Ec-00_003580.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003580.1
Unique NameEc-00_003580.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length201
Homology
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BLAST of Ec-00_003580.1 vs. uniprot
Match: D7FRR6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR6_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 1.190e-120
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 
Query:    1 MRALYAALXXXXXXXXXXXXXXXXXXXXXXXXXXLLEGPVGSKGHDGKYQLPVACRDLVGCPSLGFNPQAHIDIDPASEALRQQSALREDSSCPRAEWEGRCPPSSTMLLASRMGGSCIAAGCVHRETQSMVGGDDELLRVITSEVTERLQAEKPYLTRSFYAHVRGLRRFFAKSNLPCVLATECIRRVSAAAVVSWPIG 600
            MRALYAALXXXXXXXXXXXXXXXXXXXXXXXXXXLLEGPVGSKGHDGKYQLPVACRDLVGCPSLGFNPQAHIDIDPASEALRQQSALREDSSCPRAEWEGRCPPSSTMLLASRMGGSCIAAGCVHRETQSMVGGDDELLRVITSEVTERLQAEKPYLTRSFYAHVRGLRRFFAKSNLPCVLATECIRRVSAAAVVSWPIG
Sbjct:    1 MRALYAALXXXXXXXXXXXXXXXXXXXXXXXXXXLLEGPVGSKGHDGKYQLPVACRDLVGCPSLGFNPQAHIDIDPASEALRQQSALREDSSCPRAEWEGRCPPSSTMLLASRMGGSCIAAGCVHRETQSMVGGDDELLRVITSEVTERLQAEKPYLTRSFYAHVRGLRRFFAKSNLPCVLATECIRRVSAAAVVSWPIG 200
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BLAST of Ec-00_003580.1 vs. uniprot
Match: D7G532_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G532_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 2.680e-79
Identity = 157/179 (87.71%), Postives = 162/179 (90.50%), Query Frame = 1 
Query:    1 MRALYAALXXXXXXXXXXXXXXXXXXXXXXXXXXLLEGPVGSKGHDGKYQLPVACRDLVGCPSLGFNPQA--HIDIDPASEALRQQSALREDSSCPRAEWEGRCPPSSTMLLASRMGGSCIAAGCVHRETQSMVGGD-DELLRVITSEVTERLQAEKPYLTRSFYAHVRGLRRFFAKSN 528
            M ALYAALXXXXXXXXXXXXXXXXXXXXXXXXX LLEGPVGSKGHDGKYQLPVACRDLVGCPSLGF+PQA  HIDIDPASE LRQQSALRED SC RAEWEGRCPPSSTMLLASRM GSCIA GCVHRETQSM G D DELLRVITSEVT+RLQAEK  +T+SFYAHVRGLRR F K+ 
Sbjct:    1 MGALYAALXXXXXXXXXXXXXXXXXXXXXXXXXLLLEGPVGSKGHDGKYQLPVACRDLVGCPSLGFSPQASEHIDIDPASETLRQQSALREDPSCTRAEWEGRCPPSSTMLLASRMAGSCIAEGCVHRETQSMAGEDEDELLRVITSEVTQRLQAEKRNMTKSFYAHVRGLRRSFGKAQ 179
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BLAST of Ec-00_003580.1 vs. uniprot
Match: D8LCE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE6_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.300e-31
Identity = 73/150 (48.67%), Postives = 89/150 (59.33%), Query Frame = 1 
Query:  103 LLEGPVGSKGHDGKYQLPVACRDL---VGCPSLGFNPQAHIDIDPA-SEALRQQSALREDSSCPRAEWEGRCPPSSTMLLASRMGGSCIAAGCVHRETQSMV------GGDDELLRVITSEVTERLQAEKPYLTRSFYAHVRGLRRFFAK 522
            L+EG  GS    GKY+LP  CR +   V C  LGF    ++  +PA   A R Q+ +R+  SC   EWE RCPP +TMLL+ + GG C AAGCV    Q  V      G D  +LR +T +VT RL+AEKP L RSFY HVRGLRR F K
Sbjct:   37 LVEGEEGSLDAAGKYRLPAICRGVPSPVTCTPLGFTNDHNMVEEPAWLLAYRSQADIRQHPSCSPVEWEQRCPPGATMLLSKKRGG-CPAAGCVAATAQESVNVGQDVGDDAAILRAVTGQVTARLRAEKPDLPRSFYWHVRGLRRAFDK 185
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BLAST of Ec-00_003580.1 vs. uniprot
Match: D7G4D4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D4_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.560e-27
