Ec-00_003650.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003650.1
Unique NameEc-00_003650.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length87
Homology
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BLAST of Ec-00_003650.1 vs. uniprot
Match: D7FRZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ3_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 7.810e-49
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 2 
Query:  242 MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG 499
            MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG
Sbjct:    1 MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG 86
The following BLAST results are available for this feature:
BLAST of Ec-00_003650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRZ3_ECTSI7.810e-49100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3808293..3811616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1459
Hectar predicted targeting categoryother localisation
Gene idEc-00_003650.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003650Ec-00_003650Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3808176..3812684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003650.1Ec-00_003650.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3809093..3810215 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003650.1.1Ec-00_003650.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3808293..3808350 +
Ec-00_003650.1.2Ec-00_003650.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3808908..3809126 +
Ec-00_003650.1.3Ec-00_003650.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3809663..3809798 +
Ec-00_003650.1.4Ec-00_003650.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3810125..3810229 +
Ec-00_003650.1.5Ec-00_003650.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3810676..3811616 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0036505UTR:Ec-00_003650.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3808293..3808350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003650.1CDS:Ec-00_003650.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3809093..3809126 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0036503UTR:Ec-00_003650.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3810216..3810229 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003650.1 ID=Ec-00_003650.1|Name=Ec-00_003650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=87bp
MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPA
LIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG*
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spliced messenger RNA

>Ec-00_003650.1 ID=Ec-00_003650.1|Name=Ec-00_003650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1459bp|location=Sequence derived from alignment at chr_00:3808293..3811616+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TCCCAAAAAGCAAGTTTCTGGAGCAGCCCCAAACGGCCTCAGGCGAGCTT
CTGTGGCGTCTGATCTGAATCGACTTCTTCGACAGCAGCACCTGATCTCA
CCACGTCACCTCATCAAGCAGCAAGCAACCACTCGGAGGAACATTTTATC
TTTTTGGACAAGCACCCGAGCCGTGCTCGGCACCCGAGAGAGCAGCGGAC
