Ec-00_002280.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_002280.2 vs. uniprot
Match: D7FK67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK67_ECTSI) HSP 1 Score: 230 bits (587), Expect = 6.270e-68 Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 3 Query: 405 LSCINADTGCSFDFGDCASGGSRAISDSDATTDTDSAGYLTTSTTXXXXXTIYTSMXXSETECATEVEACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLSDLLA 776 L+CINADTGCSFDFGDCASGGSRAISDSDATTDTDSAGYLTTSTTXXXXXTIYTSMXXSETECATEVEACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLSDLLA Sbjct: 190 LACINADTGCSFDFGDCASGGSRAISDSDATTDTDSAGYLTTSTTXXXXXTIYTSMXXSETECATEVEACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLSDLLA 313
BLAST of Ec-00_002280.2 vs. uniprot
Match: D7FTV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV3_ECTSI) HSP 1 Score: 231 bits (589), Expect = 9.280e-67 Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 1 Query: 22 LALPVLSACINSDSPCSVDIGDCASDGSRAISDSDTTTDTDSAGYLTTSTXXXXTDTIYTSMTXXETECATEVVACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLNDLLA 411 +AL L ACINSDSPCSVDIGDCASDGSRAISDSDTTTDTDSAGYLTTSTXXXXTDTIYTSMTXXETECATEVVACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLNDLLA Sbjct: 202 VALNDLLACINSDSPCSVDIGDCASDGSRAISDSDTTTDTDSAGYLTTSTXXXXTDTIYTSMTXXETECATEVVACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLNDLLA 331
BLAST of Ec-00_002280.2 vs. uniprot
Match: A0A6H5JWN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN7_9PHAE) HSP 1 Score: 202 bits (513), Expect = 9.320e-55 Identity = 105/136 (77.21%), Postives = 113/136 (83.09%), Query Frame = 1 Query: 22 LALPVLSACINSDSPCSVDIGDCASDGSRAISDSDTTTDTDSAGYLTTSTXXXXTDTIYTSMTXXETECATEVVACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLNDLLAASMRIL 429 +AL L AC+NSDSPCS+DIGDCASDGSR SDTTTDTDSAGYLTT T TD++Y SMT ETECA EV ACNDDTECVDC TSYAALVEGC+ SAGGTTCDDLEGAVCCAVDGCEDND LNDLL A + +L Sbjct: 202 VALNDLLACLNSDSPCSIDIGDCASDGSRGNYGSDTTTDTDSAGYLTTPTITPTTDSMYPSMTTSETECAIEVEACNDDTECVDCATSYAALVEGCIESAGGTTCDDLEGAVCCAVDGCEDNDALNDLLGAFLVVL 337
BLAST of Ec-00_002280.2 vs. uniprot
Match: D7FTV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV5_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.150e-36 Identity = 80/128 (62.50%), Postives = 92/128 (71.88%), Query Frame = 1 Query: 25 ALPVLSACINSDSPCSVDIGDCASDGSRAISDSDTTTDTDSAGYLTTSTXXXXTDTIYTSMTXXETECATEVVACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLNDLL 408 AL L CIN++S CS+DIGDCA DGSR ISDSDTTTDTD A TT TD+ YTSMT ET+C TE+ ACN D ECV C SY V+GC + G+TCDD+E AVCCAVDGCEDN+ L+DLL Sbjct: 204 ALNDLLVCINAESTCSIDIGDCAEDGSRGISDSDTTTDTDDAVIDTT------TDSPYTSMTTSETDCPTEISACNADDECVTCTQSYVEAVDGCFAAVTGSTCDDVEEAVCCAVDGCEDNEALSDLL 325
BLAST of Ec-00_002280.2 vs. uniprot
Match: A0A6H5JW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW24_9PHAE) HSP 1 Score: 150 bits (380), Expect = 5.070e-36 Identity = 84/108 (77.78%), Postives = 87/108 (80.56%), Query Frame = 1 Query: 4 LANHLVLALPVLSACINSDSPCSVDIGDCASDGSRAISDSDTTTDTDSAGYLTTSTXXXXTDTIYTSMTXXETECATEVVACNDDTECVDCFTSYAALVEGCLVSAGG 327 LA+HLVLALPVLSAC NSDSP SVDI D ASDGSR I SDTTTDT+SA YLTT T TDT+YTSMT E ECA EV ACNDDTECVDC TSYAALVEGCL S GG Sbjct: 27 LASHLVLALPVLSACKNSDSPYSVDIRDYASDGSRGIYGSDTTTDTESADYLTTPTTTCITDTMYTSMTTSEAECAIEVEACNDDTECVDCATSYAALVEGCLESVGG 134
BLAST of Ec-00_002280.2 vs. uniprot
