Ec-00_003280.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_003280.1
Unique Name	Ec-00_003280.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	467

Homology

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BLAST of Ec-00_003280.1 vs. uniprot
Match: A0A6H5JRJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ2_9PHAE)

HSP 1 Score: 565 bits (1456), Expect = 7.030e-195
Identity = 399/472 (84.53%), Postives = 412/472 (87.29%), Query Frame = 1

Query:  313 MGCHASKQASLSGEIRSEELAKCAAVSGEVRWVWLRSRSLFSFAELRSLFKQFQAALRASSQQQQEQPGELQYHDLLGAASQAAPVCSVEAIKGGGRAPSYGGAPGSAMSKAQFLSLCESSDAFRLSEVVGAFGSRLFDVLDASGVGFLDFETFVLGLSKLLKGPEKERLKLLYSAYDLSGVAPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKVKPSRRSKYLTLEDITAVLASASQTAAYPALLSFTTDGKGGMTTGHLSGGGLIGGGXXXXXXXX-MFCCSXXXXXXXXNGEGCSGGAXXXXXXXXXXXXXXXXXENDGGLCGGGECRRGAEKSPRNGGEGGLPSNQDSLRNSGEGRKEACGXXXXXXXXXXXXXXXX-----GSSARVSSDPEALAELLRDMAQRNAERYAVAAVSEFGQAQGGTGLTQKEFEKWALTGPVLRCRINEFSIDLNLAPFQGVRLW 1710
            MGCHASKQASL+GEIRSEELAKCAAVSGEVRWVWLRSR+LFSFAELRSLFKQFQAALRASSQQQQ+Q GELQYHDLLGAASQ APVCSVEA KGGG APS GGAPGSAMSKAQFLSLCESSDAFRLSEVVGAFGSRLFDVLDA+G GFLDFET VLGLSKLLKGPE+ERLKLLYSAYDLSGVAPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXX  K KPSRRSKYLTLEDITAVLASASQ AAYPALLSFTTDGKGGMTTGHLSGGG+IGGGXXXX XX  MFCCSXXXXXXXX         XXXXXXXXXXXXXXXXX+ND G                     GLPS +DSLR+S EG+KEACG   XXXXXXXXXXXX      G SARVS DPEALAELLR+MAQRNAERYA AAVSEFGQAQGG GLTQKEFE+WALTGPVLRCRINEFSIDLNLAPF+GVRLW
Sbjct:    1 MGCHASKQASLNGEIRSEELAKCAAVSGEVRWVWLRSRALFSFAELRSLFKQFQAALRASSQQQQQQSGELQYHDLLGAASQPAPVCSVEATKGGGGAPSCGGAPGSAMSKAQFLSLCESSDAFRLSEVVGAFGSRLFDVLDANGFGFLDFETLVLGLSKLLKGPERERLKLLYSAYDLSGVAPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKPSRRSKYLTLEDITAVLASASQAAAYPALLSFTTDGKGGMTTGHLSGGGVIGGGXXXXTXXDGMFCCSXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXDNDRGWXXXXXXXXXXXXXXXXXXXXGLPSKEDSLRDSEEGKKEACGGRGXXXXXXXXXXXXGRSSRRGCSARVSRDPEALAELLREMAQRNAERYAAAAVSEFGQAQGGAGLTQKEFERWALTGPVLRCRINEFSIDLNLAPFRGVRLW 468

[Close]

BLAST of Ec-00_003280.1 vs. uniprot
Match: D7FRP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP0_ECTSI)

HSP 1 Score: 474 bits (1220), Expect = 1.110e-160
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 1