Identity = 69/154 (44.81%), Postives = 87/154 (56.49%), Query Frame = 1 
Query:  103 LLEGPVGSKGHDGKYQLPVACRD--LVGCPSLGFNPQAHID--IDPASEALRQQSALREDSSCPRAEWEGRCPPSSTMLLASRMGGSCIAAGCV--------HRETQSMVGGDDELLRVITSEVTERLQAEKPYLTRSFYAHVRGLRRFFAKSN 528
            L+EG  GS    GKY+LP  C     V CP LGFN  A  D  + P+  A RQQ+ LR   SCPR EWE RCPP +TMLLA +  G C AAGCV        ++E Q     + E+LR +T++ T  LQA KP   ++FY HV G +R + K  
Sbjct:   30 LVEGEAGSLDDFGKYRLPPPCGGELAVACPRLGFNSAAMNDGSMTPSWLAFRQQADLRLAPSCPRVEWEKRCPPGATMLLAEKRRGGCRAAGCVAVGGEPNDNKEEQD----ESEILRAVTAQQTALLQAAKPATPKTFYQHVVGQQRAYGKDE 179
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BLAST of Ec-00_003580.1 vs. uniprot
Match: A0A6H5KMQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.780e-25
Identity = 68/154 (44.16%), Postives = 85/154 (55.19%), Query Frame = 1 
Query:  103 LLEGPVGSKGHDGKYQLPVACRD--LVGCPSLGFNPQA-HIDIDPASE--ALRQQSALREDSSCPRAEWEGRCPPSSTMLLASRMGGSCIAAGCVHRETQSMVGG-------DDELLRVITSEVTERLQAEKPYLTRSFYAHVRGLRRFFAKSN 528
            L+EG  GS    GKY+LP  C     V CP LGFN    H D    +   A RQQ+ LR   SC   EWE RCPP +TMLLA +  G C AAGCV       VGG       D+E+LR +T++ T  L+A KP + +SFY HV G +R + K+ 
Sbjct:   39 LVEGEAGSLDAFGKYRLPTPCGGELAVACPKLGFNAATLHNDGSMTASWLAFRQQADLRLAPSCSPMEWEKRCPPGATMLLAEKRRGGCRAAGCV------AVGGELNDDNDDNEILRAVTAQQTALLKAAKPAMPKSFYQHVAGRQRAYGKAR 186
[Close]
BLAST of Ec-00_003580.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.690e-22
Identity = 61/129 (47.29%), Postives = 74/129 (57.36%), Query Frame = 1 
Query:  175 VGCPSLGFNPQAHIDIDPASE--ALRQQSALREDSSCPRAEWEGRCPPSSTMLLASRMGGSCIAAGCVHRETQSMVGG-------DDE--LLRVITSEVTERLQAEKPYLTRSFYAHVRGLRRFFAKSN 528
            V CP LGFN  A  D    +   A +QQS LR   SCP AEWE RCPP + MLLA +  G C AAGCV       VGG       DDE  +LRV+T++ T  LQA KP + ++FY HV G +R +AK  
Sbjct:   12 VACPKLGFNAAAINDDAMTASWLAFQQQSGLRAAESCPPAEWEDRCPPGAIMLLAEKRRGGCRAAGCV------AVGGELNDNNKDDEWEILRVVTAQQTALLQAAKPTMPKTFYQHVAGQQRAYAKDE 134
[Close]
BLAST of Ec-00_003580.1 vs. uniprot
Match: A0A6H5JU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU04_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.270e-12
Identity = 39/71 (54.93%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  175 VGCPSLGFNPQA-HIDIDPASE-ALRQQSAL---REDSSCPRAEWEGRCPPSSTMLLASRMGGSCIAAGCV 372
            V CP LGFN  A H D   AS  A +QQS L   R   SCP  EWE RCPP +TMLLA +  G C AAGC+
Sbjct:   12 VACPKLGFNAAAIHDDAMTASWLAFQQQSGLFGLRAAESCPPTEWEDRCPPGATMLLAEKRRGGCRAAGCI 82
The following BLAST results are available for this feature:
BLAST of Ec-00_003580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRR6_ECTSI1.190e-120100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G532_ECTSI2.680e-7987.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCE6_ECTSI2.300e-3148.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4D4_ECTSI1.560e-2744.81Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KMQ6_9PHAE1.780e-2544.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE6_ECTSI2.690e-2247.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU04_9PHAE3.270e-1254.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3549216..3550889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length603
