Ec-00_002590.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002590.1
Unique NameEc-00_002590.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length114
Homology
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BLAST of Ec-00_002590.1 vs. uniprot
Match: D7FL85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL85_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 7.510e-48
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    1 MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLSTVRRMDRPVYRLGPHC 339
            MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLSTVRRMDRPVYRLGPHC
Sbjct:    1 MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLSTVRRMDRPVYRLGPHC 113
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BLAST of Ec-00_002590.1 vs. uniprot
Match: D7FI30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI30_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.190e-33
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLST 294
            MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLST
Sbjct:    1 MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLST 98
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BLAST of Ec-00_002590.1 vs. uniprot
Match: A0A6H5JK44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK44_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.190e-26
Identity = 78/98 (79.59%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTXXXXXXXXXXXXXXXXXXXXXXXXXETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLST 294
            MASINTLARVAT+SV RAP +SR IATASAAPARRFLSTT   XXXXX      XXXXXXXXX  +TSSGGSSFLQR AAFLTGAGVGCG+GYYHL+T
Sbjct:   14 MASINTLARVATMSVGRAPGSSRGIATASAAPARRFLSTTTSEXXXXXKHTPPSXXXXXXXXXA-KTSSGGSSFLQRFAAFLTGAGVGCGLGYYHLAT 110
The following BLAST results are available for this feature:
BLAST of Ec-00_002590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FL85_ECTSI7.510e-48100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI30_ECTSI1.190e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK44_9PHAE3.190e-2679.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2782293..2783808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length342
Hectar predicted targeting categorymitochondrion
Gene idEc-00_002590.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002590Ec-00_002590Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2782293..2783808 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002590.1.2Ec-00_002590.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2782293..2782584 -
Ec-00_002590.1.1Ec-00_002590.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2783759..2783808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002590.1CDS:Ec-00_002590.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2782293..2782584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002590.1Ec-00_002590.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2782293..2783808 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002590.1 ID=Ec-00_002590.1|Name=Ec-00_002590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=114bp
MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTTSEAAAASEK
PSPPSPPPPQPTPSPETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLSTVR
RMDRPVYRLGPHC*
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spliced messenger RNA

>Ec-00_002590.1 ID=Ec-00_002590.1|Name=Ec-00_002590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=342bp|location=Sequence derived from alignment at chr_00:2782293..2783808- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTATCAACACGCTCGCGAGAGTAGCTACGGTGTCGGTGGCGAG
GGCGCCGGCGACGTCCCGAAGGATCGCTACTGCCTCCGCGGCGCCGGCAC
GGCGCTTCCTGTCAACAACAACAAGCGAGGCCGCCGCCGCCTCTGAGAAG
CCTTCCCCGCCGTCGCCTCCGCCGCCACAGCCCACGCCATCGCCGGAGAC
CAGCAGCGGGGGCTCGTCTTTCCTGCAGCGAGTCGCGGCATTTTTGACCG
GGGCTGGGGTGGGTTGCGGGGTCGGTTACTACCACCTGTCAACGGTGAGA
AGGATGGACCGGCCCGTATACCGTTTGGGCCCGCACTGCTAG
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protein sequence of Ec-00_002590.1