Query:  313 MGCHASKQASLSGEIRSEELAKCAAVSGEVRWVWLRSRSLFSFAELRSLFKQFQAALRASSQQQQEQPGELQYHDLLGAASQAAPVCSVEAIKGGGRAPSYGGAPGSAMSKAQFLSLCESSDAFRLSEVVGAFGSRLFDVLDASGVGFLDFETFVLGLSKLLKGPEKERLKLLYSAYDLSGVAPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKVKPSRRSKYLTLEDITAVLASASQTAAYPALLSFTTDGKGGMTTGHLSGGGLIGGGXXXXXXXXMFCCSXXXXXXXXNGEGCSGGA 1224
            MGCHASKQASLSGEIRSEELAKCAAVSGEVRWVWLRSRSLFSFAELRSLFKQFQAALRASSQQQQEQPGELQYHDLLGAASQAAPVCSVEAIKGGGRAPSYGGAPGSAMSKAQFLSLCESSDAFRLSEVVGAFGSRLFDVLDASGVGFLDFETFVLGLSKLLKGPEKERLKLLYSAYDLSGVAPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKVKPSRRSKYLTLEDITAVLASASQTAAYPALLSFTTDGKGGMTTGHLSGGGLIGGGXXXXXXXXMFCCSXXXXXXXXNGEGCSGGA
Sbjct:    1 MGCHASKQASLSGEIRSEELAKCAAVSGEVRWVWLRSRSLFSFAELRSLFKQFQAALRASSQQQQEQPGELQYHDLLGAASQAAPVCSVEAIKGGGRAPSYGGAPGSAMSKAQFLSLCESSDAFRLSEVVGAFGSRLFDVLDASGVGFLDFETFVLGLSKLLKGPEKERLKLLYSAYDLSGVAPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKVKPSRRSKYLTLEDITAVLASASQTAAYPALLSFTTDGKGGMTTGHLSGGGLIGGGXXXXXXXXMFCCSXXXXXXXXNGEGCSGGA 304

[Close]

BLAST of Ec-00_003280.1 vs. uniprot
Match: A0A6H5JF53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF53_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 1.180e-85
Identity = 245/308 (79.55%), Postives = 253/308 (82.14%), Query Frame = 1

Query:  805 PEKERLKLLYSAYDLSGVAPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKVKPSRRSKYLTLEDITAVLASASQTAAYPALLSFTTDGKGGMTTGHLSGGGLIGGGXXXXXXXX-MFCCSXXXXXXXXNGEGCSGGAXXXXXXXXXXXXXXXXXENDGGLCGGGECRRGAEKSPRNGGEGGLPSNQDSLRNSGEGRKEACGXXXXXXXXXXXXXXXX-----GSSARVSSDPEALAELLRDMAQRNAERYAVAAVSEFGQAQGGTGLTQKEFEKWALTGPVLRCRINEFSIDLNLAPFQGVRLW 1710
            P  ERLKLLYSAYDLSGVAPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXX  K KPSRRSKYLTLEDITAVLASASQ AAYPALLSFTTDGKGGMTTGHLSGGG+IGGGXXXX XX  MFCCSXXXXXXXX         XXXXXXXXXXXXXXXXX+ND G                     GLPS +DSLR+S EG+KEACG   XXXXXXXXXXXX      G SARVS DPEALAELLR+MAQRNAERYA AAVSEFGQAQGG GLTQKEFE+WALTGPVLRCRINEFSIDLNLAPF+GVRLW
Sbjct:    4 PNLERLKLLYSAYDLSGVAPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKPSRRSKYLTLEDITAVLASASQAAAYPALLSFTTDGKGGMTTGHLSGGGVIGGGXXXXTXXDGMFCCSXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXDNDRGWXXXXXXXXXXXXXXXXXXXXGLPSKEDSLRDSEEGKKEACGGRGXXXXXXXXXXXXGRSSRRGCSARVSRDPEALAELLREMAQRNAERYAAAAVSEFGQAQGGAGLTQKEFERWALTGPVLRCRINEFSIDLNLAPFRGVRLW 307

The following BLAST results are available for this feature:

