Ec-00_002240.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002240.1
Unique NameEc-00_002240.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length312
Homology
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BLAST of Ec-00_002240.1 vs. uniprot
Match: D8LLY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY1_ECTSI)

HSP 1 Score: 526 bits (1356), Expect = 4.760e-184
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 
Query:    1 MCAGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQLLAACRAAPRDKENEFPLGAAATATATAGDRSERLIGEHKGWEGEEGRQEAEEEEGEDGGRRSTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVCGMGNGSGGEDANEPASSVSSEPISSATAGVREGDRQSRERESDGDAEESRFGGLLLRKQPTAADDKDGGEDNGGGQGRWEHHFDGRMDEDSYDFSENVESVRGGGE 828
            MCAGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQLLAACRAAPRDKENEFPLGAAATATATAGDRSERLIGEHKGWEGEEGRQEAEEEEGEDGGRRSTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVCGMGNGSGGEDANEPASSVSSEPISSATAGVREGDRQSRERESDGDAEESRFGGLLLRKQPTAADDKDGGEDNGGGQGRWEHHFDGRMDEDSYDFSENVESVRGGGE
Sbjct:    1 MCAGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQLLAACRAAPRDKENEFPLGAAATATATAGDRSERLIGEHKGWEGEEGRQEAEEEEGEDGGRRSTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVCGMGNGSGGEDANEPASSVSSEPISSATAGVREGDRQSRERESDGDAEESRFGGLLLRKQPTAADDKDGGEDNGGGQGRWEHHFDGRMDEDSYDFSENVESVRGGGE 276
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BLAST of Ec-00_002240.1 vs. uniprot
Match: A0A6H5JFJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ8_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 1.690e-142
Identity = 233/273 (85.35%), Postives = 242/273 (88.64%), Query Frame = 1 
Query:   10 GRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQLLAACRAAPRDKENEFPLGAAATATATAGDRSERLIGEHKGWEGEEGRQEAEEEEGEDGGRRSTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVCGMGNGSGGEDANEPASSVSSEPISSATAGVREGDRQSRERESDGDAEESRFGGLLLRKQPTAADDKDGGEDNGGGQGRWEHHFDGRMDEDSYDFSENVESVRGGGE 828
            GRL+LQVVADFLEHWELHQTLSVLKLETDMATED LSTEELGSIVANGA VGKGE KTP+GK SPVMLQLLAACRAAPRD+EN  PLGAAA       DRSERLIGE KG + EEGRQEAEE E EDGGRR TTWRGVGVEGDGVPPRVTLRKRRGDHGGT+GTSV GMGNGSGGEDANEPA SV SEP+SSATAG REGDRQSRERE+DGDAEESRFGGLLLR+QPTAADD   GED  GGQ RWEHHFDGRMDE SYDFSENVESV+G GE
Sbjct:   61 GRLALQVVADFLEHWELHQTLSVLKLETDMATEDFLSTEELGSIVANGAAVGKGETKTPDGKPSPVMLQLLAACRAAPRDRENGLPLGAAAA------DRSERLIGEDKGRKEEEGRQEAEEGE-EDGGRRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGTSGTSVSGMGNGSGGEDANEPAWSVPSEPVSSATAGEREGDRQSRERENDGDAEESRFGGLLLREQPTAADDIYRGEDKSGGQDRWEHHFDGRMDESSYDFSENVESVKGAGE 326
[Close]
BLAST of Ec-00_002240.1 vs. uniprot
Match: D7FK22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK22_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.540e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 MCAGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQ 216
            MCAGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQ
Sbjct:    1 MCAGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQ 72
The following BLAST results are available for this feature:
BLAST of Ec-00_002240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLY1_ECTSI4.760e-184100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFJ8_9PHAE1.690e-14285.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK22_ECTSI3.540e-40100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2544377..2546110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length936