>Ec-00_002590.1 ID=Ec-00_002590.1|Name=Ec-00_002590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=114bp
MASINTLARVATVSVARAPATSRRIATASAAPARRFLSTTTSEAAAASEK
PSPPSPPPPQPTPSPETSSGGSSFLQRVAAFLTGAGVGCGVGYYHLSTVR
RMDRPVYRLGPHC*
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mRNA from alignment at chr_00:2782293..2783808-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002590.1 ID=Ec-00_002590.1|Name=Ec-00_002590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1516bp|location=Sequence derived from alignment at chr_00:2782293..2783808- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTTCTATCAACACGCTCGCGAGAGTAGCTACGGTGTCGGTGGCGAG
GTGAGGAAGAGCTTGGTCCCCTCGTGAAATTTCGTTTTTGCCTTTCAATC
CGCACAAAGGTTCATTGCATTTTCCGCCCCGTCTCCAGCGGTTGTATGTA
TTACAGCAGTAGACCACCGTACTCCTGTTGCTGCCTGTCGCACAGCTCGC
ACAGCTTGTGTGTTCCATGGGTTCCAAGAGGTCTCACACCTCCAACTGAT
ATCCCCAAGGACTGGTGAGTTATTCACGTTGTTTTCATAAATTGAGCAAT
ACTTGGCCGCTTTTATTTGCTTCGCGTTGAAAGGGTTGTCCAACGTGCAA
GAGGTGTGATGAACAACACAGCAGCAGTTGTATTTTGTTGCCCCGGTTCT
CCTAAGGTTAGACCGCTGCTGTCACTCCCTCGAGAGCCAGCAGAGCAGGG
TGATGCCGGCCAGCTCCCACCTGAGATAGCGCATGTCGCAATCTCCGCGA
AAATGTAGTTGCAGGTGTTTAGCACATCCGTTGACACCGCAGAGAGAAAT
CGAAGAGCAAATCGTTCTCAGCCCAGCGCAAGTCCCGTCCGTGTTGATTA
TTTAGAAGTACCACATGTTCCGTGTTGCGAACGAGGAGGATGGTGCCGTA
CTGCTGTTACCGTGTATATACATGTAGCACCGGTGTGCAAGCCTGCGGCG
AGTTCAGCAACTCTCGTATGATGCTGCTGTTACCATGTACTCGTATATAC
ATGTAGCACCGGTGTGCAAGCCTGCCGCGAGTTCAGCAACTCTTGTTTGT
TCGAAGTAGGTTTACCATGACGGAAGGAGCAAGCACGTGTACTGATCGCC
GACACAAAATGGAAGTGAACCGCTCAAGCATGTCCGCCGTGGAACTTTCA
GCCAACTCAACGACAACGCCGCTTTACCTTGTGCGACTATCGACACCGTC
TACCACACAAGATAACAAGGCCACAAAATTACGCACTACGTCGCGGTTGT
ATTTTTGTAACCCACCATGAGAGCCCTGGATTTTACCATCACTTAAATAG
CACTATGTAGGATGACAGAAGATAACACCCACCGACGTGCCGCCGAGTGA
TGAGTTTTTTCACGCGCAAGATAAAAGTGTCACTGGCGGGGTGTGTTATC
CTGCGTGATATTCGGCGGCACTTTAATACCAATCCCTGCCGTTGGCCGTT
GTTGTCCCATCGTGTTCATCGCAGGGCGCCGGCGACGTCCCGAAGGATCG
CTACTGCCTCCGCGGCGCCGGCACGGCGCTTCCTGTCAACAACAACAAGC
GAGGCCGCCGCCGCCTCTGAGAAGCCTTCCCCGCCGTCGCCTCCGCCGCC
ACAGCCCACGCCATCGCCGGAGACCAGCAGCGGGGGCTCGTCTTTCCTGC
AGCGAGTCGCGGCATTTTTGACCGGGGCTGGGGTGGGTTGCGGGGTCGGT
TACTACCACCTGTCAACGGTGAGAAGGATGGACCGGCCCGTATACCGTTT
GGGCCCGCACTGCTAG
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Coding sequence (CDS) from alignment at chr_00:2782293..2783808-

>Ec-00_002590.1 ID=Ec-00_002590.1|Name=Ec-00_002590.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=342bp|location=Sequence derived from alignment at chr_00:2782293..2783808- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTTCTATCAACACGCTCGCGAGAGTAGCTACGGTGTCGGTGGCGAG
GGCGCCGGCGACGTCCCGAAGGATCGCTACTGCCTCCGCGGCGCCGGCAC
GGCGCTTCCTGTCAACAACAACAAGCGAGGCCGCCGCCGCCTCTGAGAAG
CCTTCCCCGCCGTCGCCTCCGCCGCCACAGCCCACGCCATCGCCGGAGAC
CAGCAGCGGGGGCTCGTCTTTCCTGCAGCGAGTCGCGGCATTTTTGACCG
GGGCTGGGGTGGGTTGCGGGGTCGGTTACTACCACCTGTCAACGGTGAGA
AGGATGGACCGGCCCGTATACCGTTTGGGCCCGCACTGCTAG
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Synonyms
The feature 'Ec-00_002590.1' has the following synonyms
Synonym
Esi1554_0001
Esi_1554_0001