BLAST of Ec-00_003280.1 vs. uniprot

BLAST of Ec-00_003280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5JRJ2_9PHAE	7.030e-195	84.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FRP0_ECTSI	1.110e-160	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JF53_9PHAE	1.180e-85	79.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:3286506..3291402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	1907
Hectar predicted targeting category	other localisation
Gene id	Ec-00_003280.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_003280	Ec-00_003280	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 3286506..3291402 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003280.1.1	Ec-00_003280.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3286506..3287307 +
Ec-00_003280.1.2	Ec-00_003280.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3290298..3291402 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003280	5UTR:Ec-00_003280.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 3286506..3286818 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003280.1	CDS:Ec-00_003280.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 3286819..3287307 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003280	3UTR:Ec-00_003280.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 3291210..3291402 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003280.1	Ec-00_003280.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 3286819..3291209 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:3286506..3291402+
coding sequence from alignment at chr_00:3286506..3291402+

mRNA sequence

>Ec-00_003280.1 ID=Ec-00_003280.1|Name=Ec-00_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=467bp
MGCHASKQASLSGEIRSEELAKCAAVSGEVRWVWLRSRSLFSFAELRSLF
KQFQAALRASSQQQQEQPGELQYHDLLGAASQAAPVCSVEAIKGGGRAPS
YGGAPGSAMSKAQFLSLCESSDAFRLSEVVGAFGSRLFDVLDASGVGFLD
FETFVLGLSKLLKGPEKERLKLLYSAYDLSGVAPSEERRKSSQSSGGSSS
LSGGNGTGGGGGGGGSGKVKPSRRSKYLTLEDITAVLASASQTAAYPALL
SFTTDGKGGMTTGHLSGGGLIGGGGGGTGGDGMFCCSCCWCCTGCNGEGC
SGGAGAGAGAGAGAGAGAGGGENDGGLCGGGECRRGAEKSPRNGGEGGLP
SNQDSLRNSGEGRKEACGGGGGSSSSSSSSSSRRGSSARVSSDPEALAEL
LRDMAQRNAERYAVAAVSEFGQAQGGTGLTQKEFEKWALTGPVLRCRINE
FSIDLNLAPFQGVRLW*

