Ec-00_002480.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_002480.2
Unique Name	Ec-00_002480.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	180

Homology

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BLAST of Ec-00_002480.2 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 471 bits (1213), Expect = 1.440e-163
Identity = 219/220 (99.55%), Postives = 219/220 (99.55%), Query Frame = 1

Query:   94 NNKCGGRSGFACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 753
            NNKCGGRSGFACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHG FNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL
Sbjct:  212 NNKCGGRSGFACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 431

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BLAST of Ec-00_002480.2 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 8.060e-145
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1

Query:  178 MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 753
            MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL
Sbjct:    1 MIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 192

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BLAST of Ec-00_002480.2 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 5.170e-133
Identity = 184/215 (85.58%), Postives = 195/215 (90.70%), Query Frame = 1

Query:  121 FACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 753
            FACIDP APCVDDD +TVDM++NC Y+  +GNGWCD  NN E C YDGGDCC CTCES ++DDY+CSSE+G F+CKDPNASCFGEE TGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG    D GCGEVGGLGCTA NTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTI+DIQVAFWKGNERTRTL
Sbjct:  244 FACIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYGSFDCKDPNASCFGEEPTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTL 458

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BLAST of Ec-00_002480.2 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 1.350e-125
Identity = 175/215 (81.40%), Postives = 191/215 (88.84%), Query Frame = 1

Query:  121 FACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 753
            F+CIDP A CV DD +TVDM +NC Y+  +GNGWCD  NN E C YDGGDCC CTC+S ++DDY CSSE+G F+C+DPNASCFGEE+TGSDD+STDD+PMSYEFVPWEETEALPTVDGAVEVGTKTEVGVS+TAHDVR G    D GCGEVGGLGCTA NTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTI+DIQVAFWKGNERTRTL
Sbjct:  144 FSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEESTGSDDYSTDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTL 358

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BLAST of Ec-00_002480.2 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 4.040e-124
Identity = 179/236 (75.85%), Postives = 202/236 (85.59%), Query Frame = 1

Query:  121 FACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLG*GRHPAG*RSPKQQALYFSY 816
            F+CIDP A CV DD +TVDM +NC Y+  +GNGWCD  NN E C YDGGDCC CTC+S ++DDY CSSE+G F+C+DPNASCFGEE+TGSDD+STDD+PMSYEFVPWEETEALPTVDGAVEVGTKTEVGVS+TAHDVR G    D GCGEVGGLGCTA NTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTI+DIQVAFWKGNERTRTL     P+  ++ + QA++F +
Sbjct:  506 FSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEESTGSDDYSTDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEIQAVFFGH 741

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BLAST of Ec-00_002480.2 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 5.710e-121
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 1

Query:  253 AYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 753
            +YDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL
Sbjct:   14 SYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 180

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BLAST of Ec-00_002480.2 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 5.030e-119
Identity = 167/217 (76.96%), Postives = 182/217 (83.87%), Query Frame = 1

Query:  121 FACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 753
            FACIDP APCVDDD VTVDM++NC Y+  +GNGWCD  NN E C YDGGDCC CTC+SA++DDY+CSSE+G F+C+DP ASCFGE TTGSDDFS  D  QPMSYEF+ WEETE+LPTV  AVEVGTKTEVGVS+TAHDVRPG    D GCGEVGGLGCTA NTRDGI S+IESRWSCAT LV DEGPCQIEFTFAEPQ IVDIQVAFW  NER  TL
Sbjct:    3 FACIDPSAPCVDDDDVTVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPTASCFGEGTTGSDDFSFHDDYQPMSYEFLSWEETESLPTVVDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTL 219

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BLAST of Ec-00_002480.2 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 2.160e-112
Identity = 164/217 (75.58%), Postives = 184/217 (84.79%), Query Frame = 1

Query:  121 FACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 753
            F+CIDP APCV+DD VT+DM++NC Y+  +GNGWCD  NN E C YDGGDCC CTC+SA++DDY+CSSE+G F+C+DP+ASCFGE TTGSDDFS  D  QPMSYEFV WEET++LPTV  AVEVGTKTEVGVS+TAHD+RPG    D GCGEVGGLGCTA NTRDGIFS+IESRWSCAT LV DEGPCQIEFTFAEPQ IVDIQVAFW  NER  TL
Sbjct:  464 FSCIDPSAPCVNDDDVTIDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTGSDDFSFHDDYQPMSYEFVSWEETDSLPTVVDAVEVGTKTEVGVSATAHDLRPGSSGGDVGCGEVGGLGCTATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTL 680

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BLAST of Ec-00_002480.2 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 2.060e-106
Identity = 154/219 (70.32%), Postives = 171/219 (78.08%), Query Frame = 1

