Ec-00_002830.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002830.1
Unique NameEc-00_002830.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length116
Homology
[Close]
BLAST of Ec-00_002830.1 vs. uniprot
Match: D7FMD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD8_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 2.560e-74
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 
Query:    1 MTSAAVSAGNPQQLEMLLAAFTNADNEARQRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQKAGGTGWFQDVIFPPGVDVR 345
            MTSAAVSAGNPQQLEMLLAAFTNADNEARQRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQKAGGTGWFQDVIFPPGVDVR
Sbjct:    1 MTSAAVSAGNPQQLEMLLAAFTNADNEARQRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQKAGGTGWFQDVIFPPGVDVR 115
[Close]
BLAST of Ec-00_002830.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.880e-24
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:   49 LLAAFTNADNEARQRAEVAWEDLKQRLPDEVLENMCAILGR-DDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQ 285
            LL AFT+ DN  R+RAE AWED+K RLPD+VLE +CA+LG+ D  E GE  GLRAMAAVLLRTLFD RSDVWFRVQ++TQ
Sbjct:   13 LLGAFTSPDNGVRRRAEEAWEDMKMRLPDQVLEQVCAVLGQADGGEGGE--GLRAMAAVLLRTLFDIRSDVWFRVQQQTQ 90
[Close]
BLAST of Ec-00_002830.1 vs. uniprot
Match: A0A835ZDS9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.240e-16
Identity = 48/103 (46.60%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:   37 QLEMLLAAFTNADNEARQRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQKAGGTGWFQDVIFPPGVDVR 345
            +LE LLAAF   DNEAR+ AE  W  +K+  PD V E +C IL           G+RAM+AVLLRTLF  RSD W+R+Q RTQ A      + V+  P   +R
Sbjct:    6 ELEGLLAAFMGLDNEARRAAEERWASIKKSAPDGVAEGLCMILSSTGETQPAYEGIRAMSAVLLRTLFGIRSDFWYRLQPRTQYAVREVLLRSVMEEPVRHIR 108
[Close]
BLAST of Ec-00_002830.1 vs. uniprot
Match: A0A6H5JCW6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.380e-10
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:  136 EVLENMCAILGR-DDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQ 285
            +VLE +CA+LG+ D  E GE  GLRAMAAVLLRTLFD RSDVWFRVQ+ TQ
Sbjct:   47 QVLEQVCAVLGQADGGEVGE--GLRAMAAVLLRTLFDIRSDVWFRVQQETQ 95
The following BLAST results are available for this feature:
BLAST of Ec-00_002830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMD8_ECTSI2.560e-74100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FNE2_ECTSI1.880e-2471.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDS9_9STRA8.240e-1646.60Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A6H5JCW6_9PHAE1.380e-1072.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2968980..2969832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue6.8e-22
Seed eggNOG ortholog2880.D7FNE2
Length348
KEGG koko:K20195,ko:K20221,ko:K20222
KEGG TC1.I.1
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
Gene idEc-00_002830.1
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002830Ec-00_002830Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2968980..2969832 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002830.1.1Ec-00_002830.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2968980..2969117 +
Ec-00_002830.1.2Ec-00_002830.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2969498..2969651 +
Ec-00_002830.1.3Ec-00_002830.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2969777..2969832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002830.1CDS:Ec-00_002830.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2968980..2969117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002830.1Ec-00_002830.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2968980..2969832 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002830.1 ID=Ec-00_002830.1|Name=Ec-00_002830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=116bp
MTSAAVSAGNPQQLEMLLAAFTNADNEARQRAEVAWEDLKQRLPDEVLEN
MCAILGRDDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQKAGGT
GWFQDVIFPPGVDVR*
back to top

spliced messenger RNA

>Ec-00_002830.1 ID=Ec-00_002830.1|Name=Ec-00_002830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=348bp|location=Sequence derived from alignment at chr_00:2968980..2969832+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCTGCTGCAGTTAGCGCGGGCAATCCACAGCAGCTGGAAATGTT
ACTCGCGGCGTTCACTAACGCGGACAACGAGGCCAGGCAGAGGGCGGAGG
TGGCTTGGGAAGACCTGAAGCAACGGCTCCCCGACGAGGTTCTGGAGAAC
ATGTGCGCCATCCTGGGGCGCGATGATGCGGAAGCCGGCGAGGCGGCGGG
GCTGCGAGCCATGGCGGCGGTTCTGCTCCGCACACTGTTCGACGCCCGCT
CCGACGTCTGGTTTAGGGTCCAGGAACGCACTCAGAAAGCAGGTGGAACG
GGATGGTTTCAAGATGTTATTTTCCCCCCCGGTGTGGACGTGCGCTGA
back to top