spliced messenger RNA

>Ec-00_003280.1 ID=Ec-00_003280.1|Name=Ec-00_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1907bp|location=Sequence derived from alignment at chr_00:3286506..3291402+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TATTTACTACACTCACCACTCACACCTCTACGATAGTCAACCAAAACACA
CAACGCATACCATACGGGGAGACCTACGACTACCACTGCAGCGAGAGGGA
GAGAAGGACCTCCTAACGAGACCACACGAGGCCTAGTTAGGAGTGTCGCG
CCGTCGGCGGCGGCGACAGATCAGCTAGCTTCTCGCACCCAACAAACTGC
AACTGCTGGTGGAGGATCCAGGTGTTTCTCGCTGGGTTGCCTCCTTCCGA
TACCCCGCCTCCCCGAAATTCCGTGAAAAAGTAAAAGAGGCCTGAAGTTC
CCGAGTAGCGCAAATGGGCTGCCACGCGAGCAAGCAGGCTAGCCTGAGCG
GGGAGATTCGGTCGGAGGAGCTAGCCAAGTGCGCCGCGGTTTCGGGCGAG
GTGCGATGGGTCTGGCTCAGATCACGGTCTCTCTTCAGCTTCGCTGAACT
TCGCTCGCTCTTCAAGCAATTCCAAGCAGCTCTGCGAGCGTCGTCACAGC
AGCAGCAGGAGCAGCCTGGTGAACTTCAATACCACGACCTGCTCGGCGCC
GCGTCCCAGGCGGCGCCCGTCTGCAGCGTGGAGGCCATCAAAGGGGGCGG
CCGAGCTCCGTCGTACGGCGGCGCGCCGGGCTCGGCGATGAGCAAGGCGC
AGTTCCTGTCGCTGTGCGAGTCGAGCGACGCGTTTCGTTTGTCTGAGGTG
GTCGGCGCCTTCGGGTCACGGCTCTTCGATGTCCTCGACGCTAGCGGCGT
TGGGTTCCTGGACTTCGAGACCTTCGTGCTCGGGCTAAGCAAGCTGCTCA
AGGGACCAGAGAAGGAGAGGCTGAAGCTCCTATACTCCGCCTACGACCTG
TCGGGAGTGGCGCCCAGCGAAGAGCGACGGAAGTCGAGCCAATCGAGCGG
AGGCAGCAGCAGCTTGAGCGGCGGCAACGGCACCGGCGGCGGCGGCGGCG
GTGGTGGCAGTGGCAAGGTCAAGCCGTCCCGAAGGAGCAAGTACCTCACC
CTCGAGGACATCACGGCCGTCCTCGCCAGCGCCTCGCAGACGGCGGCCTA
CCCGGCCCTCTTGAGCTTCACCACGGACGGTAAGGGCGGCATGACCACCG
GCCACCTCAGCGGCGGGGGGCTTATCGGCGGTGGCGGAGGTGGCACCGGC
GGCGATGGCATGTTTTGCTGCAGCTGCTGCTGGTGCTGCACGGGCTGCAA
CGGCGAAGGCTGCAGCGGCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCG
GAGCCGGAGCCGGAGCCGGAGGCGGCGAGAACGACGGCGGCTTGTGTGGT
GGTGGAGAGTGCAGAAGAGGGGCGGAAAAATCACCCCGAAATGGGGGGGA
GGGTGGGCTCCCGTCTAACCAGGACAGCCTTAGAAATAGTGGGGAAGGAA
GAAAGGAGGCGTGCGGCGGGGGAGGAGGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGGCGAGGCAGCAGCGCCAGGGTTAGCAGCGACCCGGAAGC
GCTGGCGGAGCTCCTCCGAGATATGGCGCAGCGGAACGCGGAGAGATACG
CAGTGGCGGCGGTGTCGGAATTCGGCCAGGCGCAGGGGGGCACCGGGCTG
ACCCAAAAGGAGTTCGAGAAGTGGGCCCTGACCGGCCCCGTCCTTCGGTG
CCGCATCAACGAGTTCTCGATAGACCTCAACCTTGCCCCTTTCCAGGGGG
TGCGGCTGTGGTGAGTGTGAAACGGGTGGTCCCTAGGAAGGGCGTGCGTT
CGGCTAGTAGGCTGTGTGTCTTCCGGCGGCGGGGTGGTGTTCTCTTCTGT
GCTCTTCTCGTTGTCTTATCGGGTTCTTGGTTGAGGCGTGGGTGTGGTGG
GAACGCGTGTTGAGGGTGGGCGGAGGAGGGGTTATATGGGAGAGTGTTCA
GTGGGGG

protein sequence of Ec-00_003280.1

>Ec-00_003280.1 ID=Ec-00_003280.1|Name=Ec-00_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=467bp
MGCHASKQASLSGEIRSEELAKCAAVSGEVRWVWLRSRSLFSFAELRSLF
KQFQAALRASSQQQQEQPGELQYHDLLGAASQAAPVCSVEAIKGGGRAPS
YGGAPGSAMSKAQFLSLCESSDAFRLSEVVGAFGSRLFDVLDASGVGFLD
FETFVLGLSKLLKGPEKERLKLLYSAYDLSGVAPSEERRKSSQSSGGSSS
LSGGNGTGGGGGGGGSGKVKPSRRSKYLTLEDITAVLASASQTAAYPALL
SFTTDGKGGMTTGHLSGGGLIGGGGGGTGGDGMFCCSCCWCCTGCNGEGC
SGGAGAGAGAGAGAGAGAGGGENDGGLCGGGECRRGAEKSPRNGGEGGLP
SNQDSLRNSGEGRKEACGGGGGSSSSSSSSSSRRGSSARVSSDPEALAEL
LRDMAQRNAERYAVAAVSEFGQAQGGTGLTQKEFEKWALTGPVLRCRINE
FSIDLNLAPFQGVRLW*

