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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Length | 2658 |
Hectar predicted targeting category | other localisation |
Gene id | Ec-00_003510.1 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_003510.1 ID=Ec-00_003510.1|Name=Ec-00_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=328bp MLHFVKRRVKRHQQQLQRRRRQQLLQQRAAAAPIMLSAEIPQVSAAPLVS PPSAFSDAGTRRRQQEREHPTQGTSRVDVSSREAASKLIVTTDFKARGSM VPEDKFIWRKVVDKNHKTVFRLCSSLTMAVNYQERERGEGSQGRCLASPE EKARAEEKLASDDQRILQPAGHGPNRRIHFLYDNVGTFLCKVKTSRRHAI RLQSEIYHRADQERQLRQPVRVSQHLPPPPVVGNRVWEPVIGSDVELLLP KALAGGAVKDIWYRVRVCELDSNGKVVFGFLVSQARTEKITKFSSVYDYD EVVRKKGYVVRPGTHLTWKVMPTSAAP* back to topspliced messenger RNA >Ec-00_003510.1 ID=Ec-00_003510.1|Name=Ec-00_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2658bp|location=Sequence derived from alignment at chr_00:3494010..3499259+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
AGCAACCAAACCTGATCCATCTTGCGACGACACACCAGACTCGAGTCAAG CGTGTACATCGCAGGCAGGACCAAAGGTAGATACATTAGTCATCTTGCGC CTTCATTACTGGAATGTGGAAGTGGTGAACAGGGTGAGCGACTTTCATCC ATAGCAGGAATTGACGGACCAACTGGGGTTCCGAACGATGCTTCACTTTG TGAAGAGAAGAGTGAAGCGTCACCAGCAACAGCTGCAGCGGCGAAGGCGG CAGCAGCTGCTGCAGCAGCGGGCAGCGGCAGCCCCGATTATGCTATCGGC CGAGATACCGCAGGTGTCAGCAGCACCGCTAGTATCCCCACCGAGTGCGT TCAGTGACGCGGGAACTCGGCGCCGCCAGCAAGAGCGTGAGCACCCAACA CAAGGGACATCGCGAGTGGACGTCTCGTCAAGGGAGGCCGCCTCGAAATT AATTGTCACGACGGACTTCAAGGCCCGCGGAAGTATGGTCCCTGAAGACA AGTTCATCTGGCGCAAAGTGGTCGACAAGAACCACAAGACAGTTTTTAGG CTGTGCTCGAGCTTGACAATGGCCGTAAATTACCAGGAGCGGGAACGGGG TGAAGGATCACAGGGCCGATGCCTAGCCTCGCCGGAAGAAAAGGCGCGGG CAGAAGAAAAGTTGGCGTCAGATGACCAGCGTATCCTTCAACCTGCAGGC CATGGTCCGAACAGACGAATACACTTCCTGTACGACAACGTTGGCACCTT TCTGTGCAAGGTCAAGACCAGCCGCCGCCACGCGATACGGCTGCAGTCGG AGATCTACCACAGGGCTGACCAAGAGCGGCAGCTACGGCAGCCGGTCCGC GTGTCGCAGCACCTGCCACCGCCACCGGTGGTTGGAAACCGAGTTTGGGA GCCCGTCATCGGGTCTGATGTGGAATTGCTCTTGCCCAAGGCGCTCGCGG GGGGTGCCGTGAAAGACATCTGGTACCGCGTGAGGGTTTGCGAGTTGGAC AGCAATGGAAAGGTCGTGTTCGGCTTCCTCGTCAGTCAAGCAAGAACCGA GAAGATTACCAAGTTTTCGTCAGTGTACGACTATGACGAAGTCGTCCGAA AGAAGGGATACGTGGTCCGCCCCGGTACCCATCTCACGTGGAAAGTCATG CCTACATCGGCGGCACCATGATGCCCGGGTCGCAGGCGTGCCATGAGGCG GGTTTGCGAGGCAGCTACGGAAAGCCGAGGGTGCTCGGTAATTTGTTGGT TGAAGGTGGCCGTGTAAGAACAACTGTCGCAGAGAGAAGTGGTTCGTGGG