Ec-00_002610.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_002610.2
Unique Name	Ec-00_002610.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	119

Homology

The following BLAST results are available for this feature:

BLAST of Ec-00_002610.2 vs. uniprot

BLAST of Ec-00_002610.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:2798703..2800879 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2177
Hectar predicted targeting category	other localisation
Gene id	Ec-00_002610.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_002610	Ec-00_002610	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 2798703..2800879 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002610.2.1	Ec-00_002610.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2798703..2800879 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002610	5UTR:Ec-00_002610.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 2798703..2800056 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002610.2	CDS:Ec-00_002610.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 2800057..2800413 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002610	3UTR:Ec-00_002610.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 2800414..2800879 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002610.2	Ec-00_002610.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 2800057..2800413 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:2798703..2800879+
coding sequence from alignment at chr_00:2798703..2800879+

mRNA sequence

>Ec-00_002610.2 ID=Ec-00_002610.2|Name=Ec-00_002610.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=119bp
MASAKDVHTNFCEERDRDRGDCYCCCCCCCCCCCCCCGSFSVSSVSVLCC
RELPMGLRKGLVRIDLLRIAMCRYVLCVFSVREPPRPKDMVYDDVDGVRF
DSIREGEGGASDGGGGRT*

spliced messenger RNA

>Ec-00_002610.2 ID=Ec-00_002610.2|Name=Ec-00_002610.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2177bp|location=Sequence derived from alignment at chr_00:2798703..2800879+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGAATCCCCGGCCAGGGCGCGGTGAAGGGGCCCAGCGTTCAGCT
TTGGGGGGGGGAATTGGGGGGGGTTAACGTACCGAAACCCAAACGGGAAA
CACGCCCGGGGGGGGGGGGGGGGGACGGGGCAGGGTTTGGGATCTCCGTT
TTTTTTTTTTGGCAAAGGGGATAAAGGGGCCCGTCGGGGGGAGCTTTTCC
CTGGGGAGCAACCATCCCGAAAAGCCTTAGGCAGGGGCCCCCCGGAGCTT
CCCCCCGCCGGGGGGGGGGGGGCGTTGTTACAAAGGGAAACGAGTTTTAC
GGGAGGGGTTTCCCTTAAAATACCCTGGGGGGGGGGGGGGGGGGGGGAGG
GAGGAAGGAAACGCTTGTCTGCCTTCTCCTGACTAGGGTGTCGTCGTGTT
TTTTTTTTCCCCCGTGAAGCTTGTGCATTTTTTGTTTGTGTGTGTGCCAA
TTTGGAGTCATGGTGGTGTAGTGTAGTTGTGTGTGGAGGAGGACGGGGGA
GGTTATGGTCTGTCTGTCTTTCCTTTTTTTTCGTTTCACGGCTCTGTTTG
TTTGTTCGGCTTGACCTCTTTTTGACTAAAAGGTATTCGTTGATGCGGTG
AGGCACATACATGAGTTTTATTTCCCTCCCAATTTTTTTTTTTTTTGTTT
CTTTTTTCTGGTCCACTATGCGTACCACGACCAACCCGCGTGCGAGGTGC
GAGGTGCGCGTACGACGATGTTGCTTTTGCTGTAACGGTGAGATTTTCGG
GTTCAGCAAGGTCGGCGGAATTATTTGACACTGTCTCTCTCTCCTGGGTT
ATAGGGGTGTACACAACACACCGTTCTTGCTTGCTTTCATCCTTCGGCTG
GGGGTGGTCGTGTGGACGCAGGCCATCAGGAAAAAAAAAAGACGTGCTGC
TGTTGTAGGGTTTTCAAGCCGCACTCTGTGCGCGCTGTTTGCTACGTCAC
CGGCTGACCGGCAGGCAATGGTGTGCTTGTCGTTTGGGTCTTATTTGTCT
CTTCCCACCCCTGGCGGAAACGGGGAGGGGGGGGGTGACGCAGAATGGCC
AATGAGAGAGACGAGGGAGGGGAGGGGTATTTTGTTGTGTTGTTTCGGGA
GGGTGCGAGATGTTATTTATTTGGTTGTTCGATAGCGTTAGAGTGCGCGA
GCGGGGCGAAACAGTGGCGCGGCCGATGGACAAACCGTAGCCTCGTTGCC
GATCGCGTGTGGTATTCTATATCCTATAAGTTGCCCTTTGTTGTGTGTGT
GTCCACCCCCAAACAAGAAGAGGACGCTGATAGGAGTGTAGCCTTGTATA
TGTATGCCGTGGCTGTTGGTGTTTTTTTGGGTGGGGTAACATCAAACGTT
TTCCATGGCGTCGGCAAAAGACGTACACACAAATTTCTGTGAGGAACGAG
ATAGGGATAGAGGCGACTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCGGGTCATTTTCTGTTTCTAGTGTATCAGTCTTGTG
CTGCCGTGAGCTGCCTATGGGCTTACGAAAGGGGTTGGTGCGAATAGATC
TCTTGCGAATAGCAATGTGCAGATATGTATTATGTGTTTTTTCGGTGCGT
GAACCGCCGCGACCGAAAGACATGGTGTATGATGATGTTGATGGGGTGCG
GTTTGATTCCATTCGGGAGGGGGAAGGGGGCGCGTCGGACGGGGGCGGTG
GACGTACTTAGCGTTTTGGGAGGACCGTTTTGCTATTACTAGTGACCTAG
CTCCGTCGGGTGTTCCTGTTGTTGTATTGTTCCGTGTTCTGTCGGCAGGG
CTAGTCGTTGTGTCTTGTCTGCTTGCTGCCCCTTGCTGTGAAGAAGAAAT
AAGAATCGCGAATTGCTGCTTGCTGTGGTCCCTTGTGTTACATCTGATCT
GAGATGTTGTGAAACTGCTGTCTGTGGTCCTGTTAATTTTCTTGCGTTAG
TTAGAGGCGTTTGTGTTTCTTCTCCTTTTTCGTTCTTGTCTGTCCTTTCG
CTTGGTCGCAAGCCAATGAACCGCGCTTGGACGCAATATAACGGTACACA
CGCCTTCGAGTTTGCTTTCCTTTCGTGTTGTGCATGTTTCTTCTTCTTGT
CTTTCCTGTGTGTGTTCGAAAGCTGCTGGATATGTTGCCACACTAGGTAA
ATATCCACACCCAGGATGGGAGGGGGG