mRNA from alignment at chr_00:3286506..3291402+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_003280.1 ID=Ec-00_003280.1|Name=Ec-00_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4897bp|location=Sequence derived from alignment at chr_00:3286506..3291402+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TATTTACTACACTCACCACTCACACCTCTACGATAGTCAACCAAAACACA
CAACGCATACCATACGGGGAGACCTACGACTACCACTGCAGCGAGAGGGA
GAGAAGGACCTCCTAACGAGACCACACGAGGCCTAGTTAGGAGTGTCGCG
CCGTCGGCGGCGGCGACAGATCAGCTAGCTTCTCGCACCCAACAAACTGC
AACTGCTGGTGGAGGATCCAGGTGTTTCTCGCTGGGTTGCCTCCTTCCGA
TACCCCGCCTCCCCGAAATTCCGTGAAAAAGTAAAAGAGGCCTGAAGTTC
CCGAGTAGCGCAAATGGGCTGCCACGCGAGCAAGCAGGCTAGCCTGAGCG
GGGAGATTCGGTCGGAGGAGCTAGCCAAGTGCGCCGCGGTTTCGGGCGAG
GTGCGATGGGTCTGGCTCAGATCACGGTCTCTCTTCAGCTTCGCTGAACT
TCGCTCGCTCTTCAAGCAATTCCAAGCAGCTCTGCGAGCGTCGTCACAGC
AGCAGCAGGAGCAGCCTGGTGAACTTCAATACCACGACCTGCTCGGCGCC
GCGTCCCAGGCGGCGCCCGTCTGCAGCGTGGAGGCCATCAAAGGGGGCGG
CCGAGCTCCGTCGTACGGCGGCGCGCCGGGCTCGGCGATGAGCAAGGCGC
AGTTCCTGTCGCTGTGCGAGTCGAGCGACGCGTTTCGTTTGTCTGAGGTG
GTCGGCGCCTTCGGGTCACGGCTCTTCGATGTCCTCGACGCTAGCGGCGT
TGGGTTCCTGGACTTCGAGACCTTCGTGCTCGGGCTAAGCAAGCTGCTCA
AGGTATGTGCATTTATGGCGTGGTGGTGTTTTTCGGTGAAAGTTGTTGGT
TCATTTTTTAGCGGGCGGTTGTCCAAGCAATTGTACAGAGAGATAGATGC
ACCTGCTGTCCTGAGGCACTCAGTTGTTTTGTAAACTCCACGGGTAAGCA
TCAGTAGTCATGCAAAAAAACGCCCGCCGGCGCTTTCATCTACGTGAAGC
AGCAGCAGCAGCAGCAGCAGCGTCCAAAAGGTTGTTGTGTTGTTGTTGCC
TCGCGCCTGTGATGACAACCCAAGAAGCTTCCCTTCTAATGTGACAAGAT
TGCGACCGGTCTCTTTGAACCGACTGACCGCTGCCGCCTCTTCAAAAGGC
ACTACACCCGGCATCCTCCCGTGACATCTGTACGCCGACATAGCAGCACG
GGGCCGTAGCCTTGTGGGTAGATTTGGCGCCTTCTTTCATTCCCTGTGTG
GAGTAGGAGTCGAGCGGTCCCCAGGGGCAACAATGCGTTTCACCATCCAG
TCCTCCCCGTAACATATATGTATGAAGCCGCTGCTCTCCTCGCCTAGAAA
TCGGCCTGGAAATCACCTTGTATCGATTTTGGATACTTCATACATGGTAC
ATGCAGTCAGCTGCACCAGTATGGACATCAGTAGTGAGCGGAGAACGGAA
