Ec-00_003140.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003140.1
Unique NameEc-00_003140.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length134
Homology
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BLAST of Ec-00_003140.1 vs. uniprot
Match: D7FZ99_ECTSI (Kinase, CAMK CAMKL n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ99_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 2.120e-83
Identity = 129/134 (96.27%), Postives = 132/134 (98.51%), Query Frame = 1 
Query:   55 QMGDLRRTILNPSKWNQSGELLFQEEVTQAFLSLLNANPLRRPSLDTVSRLLACPLLWSPLVQRGGAGGARINDGNDVFRPHLPQDVREMIDTTIRDGLLADPALNTARGVWWEAPEFLSPWWKRPPIIMCIEP 456
            +MGDLRRTILNPSKWNQSGELLFQEEVTQAFLSLLNANPLRRPSLDTVSRLLACPLLWSPLVQRGG GGARI+DGNDVFRPHLPQDVREMID TIRDGLLADPALNTARGVWW+APEFLSPWWKRPPIIMCIEP
Sbjct:  697 KMGDLRRTILNPSKWNQSGELLFQEEVTQAFLSLLNANPLRRPSLDTVSRLLACPLLWSPLVQRGGEGGARISDGNDVFRPHLPQDVREMIDMTIRDGLLADPALNTARGVWWDAPEFLSPWWKRPPIIMCIEP 830
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BLAST of Ec-00_003140.1 vs. uniprot
Match: D7FP26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP26_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 2.110e-82
Identity = 130/159 (81.76%), Postives = 132/159 (83.02%), Query Frame = 1 
Query:    1 MTTRMASIRSGELRSSARQMGDLRRTILNPSKWNQSGELLFQEE-------VTQAFLSLLNANPLRRPSLDTVSRLLACPLLWSPLVQRGGAGGARINDGNDVFRPHLPQDVREMIDTTIRDGLLADPALNTARGVWWEAPEFLSPWWKRPPIIMCIEP 456
            MTTRMASIRSGELRSSARQ G   +    P +    G              VTQAFLSLLNANPLRRPSLDTVSRLLACPLLWSPLVQRGGAGGARINDGNDVFRPHLPQDVREMIDTTIRDGLLADPALNTARGVWWEAPEFLSPWWKRPPIIMCIEP
Sbjct:    1 MTTRMASIRSGELRSSARQDGRPPQDHPEPEQVEPVGGTALPGRDRSAAMSVTQAFLSLLNANPLRRPSLDTVSRLLACPLLWSPLVQRGGAGGARINDGNDVFRPHLPQDVREMIDTTIRDGLLADPALNTARGVWWEAPEFLSPWWKRPPIIMCIEP 159
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BLAST of Ec-00_003140.1 vs. uniprot
Match: A0A6H5JGU0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU0_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 8.430e-77
Identity = 121/134 (90.30%), Postives = 123/134 (91.79%), Query Frame = 1 
Query:   55 QMGDLRRTILNPSKWNQSGELLFQEEVTQAFLSLLNANPLRRPSLDTVSRLLACPLLWSPLVQRGGAGGARINDGNDVFRPHLPQDVREMIDTTIRDGLLADPALNTARGVWWEAPEFLSPWWKRPPIIMCIEP 456
            +MGDLR TILNPSKWNQSGELLFQEEVTQA LS+LNANPLRRPSLDTVSRLL CPLLWSPLVQRGG  GAR  DGN VFRP LPQDVREMIDTTIRDGLL DPALNT RGVWWEAPEFLSPWWKRPPIIMCIEP
Sbjct:  624 KMGDLRSTILNPSKWNQSGELLFQEEVTQALLSILNANPLRRPSLDTVSRLLECPLLWSPLVQRGGEDGARNRDGNHVFRPRLPQDVREMIDTTIRDGLLVDPALNTPRGVWWEAPEFLSPWWKRPPIIMCIEP 757
[Close]
BLAST of Ec-00_003140.1 vs. uniprot
Match: D7G6N6_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N6_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 4.010e-5
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:   55 QMGDLRRTILNPSKWNQSGELLFQEE 132
            +MGDLRRTILNPSKWNQSGELLFQEE
Sbjct:  499 KMGDLRRTILNPSKWNQSGELLFQEE 524
The following BLAST results are available for this feature:
BLAST of Ec-00_003140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FZ99_ECTSI2.120e-8396.27Kinase, CAMK CAMKL n=2 Tax=Ectocarpus siliculosus ... [more]