Query:  121 FACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETT-GSDDFST---DDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 753
            F+CIDP APCV+DD +TVDM DNC Y+  +G+GWCD  NN E C YDGGDCC CTCES W+DDYTC  E   F+CKDP+A+CFGEET  G+ D ST    D    YEFVPWE+TE LPTVD AVEVGTKTEV VS+TAHDVR G    + GCGE GG GC A N RDGI +EIESRWSCA KL+DDEGPCQIEF+FAEPQ IVDIQVAFWKGNER RTL
Sbjct:   32 FSCIDPNAPCVNDDDITVDMFDNCGYVSGIGDGWCDSNNNKEACGYDGGDCCSCTCESVWDDDYTCG-EDAFFDCKDPSAACFGEETAMGNGDDSTGRSSDPDTEYEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTL 249

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BLAST of Ec-00_002480.2 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 2.490e-97
Identity = 155/221 (70.14%), Postives = 173/221 (78.28%), Query Frame = 1

Query:  121 FACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEEN--NNELCAYDGGDCCECTCESAWN--DDYTCSSEHGIFNCKDPNASCFGEETTGSDDFSTDD--QPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRP----GDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL 753
            FACIDP A CV+DD +TVDM  NC+Y   +GNGW          +  YDGGDCC CTC++AW+  DDY+CSSE+   +CKDP ASCFGE TTGSDDF+  D  QP SYEFV WEETE+LPTV  AVEVGTKTEVGVS+TAHDVRP     D GCG+VGGLGCTA NTRDGI S+IESRWSCAT LV DEG CQIEF+FAEPQ +VDIQVAFWKGNERTRTL
Sbjct:  334 FACIDPEAACVNDDDITVDMFVNCEYPVDIGNGWLRWRRLLRVHMRGYDGGDCCSCTCQNAWDWDDDYSCSSEYNSLDCKDPTASCFGEGTTGSDDFTFHDDYQPTSYEFVHWEETESLPTVIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTL 554

The following BLAST results are available for this feature:

BLAST of Ec-00_002480.2 vs. uniprot

BLAST of Ec-00_002480.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G4F9_ECTSI	1.440e-163	99.55	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FL19_ECTSI	8.060e-145	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G3F4_ECTSI	5.170e-133	85.58	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KB04_9PHAE	1.350e-125	81.40	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXR2_9PHAE	4.040e-124	75.85	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G5F4_ECTSI	5.710e-121	99.40	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FI88_ECTSI	5.030e-119	76.96	Similar to Pappalysin-2 (Pregnancy-associated plas...	[more]
A0A6H5JM92_9PHAE	2.160e-112	75.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G0S3_ECTSI	2.060e-106	70.32	LNR domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FI87_ECTSI	2.490e-97	70.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:2722369..2724721 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	826
Hectar predicted targeting category	mitochondrion
Gene id	Ec-00_002480.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480	Ec-00_002480	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 2722369..2724721 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480.2	Ec-00_002480.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 2723459..2724652 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480.2.1	Ec-00_002480.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2722369..2722423 +
Ec-00_002480.2.2	Ec-00_002480.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2722749..2722786 +
Ec-00_002480.2.3	Ec-00_002480.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2723335..2723497 +
Ec-00_002480.2.4	Ec-00_002480.2.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2724152..2724721 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480	5UTR:Ec-00_002480.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 2722369..2722423 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480.2	CDS:Ec-00_002480.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 2723459..2723497 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002480	3UTR:Ec-00_002480.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 2724653..2724721 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:2722369..2724721+
coding sequence from alignment at chr_00:2722369..2724721+

mRNA sequence

>Ec-00_002480.2 ID=Ec-00_002480.2|Name=Ec-00_002480.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=180bp
MAGVTKRTTTSYARTMAATAASARARALGMTTTPAAASTASSTAKTRTPP
ASAKKLLGAMTSAPTTSQCRTNLSPGKRQRPCRRSTVLLRWAPRPRWAYH
LPPTTCGPATTGAERSAALAARRPTPVMEFSPRSSRGGRAPRSSWMTKGR
ARSSSPLPNPRPLWTSRLPSGRETSAPVP*