AGGGCGTACCCAGTAGCCGTGAGCGACCTAGGTCTTTGGAGCAATGTCGG
CGCGTACCTTTGGTTCATACTGTGCTGGGCGAGGGCAACTACCCACACAG
ACGTCGCCATCAAGCTCCGGCCAAGCTGAGGCACCTGCTGCATTGTACCT
ACAAGTGGACTCTGCGAATCAGAGAGCCTTTAGTACCCCTGCATTGATCA
TTACCTCGGAGAGGGGGTACTTTGAAAATAACGGCGTGCGACGTACTGAT
GACGACGTGGATGCTCATGGAAAGCAAGAATCACAGCTGTGTGATGGGGG
GTGATGGGTGATGATGAGCTTTTAGGAAGTGGGTGAGAAGATATGAGGGC
CAACACATCTGACAGAGAAGGTCATGTTGGGCGAAAGACTTCAAGTTCGC
GACACGGGCCGTGCACGTGATGGAGAAGAGCCCGGGCCGTGTATACTGGT
GATGCGGCTGCAACAAGGGTCAACCAAAGCTGGCGGGGATGCGTTGGCTA
ATAATATGTAGAATTTGTGGTTGGCGCGCATGAAGCGTTGCGGTGGAGTG
CAAAGTATTTGTGGTAATAATGTTTGTTCCGCAGTGTGGTAGCATTTATT
TGAGGGCAAATGCTGTCAGGGGTTCATAGTTGAAGATCGTCTGCACGAAT
ACCGCCCTAGAGGTGGTAGGAAGAACTTTTGTTATCAGCGGGTGGCGGTA
CAATAGGGTCAGGACAATTTCTTCGTCGTTGATGGCTGGCTGCGTCTCGC
CTGAGGTAGACCATCATGGGTTGTTTGAACGTGAGAACAAGTATTAATAG
CACTGGGTTAGAGACCCCGTCTTGGTTTACTGGACGTTGGGTCCGTGTAC
AAAATAAAGTACGGTGCCTATTGCTCCACAAAAATGAGGGGAAAAAATCA
GCTGGTGGTACTGCAAGGCACTGCTGCTGCAGTGCAGGTAACAAGACCGC
GTGCGGCATTTGTTACCCGAAAGCACCTGAGAAAAAAATATCTAAGTCTA
CGTAATTACAAGATAAGACAAACGTCTGGGATACGACATTGGTGGTGTCG
GCGCGTGTTCTGTGTCATCACGCTCGCGGTCTCTTGTCGAGAGCGTATGC
ATGAAGGAGTTACTTTAGTTCCTTATATTCCTCCAATCTGAGGTCCTCTT
TCCTTGGATCCTTTCGAGTTTGAAGGGATTGAATGATGGGATATAATATT
TATTTGTTGTCTGTTGTGTGACGGCGGGACGAAACGACGTGTGATCACGA
CACGAACGG
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protein sequence of Ec-00_003650.1

>Ec-00_003650.1 ID=Ec-00_003650.1|Name=Ec-00_003650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=87bp
MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPA
LIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG*
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mRNA from alignment at chr_00:3808293..3811616+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003650.1 ID=Ec-00_003650.1|Name=Ec-00_003650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3324bp|location=Sequence derived from alignment at chr_00:3808293..3811616+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TCCCAAAAAGCAAGTTTCTGGAGCAGCCCCAAACGGCCTCAGGCGAGCTT
CTGTGGCGGTGAGCACGTACCCTGGCATGTACTGAGGGGTCAGCTTAGCT
TGGCCGTTGCGTTGGGTCCGCCGAGAGATAGAGAAGCAACTCATCGGTGA
TCAGTTGTATTTTTTTAGAGAATAGCAAGAGACGTGGTGTCGTGTGTGTG
TGTTTCGCGTACCCTCTCTCTCCCCTCCCGACAACACACACCCTCGCACC
TGCACCTGCTGCACATCCGTACAGGCCACCCATACATGGATGTGGTGAGG
ATCCAAACATGAGCACTCCTCCCCTCCTCGGGGGCTCGTTCCTTCGCAGT
AGAGCTGCTCTTCGGCTGCAGTGTGCACGCGCATCCGAGAGAGCTCGCTG
CTGTACCCACCAGGCCCACCCGCTCTTTCCGGTTCTCGGAACGAATAAAC
AAAAAAGGCACGCACGTGTGTGTGTCCCCAGCCTCTACCGGGCGGCCACC
GCCGTAAACTGCTAGCGGGTGATGATCTGATGTATTTGGTTGCATTGTTC
GAGGTGAGGTAAAATAGTGCAGCAGCATCCCAACGCCCTCTCCGTGCTGC
TCCGTTCGCCCCCAGTCTGATCTGAATCGACTTCTTCGACAGCAGCACCT
GATCTCACCACGTCACCTCATCAAGCAGCAAGCAACCACTCGGAGGAACA
TTTTATCTTTTTGGACAAGCACCCGAGCCGTGCTCGGCACCCGAGAGAGC
AGCGGACAGGGCGTACCCAGTAGCCGTGAGCGACCTAGGTCTTTGGAGCA
ATGTCGGCGCGTACCTTTGGTTCATACTGTGCTGGTGAGTGGAGAGATAG
AGCAAACAGCACCACACAGAAGAGATGATATGTATGTAGCTGTGTAAGTA
GCAAAGTGCTTGTAGCAGTGTATGCAAATACCGTATATGACACAAGATAA
CACACCCCCTTGACCGATTTTCAAAGACCGATTTCTCAACAGCAGGAAGA
CTCACACCGCCGAAAACGGCGGCGTTGGAACCGTCTCGTTGAGAGCTTTT