protein sequence of Ec-00_002610.2

>Ec-00_002610.2 ID=Ec-00_002610.2|Name=Ec-00_002610.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=119bp
MASAKDVHTNFCEERDRDRGDCYCCCCCCCCCCCCCCGSFSVSSVSVLCC
RELPMGLRKGLVRIDLLRIAMCRYVLCVFSVREPPRPKDMVYDDVDGVRF
DSIREGEGGASDGGGGRT*

mRNA from alignment at chr_00:2798703..2800879+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_002610.2 ID=Ec-00_002610.2|Name=Ec-00_002610.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2177bp|location=Sequence derived from alignment at chr_00:2798703..2800879+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCCGGAATCCCCGGCCAGGGCGCGGTGAAGGGGCCCAGCGTTCAGCT
TTGGGGGGGGGAATTGGGGGGGGTTAACGTACCGAAACCCAAACGGGAAA
CACGCCCGGGGGGGGGGGGGGGGGACGGGGCAGGGTTTGGGATCTCCGTT
TTTTTTTTTTGGCAAAGGGGATAAAGGGGCCCGTCGGGGGGAGCTTTTCC
CTGGGGAGCAACCATCCCGAAAAGCCTTAGGCAGGGGCCCCCCGGAGCTT
CCCCCCGCCGGGGGGGGGGGGGCGTTGTTACAAAGGGAAACGAGTTTTAC
GGGAGGGGTTTCCCTTAAAATACCCTGGGGGGGGGGGGGGGGGGGGGAGG
GAGGAAGGAAACGCTTGTCTGCCTTCTCCTGACTAGGGTGTCGTCGTGTT
TTTTTTTTCCCCCGTGAAGCTTGTGCATTTTTTGTTTGTGTGTGTGCCAA
TTTGGAGTCATGGTGGTGTAGTGTAGTTGTGTGTGGAGGAGGACGGGGGA
GGTTATGGTCTGTCTGTCTTTCCTTTTTTTTCGTTTCACGGCTCTGTTTG
TTTGTTCGGCTTGACCTCTTTTTGACTAAAAGGTATTCGTTGATGCGGTG
AGGCACATACATGAGTTTTATTTCCCTCCCAATTTTTTTTTTTTTTGTTT
CTTTTTTCTGGTCCACTATGCGTACCACGACCAACCCGCGTGCGAGGTGC
GAGGTGCGCGTACGACGATGTTGCTTTTGCTGTAACGGTGAGATTTTCGG
GTTCAGCAAGGTCGGCGGAATTATTTGACACTGTCTCTCTCTCCTGGGTT
ATAGGGGTGTACACAACACACCGTTCTTGCTTGCTTTCATCCTTCGGCTG
GGGGTGGTCGTGTGGACGCAGGCCATCAGGAAAAAAAAAAGACGTGCTGC
TGTTGTAGGGTTTTCAAGCCGCACTCTGTGCGCGCTGTTTGCTACGTCAC
CGGCTGACCGGCAGGCAATGGTGTGCTTGTCGTTTGGGTCTTATTTGTCT
CTTCCCACCCCTGGCGGAAACGGGGAGGGGGGGGGTGACGCAGAATGGCC
AATGAGAGAGACGAGGGAGGGGAGGGGTATTTTGTTGTGTTGTTTCGGGA
GGGTGCGAGATGTTATTTATTTGGTTGTTCGATAGCGTTAGAGTGCGCGA
GCGGGGCGAAACAGTGGCGCGGCCGATGGACAAACCGTAGCCTCGTTGCC
