Ec-00_003570.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003570.1
Unique NameEc-00_003570.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length59
Homology
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BLAST of Ec-00_003570.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.920e-16
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 MSDGEEYEYDYEDXXXXXXGSDNDGEAADDLIEIENAFYEGD-AQKKNPQKGLDCSRR 171
            MSDGEEYEYDYEDXXXXXXGSDNDGEAADDLIEIENAFYEGD A+++NPQ+ L+  ++
Sbjct:    1 MSDGEEYEYDYEDXXXXXXGSDNDGEAADDLIEIENAFYEGDDARQENPQRALELFQK 58
The following BLAST results are available for this feature:
BLAST of Ec-00_003570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKQ1_9PHAE4.920e-1681.03COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3542003..3545060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length177
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_003570.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003570Ec-00_003570Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3542003..3545060 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003570.1.4Ec-00_003570.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3542003..3542021 -
Ec-00_003570.1.3Ec-00_003570.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3542156..3542186 -
Ec-00_003570.1.2Ec-00_003570.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3543496..3543606 -
Ec-00_003570.1.1Ec-00_003570.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3545045..3545060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003570.1CDS:Ec-00_003570.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3542003..3542021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003570.1Ec-00_003570.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3542003..3545060 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003570.1 ID=Ec-00_003570.1|Name=Ec-00_003570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=59bp
MSDGEEYEYDYEDGEEYDYGSDNDGEAADDLIEIENAFYEGDAQKKNPQK
GLDCSRRW*
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spliced messenger RNA

>Ec-00_003570.1 ID=Ec-00_003570.1|Name=Ec-00_003570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=177bp|location=Sequence derived from alignment at chr_00:3542003..3545060- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACGGGGAAGAGTACGAGTACGACTATGAGGATGGCGAGGAGTA
CGACTATGGCAGCGACAACGATGGGGAGGCGGCGGACGACCTCATCGAGA
TAGAAAACGCCTTCTACGAGGGGGACGCCCAAAAAAAAAACCCCCAAAAG
GGTTTGGACTGTTCCAGAAGGTGGTGA
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protein sequence of Ec-00_003570.1