spliced messenger RNA

>Ec-00_002480.2 ID=Ec-00_002480.2|Name=Ec-00_002480.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=826bp|location=Sequence derived from alignment at chr_00:2722369..2724721+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCTGTCGGTATGGGCGACGGCTACTGTGACATGGACAACAACAACGCAGC
CTGCGCTTACGATGGCGGCGACTGCTGCGAGTGCACGTGCGAGCCAAACA
ACAAGTGCGGTGGGAGGAGCGGCTTCGCCTGCATCGACCCTGGAGCACCC
TGCGTCGATGACGATTCAGTCACCGTGGATATGATCGACAACTGCGACTA
CCTACGGGTAATGGGGAATGGCTGGTGTGACGAAGAGAACAACAACGAGC
TATGCGCGTACGATGGCGGCGACTGCTGCGAGTGCACGTGCGAGAGCGCT
TGGAATGACGACTACACCTGCAGCAGCGAGCACGGCATCTTCAACTGCAA
AGACCCGAACGCCTCCTGCTTCGGCGAAGAAACTACTGGGAGCGATGACT
TCAGCACCGACGACCAGCCAATGTCGTACGAATTTGTCCCCTGGGAAGAG
ACAGAGGCCCTGCCGACGGTCGACGGTGCTGTTGAGGTGGGCACCAAGAC
CGAGGTGGGCGTATCATCTACCGCCCACGACGTGCGGCCCGGCGACGACG
GGTGCGGAGAGGTCGGCGGCCTTGGCTGCACGGCGGCCAACACCCGTGAT
GGAATTTTCTCCGAGATCGAGTCGAGGTGGTCGTGCGCCACGAAGCTCGT
GGATGACGAAGGGCCGTGCCAGATCGAGTTCACCTTTGCCGAACCCCAGA
CCATTGTGGACATCCAGGTTGCCTTCTGGAAGGGAAACGAGCGCACCCGT
ACCCTAGAGGTGAGGGCGACACCCAGCAGGCTGAAGATCACCGAAACAAC
AAGCCCTCTATTTTAGTTACTGGTAG

protein sequence of Ec-00_002480.2

>Ec-00_002480.2 ID=Ec-00_002480.2|Name=Ec-00_002480.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=180bp
MAGVTKRTTTSYARTMAATAASARARALGMTTTPAAASTASSTAKTRTPP
ASAKKLLGAMTSAPTTSQCRTNLSPGKRQRPCRRSTVLLRWAPRPRWAYH
LPPTTCGPATTGAERSAALAARRPTPVMEFSPRSSRGGRAPRSSWMTKGR
ARSSSPLPNPRPLWTSRLPSGRETSAPVP*