TTTGGTGAACACATAACGCCAAGAATGAATGTGTTCGATGTTGTGCCGAC GGCAGCAGACCAGATGAACTGGAGTGCATGGCCAGTCAAACAAGTGTAAG CGTGTCCACCTTTTGACTTTATGGCTATTGAGTGCTAGGGGGAACGATTT GCCCCCCGCCCCCCAATGGGGCGGGCGGCCAGCATGCGTGAGATGGGTGC GACGGTTCGATAAGCAAAGGAAGTAGACGCGATGATGACATCGCTTCGGA AAAAGGGTACTCGAACGGCTTAGCTAGGTACACGATGTGAGGTCGGTAAG TACGTCTGTTCGTTGCGTAGATCGGTGTTCTGCAAAATAGAATGAACACG AAAGGGATTTTCGTGGAATGAATGATCGATGCCCGATCACAAAACGTGAA GCGGACAGAAGACGGGGGTGGGGAATATATTGAAGAGGGAATGGGGAAAA CAAACACGACGCATTATTAAAGCGAGCAAAGGTAAGGGGCCGTTGTCACC GGTGGTCCTGTGTGCAGGGATGAAATTTGCGGCGGTGTGGTATCTGTCCA TGCGAGTGGTGGTTGTGGCGGGCGAGATGGCGGACGTAGCGAATCCGCGT GATCACCCAGAGGATTGTGAAGAAGTAAATCGCCCCGCCGCTAGCCGGTC GGGCTCCGGTTACCCTATTGAAACTTCTCTTGCCTAGCAAGCAAGAAGAA GTCTCGAACAGGGGGGAGGAATGTGGAGACCACCTTCATAAAGAAAGGTA CTATCTCCCCAACGTCTGTGGAGGACGATCCTTCTTTATACAGTTTGTTG GGGAAGCCGGAAATATAGGGAAGGCCGGGTCGTTTTTTATGACGCTTAGA AATCGATTCACCTTGTATATATGTCAATTTTGTCATGCTCGAACGGGATA GGCTGTCAAAGGAAAAATATCAAACATAGGGGATGATAAGCTCATCATCC CCTCCCGTGAGCAAATTAGCTCCGATATCGATCTCCCGAGAAAATGGATC GTAAGGAAGGGGGGGGGTGTCGTATTTTCTCTCGTACGCGCCAAAATATA CATAAAAGTAGTTTTCTTGCATACATTTTTGATATGTGTTTTTGGTGCAT AAGCTACGTGCACAACCACATATTGAAGTATCTTGAGCAGTTTTTGGTGT TGACCGGTACCAAACATTCAGGGTGGCAACAATGAGCAATGAACAAGTTG GACGGGCAATAACGAATGGGCAGACAATATTTCATTCAGAAAATCTACGC ATTTTCGGAAAAAAAATGTGTTCTGAACGGAATCGAACCCGTGACCTAAT GTGTACGAGTTTTTAGAGGGGATATTCTATGGTAAGTAGCCAGAGCACAA TCGTGGGG back to topprotein sequence of Ec-00_003510.1 >Ec-00_003510.1 ID=Ec-00_003510.1|Name=Ec-00_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=328bp
MLHFVKRRVKRHQQQLQRRRRQQLLQQRAAAAPIMLSAEIPQVSAAPLVS PPSAFSDAGTRRRQQEREHPTQGTSRVDVSSREAASKLIVTTDFKARGSM VPEDKFIWRKVVDKNHKTVFRLCSSLTMAVNYQERERGEGSQGRCLASPE EKARAEEKLASDDQRILQPAGHGPNRRIHFLYDNVGTFLCKVKTSRRHAI RLQSEIYHRADQERQLRQPVRVSQHLPPPPVVGNRVWEPVIGSDVELLLP KALAGGAVKDIWYRVRVCELDSNGKVVFGFLVSQARTEKITKFSSVYDYD EVVRKKGYVVRPGTHLTWKVMPTSAAP* back to topmRNA from alignment at chr_00:3494010..3499259+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-00_003510.1 ID=Ec-00_003510.1|Name=Ec-00_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5250bp|location=Sequence derived from alignment at chr_00:3494010..3499259+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) AGCAACCAAACCTGATCCATCTTGCGACGACACACCAGACTCGAGTCAAG