CGTTTTTTTGAGGTGAAGACAACACCAACAACAACAACAACGAACCAGCA
ACGGCGGCAGAGGAGTAGCAGAGAGTATTCTAGGATACAGCAGTAGCAGG
ACGGTGGGGACGCGACTTTACCTTGCACTTGCTGTTCAACTTGCAGACAG
AATCTCGCTGTATACCATGGAGGAAGGATCGCAGGGGACTCAACACTTCT
GTGCCTACACCGCCGCCGTGTACCTACGGGGCTTCCCTCTCTGTTGCACC
CGGCTCGCCTTGTAGTCCTTGGGCGGACATAACATACATAGCCGACCGCC
ATGTGCCGCGGCGATTTCAGATAGGCCTCCTATCACAGGCGTGTTACTTC
ATGTAGTTTTAGCTGGAGGCGGTAGTATACCGCCGCAAGGAGTCGCATAG
CAAGGCGCTTCCATCAAGTAGCCCAAAAGGGACACGTGGCCGAAGGTTAT
TGAAGGGTCTTACCCAACTTTTTTTATGTATGTATCGCCCCGAAATTGCC
GCGAGGACGCGGTGTGTGCTGACGGTGCGACGACCATTGGGCTATTTACC
CCAATACTGTTGAATTTTGTTCCCGGCCGGGTCTTGGCACAAGATTTGGT
TGGTTAGAGTATACTATCCAAACCATCCCCCGCACACGAGTTTGCATCCG
TTCGCACCCTGTCGGAAGGAATCGATTGTTTGCCGCCGTTGCAAGTAATG
GGTAGGTGTGGTTTTTGTCCCCCACCTGCTACGGCACCAGTTCTACGTGC
GCCTTTCTGTATAACCTTCATGTGTGTCAGGAGCAGCGTTCCCCAGCCCG
GACATTCTTCTCTTCTTTATTGTTGTTACCCTGCTGCTTCATGTACCTCC
GCCCGCCCTTCGATTTTTTCGCGAGAAGGGCGGTCCCTTTTTGTGTATTC
ATTCACGAGTACACCGCTAATTCGCCGCAGAGTTGACAAAATTGTCCGCT
CCCACGAGAGAGTGGAACCCAGGGCCTGCTTCCCACGGCCTGCAGATACT
ACTGGTACCTGGCATGATGCAGGCTTACGAGGTTACCGTGCGCACTAGAC
CACCGGTTCGGGACAAACAGCAGTGTAGGGATTTTAAACCGGAGTCTACC
TAAAGGGGGAGACGCAGAAAACAGCACCGCCCGCGACCACCACAAGACCG
CCTCCAGTCCGGCACCCGTCAGTGGCACGAATCATACGCGTATGTATGTT
CTTCCTTCCGCGTTTGTGATGGAATGGAATGCATTTTGATGCCGGTGCCA
TGCCCAAGCCGGTCCACCCCAGTGGCAGTTGAAGGCTCTGGGCACTGATG
AATAAGTGTGTGCTCTTATGTGCGACGGCTAGCACGCACGGCCCTTGGAG
CTTGCCATGGATAGTTCGGGGGTCGGTGCAGCTCCTTCTCCCAGTAGTGC
TGAACGGCTTGGTGGAATCTGATGATCTCCATGTCGGAATATAGTTGTCG
GAACATTCCTCGGGTAGGTGCAGCCCTGCGCAGTAACCCAGCGCCGCGGC
TTGCCGCGACCCACCAATCTACCCACCAGCGGTTTCTCGGGCTATATACT
GTCAACTCTGGGGGTGTATCCAGGAATTTTCCACAACCACTGCATTCGAT
CAAGTCGTAAGCACCCCTCCCCCTCGATCGGTTCGTGTTTCTGTGTGTCC
GTTAGTCTCTCGCCCTGTCTCAAGTGTTTCCTTCGTGTGAATCACCCCCC
GACTGGACCTCTTGCCACTGCTGTTACAGTATGTAGGGGTATGCGGTATT