mRNA from alignment at chr_00:2722369..2724721+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_002480.2 ID=Ec-00_002480.2|Name=Ec-00_002480.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2353bp|location=Sequence derived from alignment at chr_00:2722369..2724721+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCTGTCGGTATGGGCGACGGCTACTGTGACATGGACAACAACAACGCAGC
CTGCGGTGCGTGCTCATGGCTCTCGTGTACGGTAGATTGTCTTGCCTATA
TTGCCAGCAGGCCATGAAAGGTGCAAGCCCTGTATCATTTTTGCCACCCA
GGCGGAATCAAATGGCGGAAAGAAAATGATGGAAAGGCGAGAGCCATGTC
AAGAAAACGTGGAAGCCCGAATTCGACTGTGACACGCGGGCGGTAACGTA
CGTGAAACACTGCTGTCCAATGACAGAGAGGGCGTGGTGTGGTATGGTGT
GGTGTAATGTGATGTTTACAGAATAATTCTCCTCAACCGTTCGTGTTGCG
TATGCTCCCCCCGCCCCGAACTATCCTCAGCTTACGATGGCGGCGACTGC
TGCGAGTGCACGTGCGAGGTATGGGAATGATTTCTTCTCCTTGCCCATTC
TAGGCGAAACGCTTTGAAAGGCATGAGGCTGCTCTCAACGAGATGGTTCC
AACATTGCCGTTTTTCGACCCCGCCACTGTTGCTACTGCTGTGGAGTTAT
CCGAGCTTTGAAATTCGGGCCAGGGGGTGCGAGGTCTGATACCTTGTGTC
GCCAACGGTAGCGCCTCACAGCCGTCTCCGGGAGCATGCAAAGCAATGTA
GCCGCTTGAAAACCAGTCAGTGCAAGGAATGGAGCACGGAGTAAACGAGC
CTCACGCTCCGTTGCTTGGATGCGTGGCACGTACCCTTCGTGCCGCCCGC
CAAACACCTCGCGGCGTTTCGCCCAGTGGTAGTATGCCTTCCATGTCGAC
AAAACCCCGTCCGATGTTCCATCCCGGTGCTATGGTTTGTGGTGTCAGTA
GTACGGCCAGGCGTGATGGTGACGTCGCTGTCCCTGGCGCTTTGTTACTC
GATCTCTTGCACGTGTTCGCGCGTTTTTCCGGCTAACATATTGCTACGCA
TGTGCCTGTCGACAAGCCAAACAACAAGTGCGGTGGGAGGAGCGGCTTCG
CCTGCATCGACCCTGGAGCACCCTGCGTCGATGACGATTCAGTCACCGTG
GATATGATCGACAACTGCGACTACCTACGGGTAATGGGGAATGGCTGGTG
TGACGAAGAGAACAACAACGAGCTATGCGGTAAGCCTCGTGGTTCTATTT
AGTATCGGAAGGCGGTGATTTGCTGCTTCTTGAAAACGTTCACCACCGTG
CTGGAGCAGGCGCTGTCCCAAGCAGAATAGGCCGCGACAGTCAACCTTGT
CAAGCAACATTGCTCGCCCAACTGGCTGAATCCCTTCTTGTTTGATGCGT
CCGGATGGGTTTTCAGTGAATCAAGTAGTGTAGCTCGTTCGACACTTCCC
AGAAATCGCAGGCGTTGCCGTCTCAAGCGAATGCCTATGCATGGAAAATA
CGGGGTGTCGTTGGCGCTCTGCCCCATGTATCCTTCCCGCGTTGGTTGTC
TCAAGACCAAGCTATGCATGTAGCGCTACTGGCCAAGAAACAACCTCTGT
CGTTCTGTCCTCTGTGTTTCTCTGCTTCTTTCTTTGATCTGTGCATGTTG
GCAACAAATGCGCGGAAGCGATTCTGTGGGCGTCTATTTGTTTGAAGTTG
ATGGTGCCGATGCCATTACTTCCGCTCGCCCATTTCGGTGTTGTACTGGC
ATGCGAGATTTGCCGCATGCAAACAAACTATTTCCGCAGGGATCAGGCTC
AACCAGCCAACAGCGACCGCTTCCCCTTCTCCTCTTTGCCTTGTAATTCC
CCCTCGCTGTTGAACTATCCTTCTGTTCCTCAGCGTACGATGGCGGCGAC
TGCTGCGAGTGCACGTGCGAGAGCGCTTGGAATGACGACTACACCTGCAG
CAGCGAGCACGGCATCTTCAACTGCAAAGACCCGAACGCCTCCTGCTTCG
GCGAAGAAACTACTGGGAGCGATGACTTCAGCACCGACGACCAGCCAATG
TCGTACGAATTTGTCCCCTGGGAAGAGACAGAGGCCCTGCCGACGGTCGA
CGGTGCTGTTGAGGTGGGCACCAAGACCGAGGTGGGCGTATCATCTACCG
CCCACGACGTGCGGCCCGGCGACGACGGGTGCGGAGAGGTCGGCGGCCTT
GGCTGCACGGCGGCCAACACCCGTGATGGAATTTTCTCCGAGATCGAGTC
GAGGTGGTCGTGCGCCACGAAGCTCGTGGATGACGAAGGGCCGTGCCAGA
TCGAGTTCACCTTTGCCGAACCCCAGACCATTGTGGACATCCAGGTTGCC
TTCTGGAAGGGAAACGAGCGCACCCGTACCCTAGAGGTGAGGGCGACACC
CAGCAGGCTGAAGATCACCGAAACAACAAGCCCTCTATTTTAGTTACTGG
TAG

Coding sequence (CDS) from alignment at chr_00:2722369..2724721+

>Ec-00_002480.2 ID=Ec-00_002480.2|Name=Ec-00_002480.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=540bp|location=Sequence derived from alignment at chr_00:2722369..2724721+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTGGTGTGACGAAGAGAACAACAACGAGCTATGCGCGTACGATGGC
GGCGACTGCTGCGAGTGCACGTGCGAGAGCGCTTGGAATGACGACTACAC
CTGCAGCAGCGAGCACGGCATCTTCAACTGCAAAGACCCGAACGCCTCCT
GCTTCGGCGAAGAAACTACTGGGAGCGATGACTTCAGCACCGACGACCAG
CCAATGTCGTACGAATTTGTCCCCTGGGAAGAGACAGAGGCCCTGCCGAC
GGTCGACGGTGCTGTTGAGGTGGGCACCAAGACCGAGGTGGGCGTATCAT
CTACCGCCCACGACGTGCGGCCCGGCGACGACGGGTGCGGAGAGGTCGGC
GGCCTTGGCTGCACGGCGGCCAACACCCGTGATGGAATTTTCTCCGAGAT
CGAGTCGAGGTGGTCGTGCGCCACGAAGCTCGTGGATGACGAAGGGCCGT
GCCAGATCGAGTTCACCTTTGCCGAACCCCAGACCATTGTGGACATCCAG
GTTGCCTTCTGGAAGGGAAACGAGCGCACCCGTACCCTAG

Synonyms

The feature 'Ec-00_002480.2' has the following synonyms


Synonym
Esi1517_0001
Esi_1517_0001