Ec-00_003530.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003530.2
Unique NameEc-00_003530.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length105
Homology
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BLAST of Ec-00_003530.2 vs. uniprot
Match: A0A6H5JHA5_9PHAE (BPL/LPL catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA5_9PHAE)

HSP 1 Score: 404 bits (1038), Expect = 1.180e-130
Identity = 309/516 (59.88%), Postives = 328/516 (63.57%), Query Frame = 3 
Query:    3 KAASLTPTARGSSVAALGSAGASLAVASGRSLRSFTPSGSGRKWQHSSRRGSSERLNGSVGSSCGDGWNNRSVAGGGXXXXXARGALSSLAPAVAPRAGTSALFVVSSVDPAVSLATTPEATLAGSAAAGAEGSVFAAERARCSRWCEQPPFGSTLPSPA---------------GPSSFSHHTQISGLQPIIFGC*HG---VSRYDRNEVRGRRGRRGRGHGIEVHVAGVRQLHHGRSQNPHRQSRGSDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRVPVPLSLIPLRVGTLIAPRYNGDFQGIAKKSGPRFLRLHLRPRLPEKRGRRXXXXXXXXXXXXXXXXXXXXRLGCRSSGRTTSFS-------AAPRSPEC*SRRSYPFCSSESA*TSETSRRCPRMVPTVAGPLLALPTSGRTAPMSGERAVRGA-DRKACSWASGTDSASTAVAEWSRWVDWSLPLEIRDEGRAVRPIGVAPDGRLRVVDPATGEEELLTTEYLL 1472
            KAASLTPTARGSSVA LGSAGASLAVAS RSLRSFTPSGSGRKWQ SSRRGSSERLNGSVG SCGDGWN RSVAGGGXXXXXARGALSSLAPAVAPRAGTSALFVVSSVDPAVSLATTPEATLAGSAAAGAEGSV AAERARC       P    +  P+               GPSS S  T  +    +  G       +SR+   E             +   +  V+ L   +         GSDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRVPVPLSLIPLRVGTLIAP          ++  P    L+  P         XXXXXXXXXXXXXXXXXXXX           S            +          PF               P+  P    P   L   G  +     R +  A   K CSWASGTDSASTAVAEWSRWVDWSLPLEIRDEGRAVRP+GVAPDGRLRV+DPATGEEELL TEYLL
Sbjct:   68 KAASLTPTARGSSVAVLGSAGASLAVASRRSLRSFTPSGSGRKWQLSSRRGSSERLNGSVGKSCGDGWNKRSVAGGGXXXXXARGALSSLAPAVAPRAGTSALFVVSSVDPAVSLATTPEATLAGSAAAGAEGSVVAAERARCRPLVRTTPLRFNVAKPSRTEIFLAPSANIRTPGPSSSSADTGSADTTEMRCGGXXXXGMISRFTWLES------------VNSTMDEVKTLIINQE--------GSDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRVPVPLSLIPLRVGTLIAPEIQRRLPRHRQEERPP---LYPPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRVSLKWPNDVLLGGSKVAGVLIEAELPFLLVGIGVNVRNKPEVPQNGPDRGRPATCLADFGADSTDEAVRELSAALTEKLCSWASGTDSASTAVAEWSRWVDWSLPLEIRDEGRAVRPVGVAPDGRLRVMDPATGEEELLATEYLL 560
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BLAST of Ec-00_003530.2 vs. uniprot
Match: D7FRR2_ECTSI (BPL/LPL catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR2_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.420e-63
Identity = 159/270 (58.89%), Postives = 166/270 (61.48%), Query Frame = 3 