Match: D7FTV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV4_ECTSI) HSP 1 Score: 114 bits (284), Expect = 9.830e-25 Identity = 67/142 (47.18%), Postives = 77/142 (54.23%), Query Frame = 3 Query: 354 CVLCGGWLRGQRWAQ*PLSCINADTGCS-FDFGDCASGGSRAISDSDATTDTDSAGYLTTSTTXXXXXTIYTSMXXSETECATEVEACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLSDLLA 776 C G + +A + CIN D GC D GDCA GGS AIS SD T XX T+C TE+ ACN D ECV C SY VEGC SA G+TCDD+E +VCCAVDGCEDN+ L+DLLA Sbjct: 104 CCAAEGCEDNEEFAD-IMGCINGDLGCGVIDIGDCAGGGSTAISGSDTT---------------------XXXXXXXXTDCPTEISACNADDECVTCTQSYVDAVEGCFASATGSTCDDVEESVCCAVDGCEDNEALNDLLA 223
BLAST of Ec-00_002280.2 vs. uniprot
Match: A0A6H5K6K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K1_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.480e-21 Identity = 65/142 (45.77%), Postives = 74/142 (52.11%), Query Frame = 3 Query: 354 CVLCGGWLRGQRWAQ*PLSCINADTGCS-FDFGDCASGGSRAISDSDATTDTDSAGYLTTSTTXXXXXTIYTSMXXSETECATEVEACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLSDLLA 776 C G + +A + CIN D GC D GDCA GGS AIS S XX C TE+ ACN D+ECV C SY VEGC SA G+TCDD+E AVCCAVDGCEDN+ L+DLLA Sbjct: 95 CCAAEGCEDNEEFAD-IMGCINGDLGCGVIDIGDCAGGGSTAISGSXX---------------------XXXXXXXXXXXCPTEISACNADSECVTCTQSYVDAVEGCFESATGSTCDDVEEAVCCAVDGCEDNEALNDLLA 214
BLAST of Ec-00_002280.2 vs. uniprot
Match: D7FTV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV6_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 1.960e-6 Identity = 54/140 (38.57%), Postives = 71/140 (50.71%), Query Frame = 1 Query: 55 SDSPCSVDIGDCASDGSRAISDSDT------TTDTDSAGY------LTTSTXXXXTDTIYTSMTXXETECATEVVACNDDTECVDCFTSYAALVEGCLVS---AGGTTCDDLEGAVCCAVDG---CEDNDGLNDLLAASM 420 +DS C+V++G CA DGSRAIS SDT TTDT G TT+T +D++ SMT C E AC D C+ C + + E C S + TCD+ + A CCA++G CE+N L L SM Sbjct: 431 ADSECAVEVGACAEDGSRAISGSDTSTDSISTTDTXXXGNSSVVFPTTTTTSAFSSDSV--SMTNDTAICVAENDACTADPTCLACAGAILSSQEVCQGSDFDSETATCDEKQEANCCALEGGTDCENNVLLGALYDCSM 568 The following BLAST results are available for this feature:
BLAST of Ec-00_002280.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_002280.2 ID=Ec-00_002280.2|Name=Ec-00_002280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=106bpback to top spliced messenger RNA >Ec-00_002280.2 ID=Ec-00_002280.2|Name=Ec-00_002280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1211bp|location=Sequence derived from alignment at chr_00:2563768..2566283+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. CCCCCTCGCAAACCACTTGGTGCTCGCGCTACCGGTCTTGTCAGCCTGCAback to top protein sequence of Ec-00_002280.2 >Ec-00_002280.2 ID=Ec-00_002280.2|Name=Ec-00_002280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=106bp MRILVAPSTLEIAHRAEAGPFLAPIPQPTPDPPPIHPPTPIPKSMLRPTLback to top mRNA from alignment at chr_00:2563768..2566283+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_002280.2 ID=Ec-00_002280.2|Name=Ec-00_002280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2516bp|location=Sequence derived from alignment at chr_00:2563768..2566283+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:2563768..2566283+ >Ec-00_002280.2 ID=Ec-00_002280.2|Name=Ec-00_002280.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=318bp|location=Sequence derived from alignment at chr_00:2563768..2566283+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_002280.2' has the following synonyms
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