GATCGCGTGTGGTATTCTATATCCTATAAGTTGCCCTTTGTTGTGTGTGT
GTCCACCCCCAAACAAGAAGAGGACGCTGATAGGAGTGTAGCCTTGTATA
TGTATGCCGTGGCTGTTGGTGTTTTTTTGGGTGGGGTAACATCAAACGTT
TTCCATGGCGTCGGCAAAAGACGTACACACAAATTTCTGTGAGGAACGAG
ATAGGGATAGAGGCGACTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCGGGTCATTTTCTGTTTCTAGTGTATCAGTCTTGTG
CTGCCGTGAGCTGCCTATGGGCTTACGAAAGGGGTTGGTGCGAATAGATC
TCTTGCGAATAGCAATGTGCAGATATGTATTATGTGTTTTTTCGGTGCGT
GAACCGCCGCGACCGAAAGACATGGTGTATGATGATGTTGATGGGGTGCG
GTTTGATTCCATTCGGGAGGGGGAAGGGGGCGCGTCGGACGGGGGCGGTG
GACGTACTTAGCGTTTTGGGAGGACCGTTTTGCTATTACTAGTGACCTAG
CTCCGTCGGGTGTTCCTGTTGTTGTATTGTTCCGTGTTCTGTCGGCAGGG
CTAGTCGTTGTGTCTTGTCTGCTTGCTGCCCCTTGCTGTGAAGAAGAAAT
AAGAATCGCGAATTGCTGCTTGCTGTGGTCCCTTGTGTTACATCTGATCT
GAGATGTTGTGAAACTGCTGTCTGTGGTCCTGTTAATTTTCTTGCGTTAG
TTAGAGGCGTTTGTGTTTCTTCTCCTTTTTCGTTCTTGTCTGTCCTTTCG
CTTGGTCGCAAGCCAATGAACCGCGCTTGGACGCAATATAACGGTACACA
CGCCTTCGAGTTTGCTTTCCTTTCGTGTTGTGCATGTTTCTTCTTCTTGT
CTTTCCTGTGTGTGTTCGAAAGCTGCTGGATATGTTGCCACACTAGGTAA
ATATCCACACCCAGGATGGGAGGGGGG

Coding sequence (CDS) from alignment at chr_00:2798703..2800879+

>Ec-00_002610.2 ID=Ec-00_002610.2|Name=Ec-00_002610.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=357bp|location=Sequence derived from alignment at chr_00:2798703..2800879+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTCGGCAAAAGACGTACACACAAATTTCTGTGAGGAACGAGATAG
GGATAGAGGCGACTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCGGGTCATTTTCTGTTTCTAGTGTATCAGTCTTGTGCTGC
CGTGAGCTGCCTATGGGCTTACGAAAGGGGTTGGTGCGAATAGATCTCTT
GCGAATAGCAATGTGCAGATATGTATTATGTGTTTTTTCGGTGCGTGAAC
CGCCGCGACCGAAAGACATGGTGTATGATGATGTTGATGGGGTGCGGTTT
GATTCCATTCGGGAGGGGGAAGGGGGCGCGTCGGACGGGGGCGGTGGACG
TACTTAG

Synonyms

The feature 'Ec-00_002610.2' has the following synonyms


Synonym
Esi565_0001
Esi_565_0001