Query:  690 GSDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRVPVPLSLIPLRVGTLIAPRYNGDFQGIAKKSGPRFLRLHLRPRLPEK------RGRRXXXXXXXXXXXXXXXXXXXXRLGCRSSGRTTS--FSAAPRSPEC*SRRSYPFCSSESA*TSETSRRCPRMVPTVAGPLLALPTSGRTAPMSGERAVRGA-DRKACSWASGTDSASTAVAEWSRWVDWSLPLEIRDEGRAVRPIGVAPDGRLRVVDPATGEEELLTTEYLL 1472
            GSDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRVPVPLSLIPLRVGTLIAP              PR  +    P  P        R  R      XXXXXXXXXXXXXX    R S +  +       +          PF               P+  P    P   L   G  +     R +  A   K CSWASGTDSASTAVAEWSRWVDWSLPLEIRDEGRAVRPIGVAPDGRLRVVDPATGEEELLTTEYLL
Sbjct:   40 GSDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRVPVPLSLIPLRVGTLIAPEIQRRL--------PRHRQEERPPLSPPXXXXXXXREARTAEAAEXXXXXXXXXXXXXXXXXPRVSLKWPNDVLLGGSKVAGVLIEAELPFLLVGIGVNVRNKPEVPQNGPDRGRPAACLADFGADSTDEAVRELSAALTEKLCSWASGTDSASTAVAEWSRWVDWSLPLEIRDEGRAVRPIGVAPDGRLRVVDPATGEEELLTTEYLL 301
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BLAST of Ec-00_003530.2 vs. uniprot
Match: A0A7S1ZSF1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZSF1_TRICV)

HSP 1 Score: 86.3 bits (212), Expect = 4.630e-15
Identity = 74/271 (27.31%), Postives = 118/271 (43.54%), Query Frame = 3 
Query:  684 SRGSDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRV-PVPLSLIPLRVGTLIAPRYNGDFQGIAKKSGPRFLRLHLRPRLPE----KRGRRXXXXXXXXXXXXXXXXXXXXRLGCRSSGRTTSFSAAPRSPEC*SRRSYPFCSSESA*TSETSRRCPRMVPTVAGPLLALPTSGRTAPMSGERAVRGADRKACSWASGTD-SASTAVAEWSRWVDWSLPLEIRD--EGRAVRPIGVAPDGRLRVVDPATGEEELLTTEYLL 1472
            ++G D+   FAV+A EQ  GRGTKGR WIG PGN F+T+ +P D + P+P++L+PL++GT++A   +  F+ +            +R + P       G+                      +G   +   T +   P+      R     C SE                   G  +    +  +  ++ + A      +  +WA+  D +A   V EW  W D+     +RD  E   V P+ + PDGRL+V   A G+ +LL T+YLL
Sbjct:   35 NKGDDSPDCFAVSANEQNHGRGTKGRDWIGRPGNCFVTICLPCDLITPLPVTLLPLKIGTIVATHIDRAFRSVGVHGA------RVRVKWPNDVLINDGKVAGALIESHCNPETLRSWYLIGIGVNVAHAPTIYQFGPQ------RGRQATCLSEH------------------GSFVKGDGTNDSRTLAADLA-----EEVHAWATEGDMTAEGVVREWEAWADFGREQVLRDKPENEVVVPLAIEPDGRLKVRG-ADGKIQLLCTDYLL 269
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BLAST of Ec-00_003530.2 vs. uniprot
Match: F0Y9I2_AURAN (Uncharacterized protein BPL2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9I2_AURAN)

HSP 1 Score: 86.3 bits (212), Expect = 5.130e-15
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 2 
Query: 1040 VSLKWPNDVLLGGSKVAGVLIEAELPFLLVGIGVNVRNKPEVPQNGPDRGRPAACLADFGADSTD 1234
            VSLKWPNDVLL G KV GVLIEA+   LLVG+G+NV   P+VPQ GP+RGR A  LA  GA S D