Gene idEc-00_002240.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002240Ec-00_002240Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2544377..2546110 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002240.1.3Ec-00_002240.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2544377..2544837 -
Ec-00_002240.1.2Ec-00_002240.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2545122..2545380 -
Ec-00_002240.1.1Ec-00_002240.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2545895..2546110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002240.1CDS:Ec-00_002240.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2544377..2544837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002240.1Ec-00_002240.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2544377..2546110 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002240.1 ID=Ec-00_002240.1|Name=Ec-00_002240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=312bp
MCAGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVAN
GAVVGKGEMKTPEGKTSPVMLQLLAACRAAPRDKENEFPLGAAATATATA
GDRSERLIGEHKGWEGEEGRQEAEEEEGEDGGRRSTTWRGVGVEGDGVPP
RVTLRKRRGDHGGTNGTSVCGMGNGSGGEDANEPASSVSSEPISSATAGV
REGDRQSRERESDGDAEESRFGGLLLRKQPTAADDKDGGEDNGGGQGRWE
HHFDGRMDEDSYDFSENVESVRGGGEXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXN*
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spliced messenger RNA

>Ec-00_002240.1 ID=Ec-00_002240.1|Name=Ec-00_002240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=936bp|location=Sequence derived from alignment at chr_00:2544377..2546110- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCAGGCCGCCTGTCGCTGCAAGTCGTGGCCGACTTTTTGGAGCA
CTGGGAGCTGCACCAGACCCTTTCCGTCCTCAAGCTGGAGACAGACATGG
CGACAGAGGACCTCTTGTCGACAGAGGAGCTCGGGTCTATCGTGGCGAAT
GGTGCCGTGGTGGGAAAGGGCGAGATGAAGACGCCTGAGGGAAAAACCTC
GCCGGTGATGCTCCAGCTGCTAGCGGCGTGTCGGGCAGCACCTCGGGACA
AAGAAAATGAGTTTCCTCTAGGGGCCGCCGCCACCGCCACCGCCACCGCC
GGCGACCGGAGCGAGAGATTAATCGGCGAGCACAAGGGCTGGGAGGGGGA
AGAGGGCAGGCAGGAAGCGGAAGAAGAAGAAGGGGAAGACGGCGGACGGC
GGAGCACCACGTGGAGAGGAGTGGGCGTGGAAGGGGATGGCGTGCCGCCA
AGGGTCACGCTGAGGAAACGAAGAGGAGACCACGGTGGAACCAATGGCAC
CAGCGTTTGCGGCATGGGCAACGGCAGCGGAGGAGAAGACGCCAACGAAC
CGGCCTCGAGCGTTTCGTCTGAACCAATATCGTCGGCGACGGCAGGAGTA
AGAGAAGGCGACCGGCAGAGCCGGGAACGGGAGAGCGACGGCGACGCCGA
GGAGAGCCGGTTTGGCGGGCTGCTACTACGCAAACAACCTACAGCTGCCG
ATGACAAGGACGGCGGGGAAGACAACGGGGGGGGACAGGGCAGGTGGGAG
CACCACTTTGACGGGAGAATGGACGAGGACTCTTACGACTTCTCGGAGAA
CGTTGAGTCTGTCAGGGGGGGCGGTGAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATTAG
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protein sequence of Ec-00_002240.1

>Ec-00_002240.1 ID=Ec-00_002240.1|Name=Ec-00_002240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=312bp
MCAGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVAN
GAVVGKGEMKTPEGKTSPVMLQLLAACRAAPRDKENEFPLGAAATATATA
GDRSERLIGEHKGWEGEEGRQEAEEEEGEDGGRRSTTWRGVGVEGDGVPP
RVTLRKRRGDHGGTNGTSVCGMGNGSGGEDANEPASSVSSEPISSATAGV
REGDRQSRERESDGDAEESRFGGLLLRKQPTAADDKDGGEDNGGGQGRWE
HHFDGRMDEDSYDFSENVESVRGGGEXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXN*