CGTGTACATCGCAGGCAGGACCAAAGGTGAGGTCAGGACTACTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTCTTCACATCAAAAACCGTTCTCTCTGCT
CAGTACCTTCGTCTGTCCGTACTAGTCTAACACTTGACGGGGTCGATTCC
TGTGGTCACAGGCTAGCTTACCCAAAAACTGTACGTTCAGCATATATCGT
CGCAAGGTCCCGTTCACACAACCGACCGCACATCATGGCGAACTGTCGCG
TGAGGAGGTTGAGCACACGATGTTGTTGTCGCCAGCATGCTGCCGACCTT
GGCGACAGCCATGGAGGCAACTTTGGAACGAAAGGTCTGTGTATTCCCCA
ATCATCACCTCTTGCTGTCCGGCTCGGTGCTCGCGGATGATCAGATCAAA
CATTGGACAACTTCTGAGCCACACTAATGTTGAACTTACCGCAGGTAGAT
ACATTAGTCATCTTGCGCCTTCATTACTGGAATGTGGAAGTGGTGAACAG
GGTGAGCGACTTTCATCCATAGCAGGAATTGACGGACCAACTGGGGTTCC
GAACGATGCTTCACTTTGTGAAGAGAAGAGTGGTGAGTGGAACGTTGGCG
TCCAATGAGTGTTTCGCCGAAACCATATACGAGTTCCATATGCTGACTCC
GATTGGAATGAAAGCGTTCCCGTTGGACTGTGGCGCCACCGATCGCAACC
GGGACTGCTGCAACACCATGTCAGGCAAAACGTATGGCCCTCAAAGAATG
CTTTATCTTGGATGGACGTACCAATGGGTAAAGCATTTGCCGTGTAAGAC
GTGGCCCGGTGTTGCGTAACGCGTCTCCATCCAGCTCCCAGTGGATCGAG
AACCGCGGTTCCAACGATTCTTCGTTTGCGTTGGGTAGCGGCTACGGCAG
CTGAATGGGACAAAGACGGCGGCTGTACAATGGGACCCGATGTTTGACGC
AAGAGCGAAGACACGACCCGTCTTTCCCACCTCTTCAACGTGAACGCAGA
AGCGTCACCAGCAACAGCTGCAGCGGCGAAGGCGGCAGCAGCTGCTGCAG
CAGCGGGCAGCGGCAGCCCCGATTATGCTATCGGCCGAGATACCGCAGGT
GTCAGCAGCACCGCTAGTATCCCCACCGAGTGCGTTCAGTGACGCGGGAA
CTCGGCGCCGCCAGCAAGAGCGTGAGCACCCAACACAAGGGACATCGCGA
GTGGACGTCTCGTCAAGGCAAGCATCAGTAGCAAAACACATTCGCCAGAC
ATCATTAATCGCGTAGACTAGTCTACACAAGTAGTGGCCTTCGAGGAATT
TCCCCCAGAGCAGTCTGTTTCCCCTCTTTCCGCTGGTTGGAGGAATGAGG
CCTCTCGCCCAGGCCGAGGGGAGTGAACAAACCACTATCACCCCCTCGTC
CATGACCAGGGTAAGTGAATACTGGTAAATGAATAGACTCTCGTCCGCGA
CCAAGGTGAGTGAGCAGTGAAGTGTTGGAGGAATGCGCCCTCTAGTCATA
GTCCATGTTCGAGGTGCATTGATATGTCTCACCCTAGCCCCTGTTGTTCC
ACGATGCTCTCTTACCGACAACTTCTTCACAACTCTGCAGTAGTCTTTGC
CATCGTTCCGCCCCACGAGCGGTTGCCTTACATACATCAGTACATTTGAT
GTTGATAGGGCCGACCCGCTCATTGAAATCGTACAGTGAAATGGTCCGTC
CCACCCTTGCGACTCCTACATGTGCAGCTGATGTTTGCTGCAGGGTATGT
AGAGATCGATGCTTTGATACAGCTTGCGACAGAGCGCGAGAGAGAATGGA
CCCACACCCCGTGTAGCAGGGCCATAAGAATTCATGAACCTAGATAATAG
CTTGGCCAAGCACTCTGTACCACGTCTGCAGATGGGTGCAGTGGTGGTGT
TTTTCACGGGTGCTTCCCCGTCCATTCTCTCGTATGCGGCTGACGTGACA
CACAGTGTTGTTGCTTCAGCCGCAGAAAGCGCAGCCGAACAACCAGATGG
TCAATTGCCACGACCGTAAAGCGAGGCTGAAGCGATTCTCATCGGGGTGG
TCAATAATGGCGTTTGTGTACATTTGGTCTCCCTTTGGCTTGATCACAAA
TCCTGTCGCACTTTGCTGTACGCGCGTCTCAAACGTTTCATACAAGAGGC
ATTGGTAGGTTTGTACACGATGCTTGCTCAACAAGGTTCAACCTGTTGAC
