Ec-00_002370.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002370.1
Unique NameEc-00_002370.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length133
Homology
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BLAST of Ec-00_002370.1 vs. uniprot
Match: D7FKK7_ECTSI (OTU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK7_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 3.040e-90
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 MVLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQSTFQLPVVDAGTREFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDNTLVSGVFIEMCGEGMEN 396
            MVLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQSTFQLPVVDAGTREFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDNTLVSGVFIEMCGEGMEN
Sbjct:    1 MVLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQSTFQLPVVDAGTREFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDNTLVSGVFIEMCGEGMEN 132
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BLAST of Ec-00_002370.1 vs. uniprot
Match: D7G8I7_ECTSI (OTU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I7_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.530e-76
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:    1 MVLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQSTFQLPVVDAGTREFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDNTLV 354
            MVLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQSTFQLPVVDAGTREFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDNTLV
Sbjct:    1 MVLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQSTFQLPVVDAGTREFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDNTLV 118
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BLAST of Ec-00_002370.1 vs. uniprot
Match: A0A6H5L7A1_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.150e-36
Identity = 76/110 (69.09%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:   37 MKKAKEAKPPTSPLILQLLIPKGMAQST-------------FQLPVVDAGTREFLPLDEEVNRRLLKQIDWSPPGSEPLT-----------RGLRPLKTRLFAMRAKGDG 294
            MKKAK AKPPTSPLILQLLIPKGMAQ                QLPVVDAGTRE LPL+EEVNRRLLKQIDW+PPGSEPLT           RG+RPLK+RLFAMRAKG G
Sbjct:    1 MKKAKGAKPPTSPLILQLLIPKGMAQPASAVGYILSHKVEHLQLPVVDAGTRESLPLEEEVNRRLLKQIDWAPPGSEPLTSPSLRADPRAHRGVRPLKSRLFAMRAKGTG 110
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BLAST of Ec-00_002370.1 vs. uniprot
Match: R7UHH9_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UHH9_CAPTE)

HSP 1 Score: 51.6 bits (122), Expect = 6.150e-5
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:  106 MAQSTFQLPVVDAGTREFLPLDEEVNRRLLK---QIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDNTLV 354
            +A  T QLP +     E   L + V +RLL    Q     PG     R +RPL    +A+R KGDGNCL HAVS+++WG  D +++
Sbjct:   42 IASRTIQLPDLSGCPEE---LGQCVQKRLLDENMQEALEGPGVLNWCRNIRPL----YALRTKGDGNCLLHAVSVAMWGMEDTSML 120
The following BLAST results are available for this feature:
BLAST of Ec-00_002370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKK7_ECTSI3.040e-90100.00OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G8I7_ECTSI1.530e-76100.00OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7A1_9PHAE6.150e-3669.09OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
R7UHH9_CAPTE6.150e-539.53Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2630825..2631568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.4
Seed ortholog evalue5e-61
Seed eggNOG ortholog2880.D7G8I7
Preferred nameZRANB1
Length399
KEGG koko:K11860,ko:K11862
Hectar predicted targeting categoryother localisation
Gene idEc-00_002370.1
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016043,GO:0016477,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0021551,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0030111,GO:0030163,GO:0030177,GO:0031593,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035523,GO:0036211,GO:0036459,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051603,GO:0051674,GO:0060322,GO:0060828,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071947,GO:0090263,GO:0101005,GO:0140030,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990168
EggNOG free text desc.protein deubiquitination involved in ubiquitin-dependent protein catabolic process
EggNOG OGsKOG4345@1,KOG4345@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002370Ec-00_002370Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2630825..2631568 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002370.1.1Ec-00_002370.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2630825..2630938 +
Ec-00_002370.1.2Ec-00_002370.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2631151..2631275 +
Ec-00_002370.1.3Ec-00_002370.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2631409..2631568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002370.1CDS:Ec-00_002370.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2630825..2630938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002370.1Ec-00_002370.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2630825..2631568 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002370.1 ID=Ec-00_002370.1|Name=Ec-00_002370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=133bp
MVLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQSTFQLPVVDAGT
REFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNC
LPHAVSLSLWGHGDNTLVSGVFIEMCGEGMEN*
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spliced messenger RNA