CATCTTGCCGTGCCAGTGGATGGGTGTGCGGGGCGAGGTTAGGGTGCCGG
CGTCCTTTCCTGCCACGTCCTTTCTTCGCCGTTGTTTGCGAGTTGGGCTT
GCCCGTGTCCTCCCTTTCGTTCCCAGACAACGCGGATGTTCTCCTCCGAG
CTCCCTGAAGTGTTTTGTGTATGAGAACCAGATGAGAACCTCTTCCCAAA
CGATAATCTCGCCCCCGCGTTTCTCCTCCTGGTCGGCCTTCTAGCCCACA
CCCAACAATGCGCGGGCCTGCCTGCCTTCTTGGCATTGAGAAGGTCTGCG
AATGACTCAGCACAACCTGTAGGTCAAGTTGGAGAAAGAATGGCGCCGGG
AGAGAGTTGGGTTTGTCGTGCTTCTGACACCGGTCGCCAACATCTCCACG
CCAAGAACCGATCCGATCCCGACACACGCACCCCATGCTCTCTCAGCCGA
GATGTTAGAACGCAACTTGTAGTTCTTCTCCCGCTCGACCCTCTCGTTGT
TTCTTTCCCTCCTCCGACTTTTGTTGTTTGTTCCCACCCGACTTCTCCCA
GCCGTTAACCTTCCCCGCTTTTTTCGTGTCCACCTTGATCAGGGACCAGA
GAAGGAGAGGCTGAAGCTCCTATACTCCGCCTACGACCTGTCGGGAGTGG
CGCCCAGCGAAGAGCGACGGAAGTCGAGCCAATCGAGCGGAGGCAGCAGC
AGCTTGAGCGGCGGCAACGGCACCGGCGGCGGCGGCGGCGGTGGTGGCAG
TGGCAAGGTCAAGCCGTCCCGAAGGAGCAAGTACCTCACCCTCGAGGACA
TCACGGCCGTCCTCGCCAGCGCCTCGCAGACGGCGGCCTACCCGGCCCTC
TTGAGCTTCACCACGGACGGTAAGGGCGGCATGACCACCGGCCACCTCAG
CGGCGGGGGGCTTATCGGCGGTGGCGGAGGTGGCACCGGCGGCGATGGCA
TGTTTTGCTGCAGCTGCTGCTGGTGCTGCACGGGCTGCAACGGCGAAGGC
TGCAGCGGCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGGAGC
CGGAGCCGGAGGCGGCGAGAACGACGGCGGCTTGTGTGGTGGTGGAGAGT
GCAGAAGAGGGGCGGAAAAATCACCCCGAAATGGGGGGGAGGGTGGGCTC
CCGTCTAACCAGGACAGCCTTAGAAATAGTGGGGAAGGAAGAAAGGAGGC
GTGCGGCGGGGGAGGAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GGCGAGGCAGCAGCGCCAGGGTTAGCAGCGACCCGGAAGCGCTGGCGGAG
CTCCTCCGAGATATGGCGCAGCGGAACGCGGAGAGATACGCAGTGGCGGC
GGTGTCGGAATTCGGCCAGGCGCAGGGGGGCACCGGGCTGACCCAAAAGG
AGTTCGAGAAGTGGGCCCTGACCGGCCCCGTCCTTCGGTGCCGCATCAAC
GAGTTCTCGATAGACCTCAACCTTGCCCCTTTCCAGGGGGTGCGGCTGTG
GTGAGTGTGAAACGGGTGGTCCCTAGGAAGGGCGTGCGTTCGGCTAGTAG
GCTGTGTGTCTTCCGGCGGCGGGGTGGTGTTCTCTTCTGTGCTCTTCTCG
TTGTCTTATCGGGTTCTTGGTTGAGGCGTGGGTGTGGTGGGAACGCGTGT
TGAGGGTGGGCGGAGGAGGGGTTATATGGGAGAGTGTTCAGTGGGGG