CCCCCCCCCCCCCCCTTCCGCCCCCGGCATCGTTGGCCGTTTCGGACTTG
TTCCTCCTGCTTGCCTTTCCTTGTACTTGTGTCGACGTGCGTTTGTTATC
CTGTTGTAGGGAGGCCGCCTCGAAATTAATTGTCACGACGGACTTCAAGG
CCCGCGGAAGTATGGTCCCTGAAGACAAGTTCATCTGGCGCAAAGTGGTC
GACAAGAACCACAAGACAGTTTTTAGGCTGTGCTCGAGGTGCACGAATGA
CGGCGCCACTCGAACATCTTCGTGTTGTACATATTGTGGACGCCAAAGAC
TGGTGCCACCCTAGACTTTAATTGTAGCTAACCCCGTATTGTTGTTGAAG
CCGAGCGTTCCCTTCCTCCCTCTCATGTCTCATCCTCGCTCTACAGCGGA
CAACTCTCATCTTTTTCGTCGCGACCTCTCTCCTCTCTACGCTGTTCGGC
CTCCGCAGCTTGACAATGGCCGTAAATTACCAGGAGCGGGAACGGGGTGA
AGGATCACAGGGCCGATGCCTAGCCTCGCCGGAAGAAAAGTGAGTATAGA
CAAGTGGGTGTCAGAAATCATCCCTTCTGGCGTGCGGAGTTGTCTGAAGA
ACAGTGCCATACTATGTACATATCGTCTCACTGCTGAACGACGTGGCTGC
TCCTGTCGGCTTCAGGGCGCGGGCAGAAGAAAAGTTGGCGTCAGATGACC
AGCGTATCCTTCAACCTGCAGGCCATGGTCCGAACAGACGAATACACTTC
CTGTACGACAACGTTGGCACCTTTCTGTGCAAGGTCAAGACCAGGTACGA
ATGATTCAACCCTCACGAGAGGCTGGGAAGGGTGACGAAACACAACAGGC
ACATTGGATACAAGCAAACGGTACCACTCTGGCCGTAGAGGGGAATGGAC
ACTTGGCGTGAGAAATCTCTTTTCTGCGTCTTCAAGTTTGGTCGAACCTC
CAACGATGTGAGTGGGAGTACATGAGATGGAATCTCCCTTGAAGATGAAG
ATGGATCAGCTGGTAGTCTCGGGCCACATGCAATTCGAACGCTCAACCCA
TCATTTCGCCCCCTCTAAGCCCCGATTATCGTGTGTTGACGACCGACCGC
CGACTTCGAGTAGCCGCCGCCACGCGATACGGCTGCAGTCGGAGATCTAC
CACAGGGCTGACCAAGAGCGGCAGCTACGGCAGCCGGTCCGCGTGTCGCA
GCACCTGCCACCGCCACCGGTGGTTGGAAACCGAGTTTGGGAGCCCGTCA
TCGGGTCTGATGTGGAATTGCTCTTGCCCAAGGCGCTCGCGGGGGGTGCC
GTGAAAGACATCTGGTACCGCGTGAGGGTTTGCGAGTTGGACAGCAATGG
AAAGGTCGTGTTCGGCTTCCTCGTCAGTCAAGCAAGAACCGAGAAGATTA
CCAAGTTTTCGTCAGTGTACGACTATGACGAAGTCGTCCGAAAGAAGGGA
TACGTGGTCCGCCCCGGTACCCATCTCACGTGGAAAGTCATGCCTACATC
GGCGGCACCATGATGCCCGGGTCGCAGGCGTGCCATGAGGCGGGTTTGCG
AGGCAGCTACGGAAAGCCGAGGGTGCTCGGTAATTTGTTGGTTGAAGGTG
GCCGTGTAAGAACAACTGTCGCAGAGAGAAGTGGTTCGTGGGTTTGGTGA
ACACATAACGCCAAGAATGAATGTGTTCGATGTTGTGCCGACGGCAGCAG
ACCAGATGAACTGGAGTGCATGGCCAGTCAAACAAGTGTAAGCGTGTCCA
CCTTTTGACTTTATGGCTATTGAGTGCTAGGGGGAACGATTTGCCCCCCG
CCCCCCAATGGGGCGGGCGGCCAGCATGCGTGAGATGGGTGCGACGGTTC
GATAAGCAAAGGAAGTAGACGCGATGATGACATCGCTTCGGAAAAAGGGT
ACTCGAACGGCTTAGCTAGGTACACGATGTGAGGTCGGTAAGTACGTCTG
TTCGTTGCGTAGATCGGTGTTCTGCAAAATAGAATGAACACGAAAGGGAT
TTTCGTGGAATGAATGATCGATGCCCGATCACAAAACGTGAAGCGGACAG
AAGACGGGGGTGGGGAATATATTGAAGAGGGAATGGGGAAAACAAACACG
ACGCATTATTAAAGCGAGCAAAGGTAAGGGGCCGTTGTCACCGGTGGTCC
TGTGTGCAGGGATGAAATTTGCGGCGGTGTGGTATCTGTCCATGCGAGTG
GTGGTTGTGGCGGGCGAGATGGCGGACGTAGCGAATCCGCGTGATCACCC