Hectar predicted targeting categorysignal peptide
Gene idEc-00_003580.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003580Ec-00_003580Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3549216..3550889 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003580.1.1Ec-00_003580.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3549216..3549379 +
Ec-00_003580.1.2Ec-00_003580.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3549634..3549862 +
Ec-00_003580.1.3Ec-00_003580.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3550407..3550535 +
Ec-00_003580.1.4Ec-00_003580.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3550809..3550889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003580.1CDS:Ec-00_003580.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3549216..3549379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003580.1Ec-00_003580.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3549216..3550889 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003580.1 ID=Ec-00_003580.1|Name=Ec-00_003580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=201bp
MRALYAALLLLLLVTGACGKKASTPQQEACCAALLLEGPVGSKGHDGKYQ
LPVACRDLVGCPSLGFNPQAHIDIDPASEALRQQSALREDSSCPRAEWEG
RCPPSSTMLLASRMGGSCIAAGCVHRETQSMVGGDDELLRVITSEVTERL
QAEKPYLTRSFYAHVRGLRRFFAKSNLPCVLATECIRRVSAAAVVSWPIG
*
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spliced messenger RNA

>Ec-00_003580.1 ID=Ec-00_003580.1|Name=Ec-00_003580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=603bp|location=Sequence derived from alignment at chr_00:3549216..3550889+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGCACTGTACGCGGCCCTTCTCCTCCTCCTCCTCGTGACCGGGGC
ATGCGGGAAGAAGGCGAGCACACCCCAGCAGGAAGCGTGTTGCGCGGCGC
TCTTGTTGGAGGGTCCCGTAGGGTCCAAGGGTCACGACGGGAAGTACCAG
CTACCCGTTGCGTGCCGTGACCTGGTCGGCTGCCCGAGCCTTGGGTTCAA
TCCCCAAGCACACATCGACATCGACCCGGCGAGCGAGGCCCTCCGCCAGC
AGTCCGCCCTGCGCGAGGACTCCTCGTGTCCGCGCGCCGAGTGGGAGGGC
AGGTGCCCGCCCTCCTCCACCATGCTCCTGGCGAGCAGGATGGGGGGATC
CTGCATCGCTGCGGGATGTGTCCACCGCGAGACCCAGTCGATGGTGGGGG
GCGATGATGAGCTTTTGAGGGTGATCACCTCAGAGGTGACTGAGAGACTG
CAGGCTGAGAAGCCTTACCTTACTCGGTCGTTCTACGCCCACGTGCGGGG
ACTTCGGCGTTTCTTCGCCAAGAGTAACCTTCCTTGTGTTCTGGCTACCG
AATGTATTCGGAGAGTTTCTGCTGCTGCTGTGGTGAGCTGGCCCATCGGA
TAG
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protein sequence of Ec-00_003580.1

>Ec-00_003580.1 ID=Ec-00_003580.1|Name=Ec-00_003580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=201bp
MRALYAALLLLLLVTGACGKKASTPQQEACCAALLLEGPVGSKGHDGKYQ
LPVACRDLVGCPSLGFNPQAHIDIDPASEALRQQSALREDSSCPRAEWEG
RCPPSSTMLLASRMGGSCIAAGCVHRETQSMVGGDDELLRVITSEVTERL
QAEKPYLTRSFYAHVRGLRRFFAKSNLPCVLATECIRRVSAAAVVSWPIG
*
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mRNA from alignment at chr_00:3549216..3550889+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003580.1 ID=Ec-00_003580.1|Name=Ec-00_003580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1674bp|location=Sequence derived from alignment at chr_00:3549216..3550889+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGGCACTGTACGCGGCCCTTCTCCTCCTCCTCCTCGTGACCGGGGC