protein sequence of Ec-00_002830.1

>Ec-00_002830.1 ID=Ec-00_002830.1|Name=Ec-00_002830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=116bp
MTSAAVSAGNPQQLEMLLAAFTNADNEARQRAEVAWEDLKQRLPDEVLEN
MCAILGRDDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQKAGGT
GWFQDVIFPPGVDVR*
back to top

mRNA from alignment at chr_00:2968980..2969832+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002830.1 ID=Ec-00_002830.1|Name=Ec-00_002830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=853bp|location=Sequence derived from alignment at chr_00:2968980..2969832+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGTCTGCTGCAGTTAGCGCGGGCAATCCACAGCAGCTGGAAATGTT
ACTCGCGGCGTTCACTAACGCGGACAACGAGGCCAGGCAGAGGGCGGAGG
TGGCTTGGGAAGACCTGAAGCAACGGCTCCCCGACGAGGTAGGTTGTTGC
AGGCGGATGGGCCAGCGGGATCACCACTGCACCAGTGCTTGGATATATTT
GGGAAAAGCCCACGTCTTGTGATGAAGCATGGGCACGCGGGATTTCGTAT
TTTACTGGTAGCCTGAAGTCATTCCTCTTGTCGTGAAGTCAAGAGACACC
GTCGCCGCCCGCGTGTGTCTTGGCTGCTTGTAGTTGGAAGGCTGGTAGTT
TTTGTCGTCAGGTACGGGCGAAAGTTGGACTAACCCAAACTCCACCACCA
GCGTAACGCCCAACACACTACAACGGCACCACCATCACCAACACAACATC
AACCCAGACACGTGCCAAACCGCAACAACGCTCGTCACACCGTCTAACGT
GGCCGTCCGTTCGCGCAGGTTCTGGAGAACATGTGCGCCATCCTGGGGCG
CGATGATGCGGAAGCCGGCGAGGCGGCGGGGCTGCGAGCCATGGCGGCGG
TTCTGCTCCGCACACTGTTCGACGCCCGCTCCGACGTCTGGTTTAGGGTC
CAGGAACGCACTCAGAAAGCAGGTGAGATGCGGTGCTGATTATTTCTGAC
CTAGGGTCTGGGAACTCACTCAGATTGTATGTGGAATGTTCGGATGCATT
TTTCTTGCTGCTTGGGCGTGCGTCCCGCGGTCCGGGAACGCCCTCAGGTG
GAACGGGATGGTTTCAAGATGTTATTTTCCCCCCCGGTGTGGACGTGCGC
TGA
back to top

Coding sequence (CDS) from alignment at chr_00:2968980..2969832+

>Ec-00_002830.1 ID=Ec-00_002830.1|Name=Ec-00_002830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=348bp|location=Sequence derived from alignment at chr_00:2968980..2969832+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGTCTGCTGCAGTTAGCGCGGGCAATCCACAGCAGCTGGAAATGTT
ACTCGCGGCGTTCACTAACGCGGACAACGAGGCCAGGCAGAGGGCGGAGG
TGGCTTGGGAAGACCTGAAGCAACGGCTCCCCGACGAGGTTCTGGAGAAC
ATGTGCGCCATCCTGGGGCGCGATGATGCGGAAGCCGGCGAGGCGGCGGG
GCTGCGAGCCATGGCGGCGGTTCTGCTCCGCACACTGTTCGACGCCCGCT
CCGACGTCTGGTTTAGGGTCCAGGAACGCACTCAGAAAGCAGGTGGAACG
GGATGGTTTCAAGATGTTATTTTCCCCCCCGGTGTGGACGTGCGCTGA
back to top
Synonyms
The feature 'Ec-00_002830.1' has the following synonyms
Synonym
Esi1679_0001
Esi_1679_0001