D7FP26_ECTSI2.110e-8281.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGU0_9PHAE8.430e-7790.30Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G6N6_ECTSI4.010e-596.15Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3194808..3196287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.9
Seed ortholog evalue3.9e-74
Seed eggNOG ortholog2880.D7FTL0
Length806
Hectar predicted targeting categoryother localisation
Gene idEc-00_003140.1
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs2E7K5@1,2SE5P@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003140Ec-00_003140Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3194808..3196287 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003140.1.2Ec-00_003140.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3194808..3195480 -
Ec-00_003140.1.1Ec-00_003140.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3196155..3196287 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0031403UTR:Ec-00_003140.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3194808..3195153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003140.1CDS:Ec-00_003140.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3195154..3195480 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0031405UTR:Ec-00_003140.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3196230..3196287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003140.1Ec-00_003140.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3195154..3196229 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003140.1 ID=Ec-00_003140.1|Name=Ec-00_003140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=134bp
MGDLRRTILNPSKWNQSGELLFQEEVTQAFLSLLNANPLRRPSLDTVSRL
LACPLLWSPLVQRGGAGGARINDGNDVFRPHLPQDVREMIDTTIRDGLLA
DPALNTARGVWWEAPEFLSPWWKRPPIIMCIEP*
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spliced messenger RNA

>Ec-00_003140.1 ID=Ec-00_003140.1|Name=Ec-00_003140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=806bp|location=Sequence derived from alignment at chr_00:3194808..3196287- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAACGCGCATGGCATCCATCCGCTCAGGTGAACTACGCAGCTCAGC
CCGCCAAGATGGGAGACCTCCGCAGGACCATCCTGAACCCGAGCAAGTGG
AACCAGTCGGGGGAACTGCTCTTCCAGGAAGAGGTCACACAAGCGTTCCT
GTCGCTGCTGAATGCGAACCCGCTAAGGCGCCCGAGTCTCGACACCGTGT
CCCGGCTCCTCGCATGCCCGCTCCTGTGGTCGCCTCTGGTGCAACGCGGG
GGCGCGGGCGGCGCAAGAATCAACGACGGCAACGATGTTTTCCGCCCCCA
CCTGCCCCAAGATGTGCGGGAAATGATCGACACGACCATCCGCGATGGCC
TCCTGGCAGACCCGGCACTCAACACAGCTAGAGGGGTGTGGTGGGAGGCG
CCGGAGTTCTTGTCGCCGTGGTGGAAGCGACCTCCGATAATAATGTGCAT
CGAGCCATGAGAGAGACATTGGGCGGCCCTGACCGATTGTTCCCGAGAAG
GACTCCATTTTGGTCGTAGATGGTTGTGGTGGTTGGAGGTGTCATGGTAT
TGCGGCAGGTCGCGTTGGGCGGTGGTGGATGTACCCATCAAGACGTCGGG
TTGTTTTATGTCTGGTCAAACGTGCGTTGAGGTCGTGTTGTGGTGTGTCC
AGCCCTGGTAGTTTGTTTTCCCTGCACCTATAAGGTGTGACGATTTAAAC
CCTTCTCGCGTCTTGCAGGCTAGAATGTTGTGGGAGTCCTTTTCTGCGAC
CCTTAGACGCGGAACGGCAAGGGCCAGACGCTTCCGGTCGCTGGTTCTCT
TGATAT
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protein sequence of Ec-00_003140.1

