Ec-00_002620.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002620.1
Unique NameEc-00_002620.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length63
Homology
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BLAST of Ec-00_002620.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.000e-28
Identity = 50/60 (83.33%), Postives = 52/60 (86.67%), Query Frame = 3 
Query:    6 LEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
            LEGIDH+GE+CC LGCGQCGG GC  SGASNGLGAESCC  EV DSGRYCDD NEAPCII
Sbjct:  746 LEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805
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BLAST of Ec-00_002620.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.240e-27
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 3 
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
            GLEGIDH+GE+CC L CGQCGG GC  SGASNGLGA+SCC  E++DSGR+CDDTNEAPCII
Sbjct:  546 GLEGIDHKGEVCCPLRCGQCGGSGCSTSGASNGLGADSCCSSEINDSGRHCDDTNEAPCII 606
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BLAST of Ec-00_002620.1 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.400e-24
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 MASRASTTEARSVVRSGVASAEVQDATLRALRTVSALSLAAHQRCTIAADTVTTPTRPRVSL 186
            MASRASTTEARSVVRSGVASAEVQDATL ALRTV ALSLAAHQRCTIAADTVTTPTRPRVSL
Sbjct:  430 MASRASTTEARSVVRSGVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTTPTRPRVSL 491
[Close]
BLAST of Ec-00_002620.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.520e-20
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 3 
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
            G EGID  G +CC +GCGQCGG GC  +G++NGLG+ESCC   V   G YCDDTNEAPCII
Sbjct:  576 GTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCII 636
[Close]
BLAST of Ec-00_002620.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.830e-20
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 3 
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
            G+EGID  G +CC LGCGQCGG GC  SGA+ GLGA+SCC   +  S  YCD+TNEAPCII
Sbjct:  350 GVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCII 410
[Close]
BLAST of Ec-00_002620.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.220e-20
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 3 
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
            G+EGIDH+GE+CC L CGQCGG GC ++G++NGL   SCC  EV     YC+DTN APCII
Sbjct:  686 GIEGIDHKGEVCCPLACGQCGGSGCGSAGSANGLDGASCCSSEVLAGNVYCEDTNAAPCII 746
[Close]
BLAST of Ec-00_002620.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.820e-19
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
            GLEGID  G +CC L C QCGG GC  SG++ GLG+ESCC   +  SG YCDDTNEAPCII
Sbjct:  548 GLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII 608
[Close]
BLAST of Ec-00_002620.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.840e-19
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
            GLEGID  G +CCSL CGQCGG GC  SG++NGLG + CC   +  S  YCD+TNEAPCII
Sbjct:  244 GLEGIDGSGGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCII 304
[Close]
BLAST of Ec-00_002620.1 vs. uniprot
Match: D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.740e-19
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 3 
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCI 182
            G+EGID R  +CC L CGQCGG GC  SGA+ GLGA+SCC   V  SG+YCDDT EAPCI
Sbjct:  320 GIEGIDGR-VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCI 378
[Close]
BLAST of Ec-00_002620.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.130e-18
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 3 
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185
            GLEGID  G +CC L CGQCGG GC  SG++NGL  +SCC   +  S  YCD+TNEAPCII
Sbjct:  451 GLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCII 511
The following BLAST results are available for this feature:
BLAST of Ec-00_002620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JYT7_9PHAE3.000e-2883.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIS5_ECTSI1.240e-2778.69FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FN07_ECTSI3.400e-2496.77FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JUS5_9PHAE1.520e-2065.57MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JC43_9PHAE1.830e-2065.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G651_ECTSI7.220e-2062.30Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
D7FQV4_ECTSI1.820e-1965.57Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5JZG5_9PHAE2.840e-1963.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN04_ECTSI9.740e-1966.67FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FIC5_ECTSI1.130e-1862.30Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2805281..2805469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length189
Hectar predicted targeting categoryother localisation
Gene idEc-00_002620.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002620Ec-00_002620Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2803425..2805469 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002620.1.1Ec-00_002620.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2805281..2805469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002620.1CDS:Ec-00_002620.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2805281..2805469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002620.1Ec-00_002620.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2805281..2805469 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002620.1 ID=Ec-00_002620.1|Name=Ec-00_002620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=63bp
MASRASTTEARSVVRSGVASAEVQDATLRALRTVSALSLAAHQRCTIAAD
TVTTPTRPRVSL*
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spliced messenger RNA

>Ec-00_002620.1 ID=Ec-00_002620.1|Name=Ec-00_002620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=189bp|location=Sequence derived from alignment at chr_00:2805281..2805469- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCGAGGGCATCGACCACAGAGGCGAGATCTGTTGTTCGCTCGGG
TGTGGCCAGTGCGGAGGTCCAGGATGCGACGCTTCGGGCGCTTCGAACGG
TCTCGGCGCTGAGTCTTGCTGCCCACCAGAGGTGCACGATAGCGGCAGAT
ACTGTGACGACACCAACGAGGCCCCGTGTATCATTATAG
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protein sequence of Ec-00_002620.1

>Ec-00_002620.1 ID=Ec-00_002620.1|Name=Ec-00_002620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=63bp
MASRASTTEARSVVRSGVASAEVQDATLRALRTVSALSLAAHQRCTIAAD
TVTTPTRPRVSL*
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mRNA from alignment at chr_00:2805281..2805469-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002620.1 ID=Ec-00_002620.1|Name=Ec-00_002620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=189bp|location=Sequence derived from alignment at chr_00:2805281..2805469- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCTCGAGGGCATCGACCACAGAGGCGAGATCTGTTGTTCGCTCGGG
TGTGGCCAGTGCGGAGGTCCAGGATGCGACGCTTCGGGCGCTTCGAACGG
TCTCGGCGCTGAGTCTTGCTGCCCACCAGAGGTGCACGATAGCGGCAGAT
ACTGTGACGACACCAACGAGGCCCCGTGTATCATTATAG
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Coding sequence (CDS) from alignment at chr_00:2805281..2805469-

>Ec-00_002620.1 ID=Ec-00_002620.1|Name=Ec-00_002620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=189bp|location=Sequence derived from alignment at chr_00:2805281..2805469- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCTCGAGGGCATCGACCACAGAGGCGAGATCTGTTGTTCGCTCGGG
TGTGGCCAGTGCGGAGGTCCAGGATGCGACGCTTCGGGCGCTTCGAACGG
TCTCGGCGCTGAGTCTTGCTGCCCACCAGAGGTGCACGATAGCGGCAGAT
ACTGTGACGACACCAACGAGGCCCCGTGTATCATTATAG
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Synonyms
The feature 'Ec-00_002620.1' has the following synonyms
Synonym
Esi1567_0001
Esi_1567_0001