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mRNA from alignment at chr_00:2544377..2546110-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002240.1 ID=Ec-00_002240.1|Name=Ec-00_002240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1734bp|location=Sequence derived from alignment at chr_00:2544377..2546110- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGTGCAGGCCGCCTGTCGCTGCAAGTCGTGGCCGACTTTTTGGAGCA
CTGGGAGCTGCACCAGACCCTTTCCGTCCTCAAGCTGGAGACAGACATGG
CGACAGAGGACCTCTTGTCGACAGAGGAGCTCGGGTCTATCGTGGCGAAT
GGTGCCGTGGTGGGAAAGGGCGAGATGAAGACGCCTGAGGGAAAAACCTC
GCCGGTGATGCTCCAGGTGTGACATATGCAACGCGATACAACTGCTTGGG
CTTCTGTGTCGTGGTGTGTATTGTCAATGCCAACCGGCGATCAATACAAT
ATACAGCCCCGACAAAGTACATCCCCACGGAACAAACTAGAGCGGCATGA
ATGCTTGCTCAACCTGTCCTTTGCCCCTGAGACTAGAGGAGGTATCGGTT
GTTCGCGATTTATCGCCCCAAGTGCTTTCGGTTGTTTCGTCAACTCCTGA
TTCGCCTCTCGGTAAGGACCCTTGCCCGATGGGCGTGAACAACACGCCAT
GTACAAGCTGCAGATAGACGAGCAAGCCCAGAGTGGTACACCAGTAGTGT
CCCACCTACAGCCACCCACGCGGTGCTTGACGTGCGCGTTGTGCTCGACA
ACCCCCGCCCCCGAAGCACCGCCTCTTTCTGTAATCCTTCTGCGACAAGC
AATTTTGATCCGCTTTCGTGCCCGTCTGTCGTGTATGGATCCAATCTGTC
TTGACACCCCCCCCCCACGCTTGAGAAAAGCTGCTAGCGGCGTGTCGGGC
AGCACCTCGGGACAAAGAAAATGAGTTTCCTCTAGGGGCCGCCGCCACCG
CCACCGCCACCGCCGGCGACCGGAGCGAGAGATTAATCGGCGAGCACAAG
GGCTGGGAGGGGGAAGAGGGCAGGCAGGAAGCGGAAGAAGAAGAAGGGGA
AGACGGCGGACGGCGGAGCACCACGTGGAGAGGAGTGGGCGTGGAAGGGG
ATGGCGTGCCGCCAAGGGTCACGCTGAGGAAACGAAGAGGTTAGCAAGAT
GCGGCTCGTGGTGGTTGATGTCGACGTGATGTTGATACCAATGTTGATAT
TGTCGCTGATGCTGCTGTACTGTCCGCATTGCCTTACTTGGTTGGAATGC
CCAAGTGTGGCTCGAATCGGTACATAGCGCTTCTTTTAGGATGGAAGAGT
TATAGCGGTTTCCGCAACGTCGAAACGTGGAGAATCCCGTGGTCATGTCC
TGTCCCGTTTCGTGTTCGCTCTCTCGAGAAATACATGAAAAACACGTCGC
CCTCTTCCATCTCCCGCCATCAGGAGACCACGGTGGAACCAATGGCACCA
GCGTTTGCGGCATGGGCAACGGCAGCGGAGGAGAAGACGCCAACGAACCG
GCCTCGAGCGTTTCGTCTGAACCAATATCGTCGGCGACGGCAGGAGTAAG
AGAAGGCGACCGGCAGAGCCGGGAACGGGAGAGCGACGGCGACGCCGAGG
AGAGCCGGTTTGGCGGGCTGCTACTACGCAAACAACCTACAGCTGCCGAT
GACAAGGACGGCGGGGAAGACAACGGGGGGGGACAGGGCAGGTGGGAGCA
CCACTTTGACGGGAGAATGGACGAGGACTCTTACGACTTCTCGGAGAACG
TTGAGTCTGTCAGGGGGGGCGGTGAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGCAATTAG
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Coding sequence (CDS) from alignment at chr_00:2544377..2546110-

>Ec-00_002240.1 ID=Ec-00_002240.1|Name=Ec-00_002240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=936bp|location=Sequence derived from alignment at chr_00:2544377..2546110- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGTGCAGGCCGCCTGTCGCTGCAAGTCGTGGCCGACTTTTTGGAGCA
CTGGGAGCTGCACCAGACCCTTTCCGTCCTCAAGCTGGAGACAGACATGG
CGACAGAGGACCTCTTGTCGACAGAGGAGCTCGGGTCTATCGTGGCGAAT
GGTGCCGTGGTGGGAAAGGGCGAGATGAAGACGCCTGAGGGAAAAACCTC
GCCGGTGATGCTCCAGCTGCTAGCGGCGTGTCGGGCAGCACCTCGGGACA
AAGAAAATGAGTTTCCTCTAGGGGCCGCCGCCACCGCCACCGCCACCGCC
GGCGACCGGAGCGAGAGATTAATCGGCGAGCACAAGGGCTGGGAGGGGGA
AGAGGGCAGGCAGGAAGCGGAAGAAGAAGAAGGGGAAGACGGCGGACGGC
GGAGCACCACGTGGAGAGGAGTGGGCGTGGAAGGGGATGGCGTGCCGCCA
AGGGTCACGCTGAGGAAACGAAGAGGAGACCACGGTGGAACCAATGGCAC
CAGCGTTTGCGGCATGGGCAACGGCAGCGGAGGAGAAGACGCCAACGAAC
CGGCCTCGAGCGTTTCGTCTGAACCAATATCGTCGGCGACGGCAGGAGTA
AGAGAAGGCGACCGGCAGAGCCGGGAACGGGAGAGCGACGGCGACGCCGA
GGAGAGCCGGTTTGGCGGGCTGCTACTACGCAAACAACCTACAGCTGCCG
ATGACAAGGACGGCGGGGAAGACAACGGGGGGGGACAGGGCAGGTGGGAG
CACCACTTTGACGGGAGAATGGACGAGGACTCTTACGACTTCTCGGAGAA
CGTTGAGTCTGTCAGGGGGGGCGGTGAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATTAG
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Synonyms
The feature 'Ec-00_002240.1' has the following synonyms
Synonym
Esi1397_0001
Esi_1397_0001