Sbjct:  133 VSLKWPNDVLLNGKKVCGVLIEADGDALLVGVGINVATHPDVPQAGPERGREATSLAACGATSAD 197
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BLAST of Ec-00_003530.2 vs. uniprot
Match: A0A7S1GL90_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GL90_CYCTE)

HSP 1 Score: 83.2 bits (204), Expect = 9.380e-14
Identity = 71/264 (26.89%), Postives = 113/264 (42.80%), Query Frame = 3 
Query:  690 GSDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRVPVPLSLIPLRVGTLIAPRYNGDFQGIA---KKSGPRFLRLHLRPRLPEKRGRRXXXXXXXXXXXXXXXXXXXXRLGCRSSGRTTSFSAAPRSPEC*SRRSYPFCSSESA*TSETSRRCPRMVPTVAGPLLALPTSGRTAPMSGERAVRGADRKACSWASGTD-SASTAVAEWSRWVDWSLPLEIRDEGRAVRPIGVAPDGRLRVVDPATGEEELLTTEYL 1469
            G++   ++ V    Q  GRGT GR WI   GNVFLT+A+P+  +PVP++L+PL++G L+A R +  +  +    ++ G   L+       P  +                        +     G   +    P+ P     +  P    +   + +                + LP S      S + AV         W   +D SA    +EW RW +W+ PL+IR+ G AV P+ +  DGRLRV +  +G+E LL  +YL
Sbjct:   75 GAEDDHLWVVTTDNQTHGRGTTGRTWISRKGNVFLTIAVPMTSIPVPITLLPLQMGVLVAERLDKIYHQLKPDDEEDGSERLQ-------PTVKWPNDVLFNDEKIAGILIESHVVENVTWLLVGIGVNLLQTPQVPTEGPDKGRPATCLQHYVSHD----------------VLLPESLAEV-FSHDLAVAFEQ-----WLDDSDVSAEQVRSEWKRWANWAKPLQIRETGEAVFPMDIEADGRLRVKE-MSGKERLLVADYL 308
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BLAST of Ec-00_003530.2 vs. uniprot
Match: A0A7R9UD02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD02_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.390e-12
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 2 
Query: 1040 VSLKWPNDVLLGGSKVAGVLIEAELPFLLVGIGVNVRNKPEVPQNGPDRGRPAACLADFGADSTDE 1237
            V+LKWPNDVL+ G KV+GVLIE ELPFLL+G+G+NV   P +P +G D GR A  + +  A+   E
Sbjct:  148 VTLKWPNDVLIDGKKVSGVLIETELPFLLIGVGINVVEAPVIPDSGADAGRAATAIVEQVANVDTE 213
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BLAST of Ec-00_003530.2 vs. uniprot
Match: A0A7S0GLW3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLW3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.740e-12
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 3 
Query:  711 FAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRVPVPLSLIPLRVGTLIA 869
            FA++  EQ +GRGT GR WI   GN FLTVAIP+D VPVPL+L+PL+VG++IA
Sbjct:   11 FAISTSEQKKGRGTSGRVWISSKGNSFLTVAIPMDSVPVPLTLLPLKVGSIIA 63
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BLAST of Ec-00_003530.2 vs. uniprot
Match: A0A7S1BNJ6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNJ6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.250e-11
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 2 