GGAAAATGTATCATTTCGTTTATGTATCCTCTTCGTCGTCGAGTAATCGA
TCTTTGAAAATCGGGCCAGGGTGTGTGTTATCTTGTGTCATATACGGTAG
CGCAGTTGTTGCCGACATGTGTAAGAAGGGTAGGTACCCAGGGTTGACAG
TCACGTGGATCGGGTGCTTGGGAAGCGCATTGTGATGTTGTGGTGGCTCG
TGCGTGTGCGCTGTGACCGTCCGTTCTGTTTTCGTTCGTCATATGTCTTC
TTCCTCTTTATTATCTCGATGCATGCCTCTGTGACTGCTCCTCTTCTTCC
GTTTGACCTCCTGAGAACAGGGCGAGGGCAACTACCCACACAGACGTCGC
CATCAAGCTCCGGCCAAGCTGAGGCACCTGCTGCATTGTACCTACAAGTG
GACTCTGCGAATCAGAGAGCCTTTAGTACCCCTGCATTGATCATTACCTC
GGAGAGGCAAGTAACCAACCAAGTGCAGCCATATCCACGCTGGGATGGAT
GGGCAATGCGTAGGGCCAAAGTGAACGGTCGTTAAGTACGATTGTACATC
GTACAACGTATCTATGCATACTGCTGCTGTCAATGGTGGTGCCCCGCTTG
ATGTTCTCCTTGGGGATTAGATGGCCGTCAAGCACGAAGGTGTTTCTGCT
GTGCATTGCGTAGTACAGTGCGTCCCGCGTTGCGATGAAGCTGGTGGTGT
TGTTTTTCTTGACTCCGCCGCCGGTCGCTGCTGCTCATGCTACTATTTTC
TGCTGCTGCCGCTCCTGCTCTTCGCTCTAAAGGGGGTACTTTGAAAATAA
CGGCGTGCGACGTACTGATGACGACGTGGATGCTCATGGAAAGCAAGAAT
CACAGCTGTGTGATGGGGGGTGATGGGTGATGATGAGGTAGGTGCGGTTG
TTTCCTAACGTATTAGTCTATGTGGCCGTGGACAGCAGTTTCACGGGCAT
CCATTTTTTGTTGATGCTGTATGTCGTGAGACGAAGGAGGTGGATGCATG
AGTGTCGTGTGTAGTCCAGAGGAGGCGTTTACATCACCCTCTACAAGGCG
ATGTTCTTGTACTAGTTGCCGCTCGCCCAGGAACACTTTTCCATCTTAAA
ATGCGCCGCGAGACTTTTTGTTCTGGTACCTTGAGGGATGGTACGAAAGT
GACGGTGTTGTTGTGAAGACATGCAGCCTGTTAACAACATCGGCACGTTT
CCTCGCTTTTCCTACTCTTGATTTCGTACTAGTGAGCAGTGGTCGCCGTG
CGTATTATGCATAGGAATTGAAAACTTGTTGCTTCCCTTCCGCCCGGCCC
GCCTACTCTCCCTTGATCACGAACATCGCGAAGCTTTTAGGAAGTGGGTG
AGAAGATATGAGGGCCAACACATCTGACAGAGAAGGTCATGTTGGGCGAA
AGACTTCAAGTTCGCGACACGGGCCGTGCACGTGATGGAGAAGAGCCCGG
GCCGTGTATACTGGTGATGCGGCTGCAACAAGGGTCAACCAAAGCTGGCG
GGGATGCGTTGGCTAATAATATGTAGAATTTGTGGTTGGCGCGCATGAAG
CGTTGCGGTGGAGTGCAAAGTATTTGTGGTAATAATGTTTGTTCCGCAGT
GTGGTAGCATTTATTTGAGGGCAAATGCTGTCAGGGGTTCATAGTTGAAG
ATCGTCTGCACGAATACCGCCCTAGAGGTGGTAGGAAGAACTTTTGTTAT
CAGCGGGTGGCGGTACAATAGGGTCAGGACAATTTCTTCGTCGTTGATGG
CTGGCTGCGTCTCGCCTGAGGTAGACCATCATGGGTTGTTTGAACGTGAG
AACAAGTATTAATAGCACTGGGTTAGAGACCCCGTCTTGGTTTACTGGAC
GTTGGGTCCGTGTACAAAATAAAGTACGGTGCCTATTGCTCCACAAAAAT
GAGGGGAAAAAATCAGCTGGTGGTACTGCAAGGCACTGCTGCTGCAGTGC
AGGTAACAAGACCGCGTGCGGCATTTGTTACCCGAAAGCACCTGAGAAAA
AAATATCTAAGTCTACGTAATTACAAGATAAGACAAACGTCTGGGATACG
ACATTGGTGGTGTCGGCGCGTGTTCTGTGTCATCACGCTCGCGGTCTCTT
GTCGAGAGCGTATGCATGAAGGAGTTACTTTAGTTCCTTATATTCCTCCA
ATCTGAGGTCCTCTTTCCTTGGATCCTTTCGAGTTTGAAGGGATTGAATG
ATGGGATATAATATTTATTTGTTGTCTGTTGTGTGACGGCGGGACGAAAC
GACGTGTGATCACGACACGAACGG
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Coding sequence (CDS) from alignment at chr_00:3808293..3811616+

>Ec-00_003650.1 ID=Ec-00_003650.1|Name=Ec-00_003650.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=261bp|location=Sequence derived from alignment at chr_00:3808293..3811616+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGGCGCGTACCTTTGGTTCATACTGTGCTGGGCGAGGGCAACTACC
CACACAGACGTCGCCATCAAGCTCCGGCCAAGCTGAGGCACCTGCTGCAT
TGTACCTACAAGTGGACTCTGCGAATCAGAGAGCCTTTAGTACCCCTGCA
TTGATCATTACCTCGGAGAGGGGGTACTTTGAAAATAACGGCGTGCGACG
TACTGATGACGACGTGGATGCTCATGGAAAGCAAGAATCACAGCTGTGTG
ATGGGGGGTGA
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Synonyms
The feature 'Ec-00_003650.1' has the following synonyms
Synonym
Esi0225_0050
Esi_0225_0050