGCTATTTTCTGC
GAGATGAATCTCCCCTGAGCGGCTTGTGGTATTTAATGCATGTAGACGAC
TACGCTACTCTCGCGAGATTTGTTCTAGGCTATACCACACACCCCGTAGG
CGTATACACTGCAAAACATGCACACTACAACCTTGTCTTCCGCCGTCCCC
TCGCCTTTTAAACACGACAGGTTGTTCCGCAGCGCCTTCTTGTGGGCGAC
TGGGGATAACCAGACGCTCAAGCCCTGCCTGGGTCTAGACGCGAAGTCAC
TGAAGCAGGCCGACCTCAAGCAGTACGCGTGTCCTTACCTGTCGAAGCGG
AGCAAGTTTCCAGATGCCAACGTTGTCCTTTGTGTTCATCATGTATAGGC
CTGGGAGCAACATAGTAGTCGCCTCTGATCGCCGCCACATGCCTTCGTCC
TATGTTTGCCAACCTTGCCCTTTCGAATTTTGTGTACACCCCGCGCATGT
TCGTTCGGGGTGTTAGATTCGCAAGCTAGCGAAATATCTCGCGTCGGTTT
TGATGTCCCAAAAGTGGAATCTGTAGGTTGAGCTTCGGGTTGTGGTCCCA
GTCGCTTAATAAATCCGCATGCATGAGCACTATGTACCACCTTGGATTGT
CCGTAAGTCAACTCAAAGTCACTCCTTCCCCAGTGGTTTTCCGTTCCGTG
TTGCCTCGTGGCGCCTTCGTCCATTTTTTCCAGCGCTTAATTTTCGTATA
ATTGCGTCGCGATCCTAAAACTTCGATAAGCTGCACATGTGCCCGCTTCG
AATGTTTGATTGCTGTTCCATGGCGTGTCATTTGTCGTCATCTTACATCC
TTCACTTCCACATACGTCACGTGTCATTTGTCGTCATCTTACATCCTTCA
CTTCCACATACGTCACCCGATGTTGTGGCAGCCCCTCGCAAGGACGACGA
CGTTGGAGATATCGCGAACGAGGACTCCGATGACGAGGTCCCGGAGACCC
TCGCCCCTGGCGTTGGCGGTGACGTGGACAGCGAGACCGATGATGGCGTA
GACGCCGATGGCGACGGCGTGGACGCAATGGCCGTCGACGCCGTCTAG
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Coding sequence (CDS) from alignment at chr_00:4512498..4515045+

>Ec-00_003940.1 ID=Ec-00_003940.1|Name=Ec-00_003940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=354bp|location=Sequence derived from alignment at chr_00:4512498..4515045+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGGATGATCCCGAGCAGCTCGCAAACAGCGAGGTTGCCTTGCCCCT
TCTGGAGCTTGCAATCCAACAAATGAAAGTGCTGCCGGATGACGATGACA
CCACGGACGCTTGTTCCAAGGCCAGGTCGCGGGTGAACCGCTGGGCCATT
TTGGAGAGGGGGGATCTCCCAACCAGGTTTTTCAGGACCCCTCGCAAGGA
CGACGACGTTGGAGATATCGCGAACGAGGACTCCGATGACGAGGTCCCGG
AGACCCTCGCCCCTGGCGTTGGCGGTGACGTGGACAGCGAGACCGATGAT
GGCGTAGACGCCGATGGCGACGGCGTGGACGCAATGGCCGTCGACGCCGT
CTAG
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Synonyms
The feature 'Ec-00_003940.1' has the following synonyms
Synonym
Esi0299_0005
Esi_0299_0005