Query: 1037 RVSLKWPNDVLLGGSKVAGVLIEAELP------FLLVGIGVNVRNKPEVPQNGPDRGRPAACLADFGADSTDE 1237
            +V+LKWPNDVL+   K+AGVLIE E        + L+GIGVNV + PE+P  G +RGRPA CL D      DE
Sbjct:  200 KVTLKWPNDVLIDDKKIAGVLIENEYQKNYNDGWFLIGIGVNVASAPEIPNVGEERGRPATCLGDHMEGGLDE 272
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BLAST of Ec-00_003530.2 vs. uniprot
Match: A0A8J2WZ73_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ73_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.270e-11
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 2 
Query: 1037 RVSLKWPNDVLLGGSKVAGVLIEAELPFLLVGIGVNVRNKPEVPQNGPDRGRPAACL 1207
            R+SLKWPNDVLL G KVAG+L+E++   + VG+GVNV + P VP  GPDRGR AA +
Sbjct:  122 RLSLKWPNDVLLEGGKVAGILVESDGNAIYVGVGVNVASAPAVPSAGPDRGRRAAKI 178
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BLAST of Ec-00_003530.2 vs. uniprot
Match: A0A7S2U6B7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6B7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.290e-10
Identity = 74/271 (27.31%), Postives = 108/271 (39.85%), Query Frame = 3 
Query:  693 SDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIPLDRVPV-PLSLIPLRVGTLIAPRYNGDFQGIAKKS-GPRFLRLHLR-PRLPEKRGRRXXXXXXXXXXXXXXXXXXXXRLGCRSSGRTTSFSAAP---RSPEC*SRRSYPFCSSESA*TSETSRRCPRMVPTVAGPLLALPTSGRTAPMSGERAVRGADRKACSWASGT----DSASTAVAEWSRWVDWSLPLEIRDEG--RAVRPIGVAPDGRLRVVDPATGEEELLTTEYL 1469
            S A   FAV A EQ RGRGT GR+WIG  GNVFLTV I  + VP+ P++L+PL++G L+A   +   Q     S G     + ++ P      G++                     +G   +      S  P   R   C       +C S +  T   +  C  +   +A  +                          +W   +    +++   V EW  W +    L +RD+     V P+G+ PDGRLRV D   G E  L  +YL
Sbjct:  119 SSAHDNFAVLATEQTRGRGTCGRSWIGRKGNVFLTVGIKSEEVPIHPITLVPLKMGVLVARAIHDRIQNSGNSSSGKGTCAVTVKWPNDVLVDGKKVAGILIENFIHDNQVWFLVG-IGINVAEAPAIDSQGPEGGRPSAC----ILDYCGSSA--TINATEECNALATQIANSVH-------------------------TWVQNSTGQYETSRDVVKEWEEWAELGKELFLRDDASREPVIPLGIEPDGRLRVRD-RNGRERFLVADYL 356
The following BLAST results are available for this feature:
BLAST of Ec-00_003530.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHA5_9PHAE1.180e-13059.88BPL/LPL catalytic domain-containing protein n=1 Ta... [more]
D7FRR2_ECTSI1.420e-6358.89BPL/LPL catalytic domain-containing protein n=1 Ta... [more]
A0A7S1ZSF1_TRICV4.630e-1527.31Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
F0Y9I2_AURAN5.130e-1566.15Uncharacterized protein BPL2 n=1 Tax=Aureococcus a... [more]