>Ec-00_003570.1 ID=Ec-00_003570.1|Name=Ec-00_003570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=59bp
MSDGEEYEYDYEDGEEYDYGSDNDGEAADDLIEIENAFYEGDAQKKNPQK
GLDCSRRW*
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mRNA from alignment at chr_00:3542003..3545060-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003570.1 ID=Ec-00_003570.1|Name=Ec-00_003570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3058bp|location=Sequence derived from alignment at chr_00:3542003..3545060- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTGACGGGGAAGGTAAGGCCTGGTTGCTTTCTGCGCCCTGATAGGG
TGAACTCGACGGCTGCTGGAATGGAAGTACCACCAAGTTTTTTTTTGCGC
AATCCTTAAGTCTCTATTGTTGTGCCCCCTCGGCTGTCTCTCTCCGTCTT
CATGATTCCTCTGGCAGTGTGTGTACCGCGAGTGTTGCAGTAGCCGTGTG
TGCGGTAGGGGCGGTCCATGCAACCTATGGTGAATGGAATGGCGAGGGTA
TTTCGCCGTTGAGGAATGCAACCGTCCAGTCCCTCTTGAAACGCGCGGGA
AGGCACAAACGACCGCCTTGCACACAGCAGCACAGCAGCAGCGGTGACCT
GTGTTCGAGGCACCGAGACGTACTATTTATAATACTGCTGTACGAAGGCT
CGAATTAGAGAGAGTACAGCAGATATTCACAGCAGGACCCAACTTCGCTG
GTGAACTTGCTACACTGCTGTACGCTCTCCTCGAGAGCGTAGCGCACAGC
GGCGCATCACCAGCCACGAGGGCCAGCTACTGTATATTATGCTGCACCTG
CCGCGTCTTGTTTTGCAGCCGCCGCTTGCATTTGAGCCTACAATATCGCG
TGCCCCCGGTTGTTGATGCTTTGTGGTCGGGGGAAGGAGTCCGTCTGGCG
GTCCATGACACGTTTCACTGCCACATCTTGCCGAGCTCAAACTTGTTGGG
AACCCATCGTTCGTAAGGCCTGTTTCATCATCTTCGGCTCATAGAATATT
GGTGGACATTCATCCCACTGGCTGGTTGATCCGGCAGGCTATGTGCGTGC
TTGCTGGCATATTGGACAGTCGACTACGTTCGTGGTCAGTGATCTCCTCT
CCGCTCGACCAGTTCAGGTTTAAAACGATTCCGCGGTTCTCATTAATTTG
GTTTCGTTTAGTTATCGGGACCCTTTGGTGTGTGCTCGTGATTGTACTGT
ATTATGTACCTGGTGGAGTGTTTCACTGCGGTGTTTTCCGTACGGTAGAT
ACCACCTAGAGGACGGGGGGGAGGTATACCCAGCTGCTGCCGAAGCTTGC
CCATCAAAACCCCAGAGTGTACTTGGCAGGATACGAACCTCCGAGATCTC
CGGGGGGCTCTGCTTGCCTGCCCATGTCTCACTCCTCTTTATCTTTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAT
TATATTCAAGGAACTTGAGTCACTCCTTTGTGCGAAACACTCTCGACGAG
AGCCCGCGAGAGTGATGACGCAGTACACGCGCCGACACCCCAAACATCGT
GTGTATTGGCCAGATCTGTGTTCAGTTCATTGCTCGCTCTGCCGCTACAA
CTTCGGGTGCGTTGCGCGTAACGGTACCCGCTGGACGCTGTTGCTCGCTG
GACGCTGTCGCCGTTGCTCTGCGCCCGTGGCTGTTTTGTTTTTCTGTTTC
CCAGAGTACGAGTACGACTATGAGGATGGCGAGGAGTACGACTATGGCAG
CGACAACGATGGGGAGGCGGCGGACGACCTCATCGAGATAGAAAACGCCT
TCTACGAGGGGGACGGTGAGTTAAAGTTGCTGCTCACGTTTCTCGGGGGG
GGGAGAGTGCAAGCGATGGAGAGGGAGAGAGAGCCAGTGAGAACCAACAC
AGAGAGAGAGAGAGAGAGAGAAAAGAAAGAAAAAGAGGGGGGGCGCACAG
TTTTCTTACGCTCGCCCTTGCCGTTCTTGACGAGCAGCAACTTGTGGTAT
CTGCGAGCACCACGTTTTGGCTTGTTGGCCTTGGTTTTCCCCTGTGTGTT
TTCGGCGCGCGCTTTAGACAAACCTCCTACATAGCCTCAACAAAATGTGC
GAAGGCCCTATTGTGCCACAAGAAGAGGCAGTGATTCTACAACAGATACA
GGCGAGGAAGGGGAGGTAGCATAAGAAGAATCAATCTGTAGCTCTGTTTT
TTTGCCCCTCCCTCAAGTCAATCTGGCGTCAGTTGCCTCCCTGCCAATGC
AATTTTCGGGCAGTGGCCCCGCGCTGTTTTCATTTCCCGACTCTTGCAGC
ACGTCCTGCAGTACCCACCTTCCACAGGAATCGGCTTTCTCGAGCGAGAA
GCTCTCTCCCCTCCGATACATGTCCAACTCCATGAGGAAGTTTTCTCACC
CATGTTTTTTCTCGCGTTCACGCAATAGCCTTTTCAGCACCCGCAAAAAG
GCGGGATTCACGGGTTTGTCGAGTTGTTCCTTGTTCCCTTTTCGTGCCCC
CCCCCCCCGCCCCCCGGTGTTTGCGATCGGGGTTTGGGTTTTCGTCGCTT
GGCAACGACGTTGTAAAACAAGCCCCCCACTCGGTGTTTGCCATCGGGGT
TGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACTTC
GTGAACTCGGCAACCAGGTTACCGTTTTTTTTTTTTTACCTCGTTTTTTT
TTTTTGGCGGTAACCATAATGGTGGTCGAGTAGATCATGTTGTGCGGGGT
CGAGAAACCTCACTCCGCGCAAAGGTGGATGATCGCACCACGTTGTGTTA
AAATGGTCAAGCTTCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCT
GGAAGTGAAAGCACCAGAAAATAAATTAAGTCATACGTAGCTGTCATCCG
TACGCAAGGAAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGC
TCACCCTTCATGCGACTCGCCGAATACCTGACGGCGCTTCGCGCTTGGTG
ATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTG
TAGGGATGCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAG
TACACCCCCCCCCCCCCCCCAAAGCCCAAAAAAAAAACCCCCAAAAGGGT
TTGGAGCTGTTCCCAAAAGGGGGGACCCTGGAGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGCTGTTCCAGAA
GGTGGTGA
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Coding sequence (CDS) from alignment at chr_00:3542003..3545060-

>Ec-00_003570.1 ID=Ec-00_003570.1|Name=Ec-00_003570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=177bp|location=Sequence derived from alignment at chr_00:3542003..3545060- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTGACGGGGAAGAGTACGAGTACGACTATGAGGATGGCGAGGAGTA
CGACTATGGCAGCGACAACGATGGGGAGGCGGCGGACGACCTCATCGAGA
TAGAAAACGCCTTCTACGAGGGGGACGCCCAAAAAAAAAACCCCCAAAAG
GGTTTGGACTGTTCCAGAAGGTGGTGA
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Synonyms
The feature 'Ec-00_003570.1' has the following synonyms
Synonym
Esi217_0052
Esi_217_0052