>Ec-00_002370.1 ID=Ec-00_002370.1|Name=Ec-00_002370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=399bp|location=Sequence derived from alignment at chr_00:2630825..2631568+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTCGAAACCAAGCAGCCGATACTAGACCAGATGAAGAAAGCTAA
GGAGGCGAAACCGCCGACCAGCCCCCTGATCTTACAGCTGCTGATCCCTA
AAGGGATGGCACAGAGCACCTTTCAGCTGCCTGTGGTGGACGCTGGAACC
CGCGAGTTCTTGCCGCTGGACGAGGAGGTCAACAGACGGCTGTTGAAGCA
AATCGACTGGTCGCCGCCCGGCTCTGAGCCTCTAACAAGAGGGCTCCGCC
CTTTGAAGACAAGGCTGTTCGCGATGAGGGCAAAGGGAGATGGGAACTGT
CTGCCTCACGCTGTTTCACTGTCGCTGTGGGGCCATGGAGACAACACGCT
GGTGAGCGGTGTGTTCATCGAGATGTGCGGAGAGGGAATGGAGAACTGA
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protein sequence of Ec-00_002370.1

>Ec-00_002370.1 ID=Ec-00_002370.1|Name=Ec-00_002370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=133bp
MVLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQSTFQLPVVDAGT
REFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNC
LPHAVSLSLWGHGDNTLVSGVFIEMCGEGMEN*
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mRNA from alignment at chr_00:2630825..2631568+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002370.1 ID=Ec-00_002370.1|Name=Ec-00_002370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=744bp|location=Sequence derived from alignment at chr_00:2630825..2631568+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTCCTCGAAACCAAGCAGCCGATACTAGACCAGATGAAGAAAGCTAA
GGAGGCGAAACCGCCGACCAGCCCCCTGATCTTACAGCTGCTGATCCCTA
AAGGGATGGCACAGGTGAGTCTGACGATAGAGTTGTTTTCTCACGTAGCA
CTACTTCAATCCTCATTAAACCCAGAGATGCACGGCCCGTTCCGTCGTGA
CAAAACCCATCTCAGCCTGCTCCGGCCGTGGGGTATGTCCTCAGCCAAGG
TAGGTGTGCCGCAGATTACGTCCAAGATTTTTTGCGCGCCTCTGTTCCGT
CTTCGGCCATACGTTTGAAATCGCAGAGCACCTTTCAGCTGCCTGTGGTG
GACGCTGGAACCCGCGAGTTCTTGCCGCTGGACGAGGAGGTCAACAGACG
GCTGTTGAAGCAAATCGACTGGTCGCCGCCCGGCTCTGAGCCTCTAACAA
GGTGCGGGTGTTTTTCCGTGCCCTTGTTCGGCTTGACTCGGTGCTCACGA
GTTGTGGCGCTCGCAAGAGAGGAACACCGCTTTGTTTTGTCCCAACCGTA
GCCCCTCGCTCCGGGCCGACCCACGCGCGTACAGAGGGCTCCGCCCTTTG
AAGACAAGGCTGTTCGCGATGAGGGCAAAGGGAGATGGGAACTGTCTGCC
TCACGCTGTTTCACTGTCGCTGTGGGGCCATGGAGACAACACGCTGGTGA
GCGGTGTGTTCATCGAGATGTGCGGAGAGGGAATGGAGAACTGA
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Coding sequence (CDS) from alignment at chr_00:2630825..2631568+

>Ec-00_002370.1 ID=Ec-00_002370.1|Name=Ec-00_002370.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=399bp|location=Sequence derived from alignment at chr_00:2630825..2631568+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTCCTCGAAACCAAGCAGCCGATACTAGACCAGATGAAGAAAGCTAA
GGAGGCGAAACCGCCGACCAGCCCCCTGATCTTACAGCTGCTGATCCCTA
AAGGGATGGCACAGAGCACCTTTCAGCTGCCTGTGGTGGACGCTGGAACC
CGCGAGTTCTTGCCGCTGGACGAGGAGGTCAACAGACGGCTGTTGAAGCA
AATCGACTGGTCGCCGCCCGGCTCTGAGCCTCTAACAAGAGGGCTCCGCC
CTTTGAAGACAAGGCTGTTCGCGATGAGGGCAAAGGGAGATGGGAACTGT
CTGCCTCACGCTGTTTCACTGTCGCTGTGGGGCCATGGAGACAACACGCT
GGTGAGCGGTGTGTTCATCGAGATGTGCGGAGAGGGAATGGAGAACTGA
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Synonyms
The feature 'Ec-00_002370.1' has the following synonyms
Synonym
Esi1456_0001
Esi_1456_0001