A0A7S1GL90_CYCTE9.380e-1426.89Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7R9UD02_9STRA1.390e-1254.55Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S0GLW3_9STRA7.740e-1264.15Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1BNJ6_9STRA4.250e-1152.05Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A8J2WZ73_9STRA4.270e-1161.40Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2U6B7_9STRA4.290e-1027.31Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3511304..3515368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1888
Hectar predicted targeting categoryother localisation
Gene idEc-00_003530.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003530Ec-00_003530Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3511297..3515567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003530.2Ec-00_003530.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3511598..3511912 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003530.2.6Ec-00_003530.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3511304..3511950 -
Ec-00_003530.2.5Ec-00_003530.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3512298..3512662 -
Ec-00_003530.2.4Ec-00_003530.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3513185..3513368 -
Ec-00_003530.2.3Ec-00_003530.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3513732..3513895 -
Ec-00_003530.2.2Ec-00_003530.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3514244..3514338 -
Ec-00_003530.2.1Ec-00_003530.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3514936..3515368 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0035303UTR:Ec-00_003530.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3511304..3511597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003530.2CDS:Ec-00_003530.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3511598..3511912 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0035305UTR:Ec-00_003530.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3511913..3511950 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003530.2 ID=Ec-00_003530.2|Name=Ec-00_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=105bp
MLLGLRDGFGVHRRGRVVPVGGLVPAAGDQGRGAGGEAHRSRAGRAATGG
GPGNGRGGTTHHGVPPLDREGIVSLVYLLFDRAQPFFVLLRNSHNGDCCM
ATGE*
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spliced messenger RNA

>Ec-00_003530.2 ID=Ec-00_003530.2|Name=Ec-00_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1888bp|location=Sequence derived from alignment at chr_00:3511304..3515368- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TGAAGGCAGCATCGCTCACACCAACAGCAAGAGGATCATCGGTAGCTGCA