Coding sequence (CDS) from alignment at chr_00:3286506..3291402+

>Ec-00_003280.1 ID=Ec-00_003280.1|Name=Ec-00_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1401bp|location=Sequence derived from alignment at chr_00:3286506..3291402+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCTGCCACGCGAGCAAGCAGGCTAGCCTGAGCGGGGAGATTCGGTC
GGAGGAGCTAGCCAAGTGCGCCGCGGTTTCGGGCGAGGTGCGATGGGTCT
GGCTCAGATCACGGTCTCTCTTCAGCTTCGCTGAACTTCGCTCGCTCTTC
AAGCAATTCCAAGCAGCTCTGCGAGCGTCGTCACAGCAGCAGCAGGAGCA
GCCTGGTGAACTTCAATACCACGACCTGCTCGGCGCCGCGTCCCAGGCGG
CGCCCGTCTGCAGCGTGGAGGCCATCAAAGGGGGCGGCCGAGCTCCGTCG
TACGGCGGCGCGCCGGGCTCGGCGATGAGCAAGGCGCAGTTCCTGTCGCT
GTGCGAGTCGAGCGACGCGTTTCGTTTGTCTGAGGTGGTCGGCGCCTTCG
GGTCACGGCTCTTCGATGTCCTCGACGCTAGCGGCGTTGGGTTCCTGGAC
TTCGAGACCTTCGTGCTCGGGCTAAGCAAGCTGCTCAAGGGACCAGAGAA
GGAGAGGCTGAAGCTCCTATACTCCGCCTACGACCTGTCGGGAGTGGCGC
CCAGCGAAGAGCGACGGAAGTCGAGCCAATCGAGCGGAGGCAGCAGCAGC
TTGAGCGGCGGCAACGGCACCGGCGGCGGCGGCGGCGGTGGTGGCAGTGG
CAAGGTCAAGCCGTCCCGAAGGAGCAAGTACCTCACCCTCGAGGACATCA
CGGCCGTCCTCGCCAGCGCCTCGCAGACGGCGGCCTACCCGGCCCTCTTG
AGCTTCACCACGGACGGTAAGGGCGGCATGACCACCGGCCACCTCAGCGG
CGGGGGGCTTATCGGCGGTGGCGGAGGTGGCACCGGCGGCGATGGCATGT
TTTGCTGCAGCTGCTGCTGGTGCTGCACGGGCTGCAACGGCGAAGGCTGC
AGCGGCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGG
AGCCGGAGGCGGCGAGAACGACGGCGGCTTGTGTGGTGGTGGAGAGTGCA
GAAGAGGGGCGGAAAAATCACCCCGAAATGGGGGGGAGGGTGGGCTCCCG
TCTAACCAGGACAGCCTTAGAAATAGTGGGGAAGGAAGAAAGGAGGCGTG
CGGCGGGGGAGGAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGC
GAGGCAGCAGCGCCAGGGTTAGCAGCGACCCGGAAGCGCTGGCGGAGCTC
CTCCGAGATATGGCGCAGCGGAACGCGGAGAGATACGCAGTGGCGGCGGT
GTCGGAATTCGGCCAGGCGCAGGGGGGCACCGGGCTGACCCAAAAGGAGT
TCGAGAAGTGGGCCCTGACCGGCCCCGTCCTTCGGTGCCGCATCAACGAG
TTCTCGATAGACCTCAACCTTGCCCCTTTCCAGGGGGTGCGGCTGTGGTG
A

Synonyms

The feature 'Ec-00_003280.1' has the following synonyms


Synonym
Esi0217_0005
Esi_0217_0005