ATGCGGGAAGAAGGCGAGCACACCCCAGCAGGAAGCGTGTTGCGCGGCGC
TCTTGTTGGAGGGTCCCGTAGGGTCCAAGGGTCACGACGGGAAGTACCAG
CTACCCGTTGCGTGGTGAGTGTTGAGCTTGTTGCAAGTCATTCATTCGTG
AAATGAACGGACTGGTCAACCAATTGTTTTTTTCGTGCGCATTGCAAGCG
TTCCTTCGTTGATAGAACAGAGCAGGACCATAAACTTACACAGCATCAGC
AGCAGCAGCAGTACAAACTTCCATCGGAGTGGGATTGTCAGCACCAACAT
CGTTCGTTACGAAGTGCCTTCTCCTTGTTGTGTCCTGCGGGTGTCCCGCC
CATGTGTTACCTTTACAGCCGTGACCTGGTCGGCTGCCCGAGCCTTGGGT
TCAATCCCCAAGCACACATCGACATCGACCCGGCGAGCGAGGCCCTCCGC
CAGCAGTCCGCCCTGCGCGAGGACTCCTCGTGTCCGCGCGCCGAGTGGGA
GGGCAGGTGCCCGCCCTCCTCCACCATGCTCCTGGCGAGCAGGATGGGGG
GATCCTGCATCGCTGCGGGATGTGTCCACCGCGAGACCCAGTCGATGGTG
AGACCGGCGTCTCAACGTACCTACCGTATACGACACGTACAAGTGAAGTT
TTTGTGCATGCATGGTCCAAAGAGCAGGTGCGATCGATTATTTACCTCGT
TGTTACAGGTGTGTGAATTATTTCTTCGTTCCTGACGTTTTGTTCGCAGC
AGCAGCCAGTTCATGCCGTGTACCATACATAGACTACAGCGGCATGTATG
TAGACCCCTAAGACCCCTAAGCAAACAGCAGCCTCATTGGCCACCACGGC
CCGCTGGGTCTCTCTCTATTTTCTCTGTTGGCTGTTTGTTGTGTTTGAAG
GAAGAATGGTCGTTAACAAATAATGTGAAGGACTGGCTTGTAAAACACAT
GGCCCAGACCAAGGCGGGTACATCCTAATCGTCCGTCCGTCCGTCCGTTC
AGCAGCGTACCGCTGTGTGTGAATACCACAACAGCAGCGTACCGCGTGAC
GTTGTGTTTGAATATTTCCCACATCTTCCTTTCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTCGTTGCTGTGGGATGCTCGTTGAAATTCAGGTGGGGGGC
GATGATGAGCTTTTGAGGGTGATCACCTCAGAGGTGACTGAGAGACTGCA
GGCTGAGAAGCCTTACCTTACTCGGTCGTTCTACGCCCACGTGCGGGGAC
TTCGGCGTTTCTTCGCCAAGGTGAGCGGAAAAACCATAGATGGAGAGGAC
GAAAAAATTGAAAAAGTTCTTCATTTTTTGTCATGATGTGCGCGGAGGAA
ATGAATCGGAGACAACGACCGTGTTTTTGAAATCCACTGACTGCTGTATA
TGTAGCATATGCGTGCCGCGTTGTCAGCTATCCCGACTGTAGCAAGATCA
CCATCTCTTGGGGGCAGTCTTGTGTGTTTATCGTCACTTCCTTCTTTTCT
CGCACCCTTGGCCTGATGTCATACGTATGATGTGCATCCGTAGAGTAACC
TTCCTTGTGTTCTGGCTACCGAATGTATTCGGAGAGTTTCTGCTGCTGCT
GTGGTGAGCTGGCCCATCGGATAG
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Coding sequence (CDS) from alignment at chr_00:3549216..3550889+

>Ec-00_003580.1 ID=Ec-00_003580.1|Name=Ec-00_003580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=603bp|location=Sequence derived from alignment at chr_00:3549216..3550889+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGGCACTGTACGCGGCCCTTCTCCTCCTCCTCCTCGTGACCGGGGC
ATGCGGGAAGAAGGCGAGCACACCCCAGCAGGAAGCGTGTTGCGCGGCGC
TCTTGTTGGAGGGTCCCGTAGGGTCCAAGGGTCACGACGGGAAGTACCAG
CTACCCGTTGCGTGCCGTGACCTGGTCGGCTGCCCGAGCCTTGGGTTCAA
TCCCCAAGCACACATCGACATCGACCCGGCGAGCGAGGCCCTCCGCCAGC
AGTCCGCCCTGCGCGAGGACTCCTCGTGTCCGCGCGCCGAGTGGGAGGGC
AGGTGCCCGCCCTCCTCCACCATGCTCCTGGCGAGCAGGATGGGGGGATC
CTGCATCGCTGCGGGATGTGTCCACCGCGAGACCCAGTCGATGGTGGGGG
GCGATGATGAGCTTTTGAGGGTGATCACCTCAGAGGTGACTGAGAGACTG
CAGGCTGAGAAGCCTTACCTTACTCGGTCGTTCTACGCCCACGTGCGGGG
ACTTCGGCGTTTCTTCGCCAAGAGTAACCTTCCTTGTGTTCTGGCTACCG
AATGTATTCGGAGAGTTTCTGCTGCTGCTGTGGTGAGCTGGCCCATCGGA
TAG
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Synonyms
The feature 'Ec-00_003580.1' has the following synonyms
Synonym
Esi0217_0044
Esi_0217_0044