>Ec-00_003140.1 ID=Ec-00_003140.1|Name=Ec-00_003140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=134bp
MGDLRRTILNPSKWNQSGELLFQEEVTQAFLSLLNANPLRRPSLDTVSRL
LACPLLWSPLVQRGGAGGARINDGNDVFRPHLPQDVREMIDTTIRDGLLA
DPALNTARGVWWEAPEFLSPWWKRPPIIMCIEP*
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mRNA from alignment at chr_00:3194808..3196287-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003140.1 ID=Ec-00_003140.1|Name=Ec-00_003140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1480bp|location=Sequence derived from alignment at chr_00:3194808..3196287- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAACGCGCATGGCATCCATCCGCTCAGGTGAACTACGCAGCTCAGC
CCGCCAAGATGGGAGACCTCCGCAGGACCATCCTGAACCCGAGCAAGTGG
AACCAGTCGGGGGAACTGCTCTTCCAGGAAGAGGTGTGAGCATTTCGCCC
GTGCCATAGCTCGTTTGAGTTGGGCAGAGGAGAGGCGTTGCATAGGGAAG
ATGAAGTAAGCTCGCGCCTATCAATACTATTATGTTGATGCACTTATTGT
TGTGGGTGGATGCCTGGCCTTTGCTCGTGCATCACTATATCGACAGACCG
CTCTGCGGCGATGTCGGTGAGTGGGGCGGGGGGTCGAAAGTGCGGAAACG
ACTTTCTCTGGTGGAATCCCATGATTTGTGGAAACGACGTCCTTTTCGTG
TGGACATCCCATGATTCTAGGGCAGATGATTTCTACCCTTCGGAGAGCTC
AAGGGATTGGTTGCAGTTCTTGTGATTTGTCTCACAGCCTAGTCTAGCCG
GTAAAGCCGCTGAAAACCAGAAAGTTGTGTATTTTGAGGCTAGATCGATG
ACAACACGTGAAGCATCCAGCAAATCAGAGCGTCGGCCTCGAGTGTTTGA
AGCGGCGAAACTTGAGCTGGCCGCAGTGACCGTGGAGCCACTGGGTGACT
AAGTCATGAGTTGTTGTTTTCACCATGAAAGCCCCCAAACCCTCCCGTCT
CTCTCGTTTTTTGCTCCGCCCCCACCCCCAACGTTTGATTGCAAACACGA
CTGACTCCAATACGTCAGCATCACCAAACACCTCACGCCTGATTCACAAA
ACCTCAGGTCACACAAGCGTTCCTGTCGCTGCTGAATGCGAACCCGCTAA
GGCGCCCGAGTCTCGACACCGTGTCCCGGCTCCTCGCATGCCCGCTCCTG
TGGTCGCCTCTGGTGCAACGCGGGGGCGCGGGCGGCGCAAGAATCAACGA
CGGCAACGATGTTTTCCGCCCCCACCTGCCCCAAGATGTGCGGGAAATGA
TCGACACGACCATCCGCGATGGCCTCCTGGCAGACCCGGCACTCAACACA
GCTAGAGGGGTGTGGTGGGAGGCGCCGGAGTTCTTGTCGCCGTGGTGGAA
GCGACCTCCGATAATAATGTGCATCGAGCCATGAGAGAGACATTGGGCGG
CCCTGACCGATTGTTCCCGAGAAGGACTCCATTTTGGTCGTAGATGGTTG
TGGTGGTTGGAGGTGTCATGGTATTGCGGCAGGTCGCGTTGGGCGGTGGT
GGATGTACCCATCAAGACGTCGGGTTGTTTTATGTCTGGTCAAACGTGCG
TTGAGGTCGTGTTGTGGTGTGTCCAGCCCTGGTAGTTTGTTTTCCCTGCA
CCTATAAGGTGTGACGATTTAAACCCTTCTCGCGTCTTGCAGGCTAGAAT
GTTGTGGGAGTCCTTTTCTGCGACCCTTAGACGCGGAACGGCAAGGGCCA
GACGCTTCCGGTCGCTGGTTCTCTTGATAT
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Coding sequence (CDS) from alignment at chr_00:3194808..3196287-

>Ec-00_003140.1 ID=Ec-00_003140.1|Name=Ec-00_003140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=402bp|location=Sequence derived from alignment at chr_00:3194808..3196287- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGAGACCTCCGCAGGACCATCCTGAACCCGAGCAAGTGGAACCAGTC
GGGGGAACTGCTCTTCCAGGAAGAGGTCACACAAGCGTTCCTGTCGCTGC
TGAATGCGAACCCGCTAAGGCGCCCGAGTCTCGACACCGTGTCCCGGCTC
CTCGCATGCCCGCTCCTGTGGTCGCCTCTGGTGCAACGCGGGGGCGCGGG
CGGCGCAAGAATCAACGACGGCAACGATGTTTTCCGCCCCCACCTGCCCC
AAGATGTGCGGGAAATGATCGACACGACCATCCGCGATGGCCTCCTGGCA
GACCCGGCACTCAACACAGCTAGAGGGGTGTGGTGGGAGGCGCCGGAGTT
CTTGTCGCCGTGGTGGAAGCGACCTCCGATAATAATGTGCATCGAGCCAT
GA
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Synonyms
The feature 'Ec-00_003140.1' has the following synonyms
Synonym
Esi1845_0001
Esi_1845_0001