Ec-00_002450.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002450.1
Unique NameEc-00_002450.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length53
Homology
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BLAST of Ec-00_002450.1 vs. uniprot
Match: D7FL17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL17_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.230e-30
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 MDRGHDLGGLRSELLLPKSFECGISVDKMGITVRAACGKLDKLENLIVEQHF 156
            MDRGHDLGGLRSELLLPKSFECGISVDKMGITVRAACGKLDKLENLIVEQHF
Sbjct:    1 MDRGHDLGGLRSELLLPKSFECGISVDKMGITVRAACGKLDKLENLIVEQHF 52
The following BLAST results are available for this feature:
BLAST of Ec-00_002450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL17_ECTSI1.230e-30100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2709097..2709255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length159
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_002450.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002450Ec-00_002450Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2709097..2709255 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002450.1.1Ec-00_002450.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2709097..2709255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002450.1CDS:Ec-00_002450.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2709097..2709255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002450.1Ec-00_002450.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2709097..2709255 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002450.1 ID=Ec-00_002450.1|Name=Ec-00_002450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=53bp
MDRGHDLGGLRSELLLPKSFECGISVDKMGITVRAACGKLDKLENLIVEQ
HF*
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spliced messenger RNA

>Ec-00_002450.1 ID=Ec-00_002450.1|Name=Ec-00_002450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=159bp|location=Sequence derived from alignment at chr_00:2709097..2709255- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGAGGGCATGATCTAGGTGGGTTGCGATCAGAGCTGTTGCTTCC
GAAAAGTTTTGAATGTGGTATTTCGGTGGACAAGATGGGCATTACAGTAC
GCGCCGCCTGTGGCAAACTCGATAAGTTGGAAAACTTGATCGTCGAACAA
CATTTTTAG
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protein sequence of Ec-00_002450.1

>Ec-00_002450.1 ID=Ec-00_002450.1|Name=Ec-00_002450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=53bp
MDRGHDLGGLRSELLLPKSFECGISVDKMGITVRAACGKLDKLENLIVEQ
HF*
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mRNA from alignment at chr_00:2709097..2709255-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002450.1 ID=Ec-00_002450.1|Name=Ec-00_002450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=159bp|location=Sequence derived from alignment at chr_00:2709097..2709255- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACAGAGGGCATGATCTAGGTGGGTTGCGATCAGAGCTGTTGCTTCC
GAAAAGTTTTGAATGTGGTATTTCGGTGGACAAGATGGGCATTACAGTAC
GCGCCGCCTGTGGCAAACTCGATAAGTTGGAAAACTTGATCGTCGAACAA
CATTTTTAG
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Coding sequence (CDS) from alignment at chr_00:2709097..2709255-

>Ec-00_002450.1 ID=Ec-00_002450.1|Name=Ec-00_002450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=159bp|location=Sequence derived from alignment at chr_00:2709097..2709255- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACAGAGGGCATGATCTAGGTGGGTTGCGATCAGAGCTGTTGCTTCC
GAAAAGTTTTGAATGTGGTATTTCGGTGGACAAGATGGGCATTACAGTAC
GCGCCGCCTGTGGCAAACTCGATAAGTTGGAAAACTTGATCGTCGAACAA
CATTTTTAG
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Synonyms
The feature 'Ec-00_002450.1' has the following synonyms
Synonym
Esi1505_0001
Esi_1505_0001