CTTGGTTCCGCAGGGGCTTCGTTGGCAGTAGCAAGCGGAAGAAGCCTCCG
GAGCTTCACACCGAGCGGTAGCGGTCGGAAGTGGCAACACAGCAGCCGCC
GCGGCAGTAGCGAGCGGTTGAACGGGAGTGTCGGCAGCAGTTGCGGTGAC
GGCTGGAACAACAGGAGCGTAGCTGGTGGTGGTGGCGGCGGCGGCGGGGC
ACGGGGAGCTCTGTCGTCCCTTGCCCCTGCGGTCGCTCCGCGTGCTGGCA
CAAGTGCACTGTTCGTTGTTTCTTCCGTCGACCCCGCTGTTTCTCTCGCC
ACCACACCCGAGGCAACACTGGCAGGGAGTGCTGCTGCAGGCGCGGAAGG
ATCTGTCTTTGCGGCTGAACGCGCTCGTTGCAGGCCGTTGGTGCGAACAA
CCCCCCTTCGGTTCAACGTTGCCAAGCCCAGCAGGACCGAGCTCTTTCTC
GCACCACACGCAAATATCCGGGCTCCAGGCCCATCATATTCGGCTGCTGA
CACGGGGTCAGCAGATACGACCGAAATGAGGTGCGGGGGCGGCGGGGGCG
GCGGGGGCGGGGGCATGGTATCGAGGTTCACGTGGCTGGAGTCCGTCAAC
TCCACCATGGACGAAGTCAAAACCCTCATCGTCAATCAAGAGGGAAGCGA
CGCGAAACGCGTGTTTGCTGTGGCAGCGAGAGAACAGCTTCGCGGGAGAG
GGACGAAGGGTCGGGCTTGGATAGGCCTCCCTGGAAACGTTTTTCTCACT
GTGGCCATTCCGCTAGACAGGGTCCCCGTACCGCTGAGCCTTATTCCTCT
TAGGGTCGGCACACTAATAGCGCCAGAGATACAACGGCGACTTCCAAGGC
ATCGCCAAGAAGAGCGGCCCCCGCTTTCTCCGCCTCCATCTCCGTCCGCG
TCTCCCCGAGAAGCGAGGACGGCGGAGGCAGCGGAACCCGAACCGGAACC
GAAACCGGAACCGGAACCGAAACCGGAACCGGAACCGCCTCGGGTGTCGC
TCAAGTGGCCGAACGACGTCCTTCTCGGCGGCTCCAAGGTCGCCGGAGTG
CTGATCGAGGCGGAGCTACCCTTTCTGCTCGTCGGAATCGGCGTGAACGT
CAGAAACAAGCCGGAGGTGCCCCAGAATGGTCCCGACCGTGGCAGGCCCG
CTGCTTGCCTTGCCGACTTCGGGGCGGACAGCACCGATGAGGCGGTGAGA
GAGCTGTCCGCGGCGCTGACCGAAAAGCTATGCTCCTGGGCCTCCGGGAC
GGATTCGGCGTCCACCGCCGTGGCCGAGTGGTCCCGGTGGGTGGACTGGT
CCCTGCCGCTGGAGATCAGGGACGAGGGGCGGGCGGTGAGGCCCATCGGA
GTCGCGCCGGACGGGCGGCTACGGGTGGTGGACCCGGCAACGGGCGAGGA
GGAACTACTCACCACGGAGTACCTCCTTTAGACCGCGAGGGCATTGTTTC
GCTGGTGTACCTTCTTTTTGACCGCGCGCAGCCTTTTTTCGTCTTGTTGA
GAAACTCTCACAACGGCGATTGTTGTATGGCTACCGGGGAATAAATCTGT
TTTTTTTTCAACAGAGGAGGAGGGGATGAGTACAAGAAGCTGTTCGCCTA
GTCTCCGCCGAGACTCTCCCCACACTATTTTCGATAACGGGGCACCCAAT
TTGAGTTGCATCCACACATCTTTGCTTTGTTGTGAAGATTTCGTGTCTCC
GTGCTCTACCAGCTCTGTCTTGAGACCTTTCGGCAAGGCCACTTGGTAGA
GGTATGGCATTTTTTAGGGTGTTCCATGGATCACGAAAACCACTTTTCGG
CAAGACCAGTCTGTTGTCGTGAGACCCCGATTTATGGG
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protein sequence of Ec-00_003530.2

>Ec-00_003530.2 ID=Ec-00_003530.2|Name=Ec-00_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=105bp
MLLGLRDGFGVHRRGRVVPVGGLVPAAGDQGRGAGGEAHRSRAGRAATGG
GPGNGRGGTTHHGVPPLDREGIVSLVYLLFDRAQPFFVLLRNSHNGDCCM
ATGE*
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mRNA from alignment at chr_00:3511304..3515368-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003530.2 ID=Ec-00_003530.2|Name=Ec-00_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4065bp|location=Sequence derived from alignment at chr_00:3511304..3515368- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TGAAGGCAGCATCGCTCACACCAACAGCAAGAGGATCATCGGTAGCTGCA