AGAGGATTGTGAAGAAGTAAATCGCCCCGCCGCTAGCCGGTCGGGCTCCG
GTTACCCTATTGAAACTTCTCTTGCCTAGCAAGCAAGAAGAAGTCTCGAA
CAGGGGGGAGGAATGTGGAGACCACCTTCATAAAGAAAGGTACTATCTCC
CCAACGTCTGTGGAGGACGATCCTTCTTTATACAGTTTGTTGGGGAAGCC
GGAAATATAGGGAAGGCCGGGTCGTTTTTTATGACGCTTAGAAATCGATT
CACCTTGTATATATGTCAATTTTGTCATGCTCGAACGGGATAGGCTGTCA
AAGGAAAAATATCAAACATAGGGGATGATAAGCTCATCATCCCCTCCCGT
GAGCAAATTAGCTCCGATATCGATCTCCCGAGAAAATGGATCGTAAGGAA
GGGGGGGGGTGTCGTATTTTCTCTCGTACGCGCCAAAATATACATAAAAG
TAGTTTTCTTGCATACATTTTTGATATGTGTTTTTGGTGCATAAGCTACG
TGCACAACCACATATTGAAGTATCTTGAGCAGTTTTTGGTGTTGACCGGT
ACCAAACATTCAGGGTGGCAACAATGAGCAATGAACAAGTTGGACGGGCA
ATAACGAATGGGCAGACAATATTTCATTCAGAAAATCTACGCATTTTCGG
AAAAAAAATGTGTTCTGAACGGAATCGAACCCGTGACCTAATGTGTACGA
GTTTTTAGAGGGGATATTCTATGGTAAGTAGCCAGAGCACAATCGTGGGG
back to topCoding sequence (CDS) from alignment at chr_00:3494010..3499259+ >Ec-00_003510.1 ID=Ec-00_003510.1|Name=Ec-00_003510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=984bp|location=Sequence derived from alignment at chr_00:3494010..3499259+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGCTTCACTTTGTGAAGAGAAGAGTGAAGCGTCACCAGCAACAGCTGCA GCGGCGAAGGCGGCAGCAGCTGCTGCAGCAGCGGGCAGCGGCAGCCCCGA TTATGCTATCGGCCGAGATACCGCAGGTGTCAGCAGCACCGCTAGTATCC CCACCGAGTGCGTTCAGTGACGCGGGAACTCGGCGCCGCCAGCAAGAGCG TGAGCACCCAACACAAGGGACATCGCGAGTGGACGTCTCGTCAAGGGAGG CCGCCTCGAAATTAATTGTCACGACGGACTTCAAGGCCCGCGGAAGTATG GTCCCTGAAGACAAGTTCATCTGGCGCAAAGTGGTCGACAAGAACCACAA GACAGTTTTTAGGCTGTGCTCGAGCTTGACAATGGCCGTAAATTACCAGG AGCGGGAACGGGGTGAAGGATCACAGGGCCGATGCCTAGCCTCGCCGGAA GAAAAGGCGCGGGCAGAAGAAAAGTTGGCGTCAGATGACCAGCGTATCCT TCAACCTGCAGGCCATGGTCCGAACAGACGAATACACTTCCTGTACGACA ACGTTGGCACCTTTCTGTGCAAGGTCAAGACCAGCCGCCGCCACGCGATA CGGCTGCAGTCGGAGATCTACCACAGGGCTGACCAAGAGCGGCAGCTACG GCAGCCGGTCCGCGTGTCGCAGCACCTGCCACCGCCACCGGTGGTTGGAA ACCGAGTTTGGGAGCCCGTCATCGGGTCTGATGTGGAATTGCTCTTGCCC AAGGCGCTCGCGGGGGGTGCCGTGAAAGACATCTGGTACCGCGTGAGGGT TTGCGAGTTGGACAGCAATGGAAAGGTCGTGTTCGGCTTCCTCGTCAGTC AAGCAAGAACCGAGAAGATTACCAAGTTTTCGTCAGTGTACGACTATGAC GAAGTCGTCCGAAAGAAGGGATACGTGGTCCGCCCCGGTACCCATCTCAC GTGGAAAGTCATGCCTACATCGGCGGCACCATGA back to top
Synonyms
The feature 'Ec-00_003510.1' has the following synonyms
Synonym |
Esi217_0051 |
Esi_217_0051 |
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