CTTGGTTCCGCAGGGGCTTCGTTGGCAGTAGCAAGCGGAAGAAGCCTCCG
GAGCTTCACACCGAGCGGTAGCGGTCGGAAGTGGCAACACAGCAGCCGCC
GCGGCAGTAGCGAGCGGTTGAACGGGAGTGTCGGCAGCAGTTGCGGTGAC
GGCTGGAACAACAGGAGCGTAGCTGGTGGTGGTGGCGGCGGCGGCGGGGC
ACGGGGAGCTCTGTCGTCCCTTGCCCCTGCGGTCGCTCCGCGTGCTGGCA
CAAGTGCACTGTTCGTTGTTTCTTCCGTCGACCCCGCTGTTTCTCTCGCC
ACCACACCCGAGGCAACACTGGCAGGGAGTGCTGCTGCAGGCGCGGAAGG
ATCTGTCTTTGCGGCTGAACGCGCTCGTTGCAGGTGTGCTGTGAGAGGGA
AGGGCCGAGTACCTTGATTGTGGTTGAGACTGTGGATGACGTTGACTTTG
TGCCACTTGATGGGCGTGCCTGTTGCGAAGGTCAATGTTAATCGATTGAT
TCGTGAAAAAGAGTCGGCACGCAGTAGATGCAATCGTCGTCCACAAGCAG
TATCGCATCAGCCTGCTGAGTATCGGTACTCGCTTTTATCATATTGTTTT
TGGTGGCCAGATCAACCACAATTCCAAGCCACCCTCTCTCTTATCTAATC
AAGTAATGGCAGCTGCATTCTAGTCACTTTGCTGCTCTTCATTGTCGACA
GACGTTTGCCATGCTCTACATAAGTGGAAAATACGCTTGGAGTTCCTAGT
CTCGACGACGAAAAACATCAAACTCGCCCCAGCTCTCTCCGCGACAAGAG
TATCCACGGCAACGCAAAATGAAAATAGACGCGTGTTGTACTTCGTTCTA
GACATAAGCAACAAAACATGGCTGATAGACTTGCGTTGTACCGGTACCAG
CAACACTGCCAGAACGGTTCAAACTTTTGCCCACCAAGCGCCCTGTTCAT
GGTCACGCCTTTTCGCCCAACCATTGCCAGGCCGTTGGTGCGAACAACCC
CCCTTCGGTTCAACGTTGCCAAGCCCAGCAGGACCGAGCTCTTTCTCGCA
CCACACGCAAATATCCGGGCTCCAGGTAAGCTCTTGCGGTCCGGCCCCGC
AGAAATGTCCTCATCGTACAGCCCTGCCTACAACACCGCATCACACAGCA
CCGCGTACAGCTGAAGCAAGTACGTACCTAAGGCGTTGCTTGTCACCGAA
AGTGTGTGTGTTTTTTGTTCTGCATACATCACGTATGGGCTCACAGCTGT
CTGGTCAACTTGTCTCCCCTCGCCCATCAAGCAAAACAAAGCGTTTCAGC
CATTGCAAGCGACCAATGTGCCGTGCTCGGTCTCGAACGGTCGTAGGGTA
CTTCTTCCAATGTGCAAGGGAGCAAATACTTGATATCCCCTCCTTGACAA
TTTGTTGGAACCTCGCACTGTAGGCCCATCATATTCGGCTGCTGACACGG
GGTCAGCAGATACGACCGAAATGAGGTGCGGGGGCGGCGGGGGCGGCGGG
GGCGGGGGCATGGTATCGAGGTTCACGTGGCTGGAGTCCGTCAACTCCAC
CATGGACGAAGTCAAAACCCTCATCGTCAATCAAGAGGTATTTCCGGAGG
GAGGGCATATCTGGAGACTAAGAGCACGGCTCGTAGGAATCGAAGATTCC
CCGCTTGCAAATGTTGTGCCATGCCCTTGTCTGCTATTCTTTTGGGGGTG
TGATGCTTGGCCGATGCACAACCGGTTGTGTGAAACACGCCGCATGTCGC
GCATACGTACATCCGTTCCCAGCGCGTATCTCACCCTTTTGGATGTTCAC
CAAACGAGATATATCACGCTCTGTTTAATATCGTGACGAGGCATCACGCT
CCGTTTAGTATCGTAGTCGCCGCGCAAAACCGGCAGTCATGGGCTTGATG
ATTATTTCTCGAACGGCGCAACCCCGCCCACCGTGCCGTGTGGCTGTTAG
GGAAGCGACGCGAAACGCGTGTTTGCTGTGGCAGCGAGAGAACAGCTTCG
CGGGAGAGGGACGAAGGGTCGGGCTTGGATAGGCCTCCCTGGAAACGTTT
TTCTCACTGTGGCCATTCCGCTAGACAGGGTCCCCGTACCGCTGAGCCTT
ATTCCTCTTAGGGTCGGCACACTAATAGCGCCAGGTGAGCATGGAAGGTA
CTTCGAGAGACGGAGAGAGGACGCGAGGTGCTTTGCTGTAAATTTCACCT
CGTGCAAAATCTCCCCCTGCAAGCAGCACCCCGAGAAATGACCATGTCAC
CGTTTTCAGACTAGAGTAGAGTGTTGGCTTGTGAGGCTTGGGGGTGATGC
CTTTGGATTCGCTCGCGGTTGTCAAACGCCTGTGTGGGATGGTGCTTCTT
CGTCTGTCCCGATTACTTGTTCGTCCTCGTACACGGTTCTCGAGCATTGA
CCACCACCACGTTCACCATTGCAATCATTGCATCGCCTACCGGCTGGCGA
CCATCTCGCCCATTCCCGGAAGCGCCCCTCTTCCTGATCCCGTTCGACCG
CACCGGATCTCGAGAGAAGAATATCATCTCGAGTAACGTCGGCCCGTCTC
TCCCCCCCTAGCGTGCTCTCGTGACGATCCTTCCCAGCTCTACCTTTCCT
CGGCCTTGTTTGAGTTCGATCCTCCCCGATGCTGCCACCCCTTCCTCCTG
GCGCAGAGATACAACGGCGACTTCCAAGGCATCGCCAAGAAGAGCGGCCC
CCGCTTTCTCCGCCTCCATCTCCGTCCGCGTCTCCCCGAGAAGCGAGGAC
GGCGGAGGCAGCGGAACCCGAACCGGAACCGAAACCGGAACCGGAACCGA
AACCGGAACCGGAACCGCCTCGGGTGTCGCTCAAGTGGCCGAACGACGTC
CTTCTCGGCGGCTCCAAGGTCGCCGGAGTGCTGATCGAGGCGGAGCTACC
CTTTCTGCTCGTCGGAATCGGCGTGAACGTCAGAAACAAGCCGGAGGTGC
CCCAGAATGGTCCCGACCGTGGCAGGCCCGCTGCTTGCCTTGCCGACTTC
GGGGCGGACAGCACCGATGAGGTGGGGGCCGTTGGGGACGAGGATTGATT
AACGGATCGGTGTTTTGTGTCGTTGGTTTTTCTTGCAGCCGTACATGCAG
CGAGCGAGACAAACGCGTCGTTTTTTGCCAAGCCAAAATTTCGCGTTTTG
CAGCTGACCTCCCTCCCAATGCTCAACGAAGCGTCCCTCGACTTCGTTCT
TTTCCTGACGACAACCGTGACTCCCCCTAAAATGCGAGTGCTCTCGTGCT
TTCCGTTCAACAGTTGCTCGGTTCCGACTTTGTTCTTTGTTCGCCAACAT
GCCATTCCTTTCCACAAGGAACTTCAACAGCCTCCCTCTCCCCACCCACA
CTCACCCATCCCAACAAGGCGGTGAGAGAGCTGTCCGCGGCGCTGACCGA
AAAGCTATGCTCCTGGGCCTCCGGGACGGATTCGGCGTCCACCGCCGTGG
CCGAGTGGTCCCGGTGGGTGGACTGGTCCCTGCCGCTGGAGATCAGGGAC
GAGGGGCGGGCGGTGAGGCCCATCGGAGTCGCGCCGGACGGGCGGCTACG
GGTGGTGGACCCGGCAACGGGCGAGGAGGAACTACTCACCACGGAGTACC
TCCTTTAGACCGCGAGGGCATTGTTTCGCTGGTGTACCTTCTTTTTGACC
GCGCGCAGCCTTTTTTCGTCTTGTTGAGAAACTCTCACAACGGCGATTGT
TGTATGGCTACCGGGGAATAAATCTGTTTTTTTTTCAACAGAGGAGGAGG
GGATGAGTACAAGAAGCTGTTCGCCTAGTCTCCGCCGAGACTCTCCCCAC
ACTATTTTCGATAACGGGGCACCCAATTTGAGTTGCATCCACACATCTTT
GCTTTGTTGTGAAGATTTCGTGTCTCCGTGCTCTACCAGCTCTGTCTTGA
GACCTTTCGGCAAGGCCACTTGGTAGAGGTATGGCATTTTTTAGGGTGTT
CCATGGATCACGAAAACCACTTTTCGGCAAGACCAGTCTGTTGTCGTGAG
ACCCCGATTTATGGG
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Coding sequence (CDS) from alignment at chr_00:3511304..3515368-

>Ec-00_003530.2 ID=Ec-00_003530.2|Name=Ec-00_003530.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=315bp|location=Sequence derived from alignment at chr_00:3511304..3515368- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTCCTGGGCCTCCGGGACGGATTCGGCGTCCACCGCCGTGGCCGAGT
GGTCCCGGTGGGTGGACTGGTCCCTGCCGCTGGAGATCAGGGACGAGGGG
CGGGCGGTGAGGCCCATCGGAGTCGCGCCGGACGGGCGGCTACGGGTGGT
GGACCCGGCAACGGGCGAGGAGGAACTACTCACCACGGAGTACCTCCTTT
AGACCGCGAGGGCATTGTTTCGCTGGTGTACCTTCTTTTTGACCGCGCGC
AGCCTTTTTTCGTCTTGTTGAGAAACTCTCACAACGGCGATTGTTGTATG
GCTACCGGGGAATAA
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Synonyms
The feature 'Ec-00_003530.2' has the following synonyms
Synonym
Esi0217_0039
Esi_0217_0039