Ec-00_002200.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_002200.1
Unique Name	Ec-00_002200.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	222

Homology

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BLAST of Ec-00_002200.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 453 bits (1166), Expect = 1.190e-160
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1

Query:    1 MGFYRRGRHGRKFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 663
            MGFYRRGRHGRKFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF
Sbjct:    1 MGFYRRGRHGRKFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221

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BLAST of Ec-00_002200.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 303 bits (777), Expect = 3.140e-100
Identity = 150/250 (60.00%), Postives = 182/250 (72.80%), Query Frame = 1

Query:   34 KFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF*RARYTPAH-VMVGEFWGVWYADGGSA-RTCDTRMVFCPE 777
            KFP   +  +G   L LC R  CLL+LY KQ   +++ R   +A+Q+ RH   W+  PEP  H KRR LDRYCT PEAVE L  AV + GCVLDMCGGP DA+A    +TC+V+TND+S+RLS G     TNLDASL SF  +F  A PG++PDWV+TSPPYKGA+ +VK+AL++A KGVALKLPLSFLEPCADRGGWL  NPPAVC+F  RA+YT AH V VGEFWGVWY DGG   ++  +R+VFCPE
Sbjct:   58 KFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAG-----TNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFCPE 302

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BLAST of Ec-00_002200.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 9.850e-99
Identity = 145/235 (61.70%), Postives = 171/235 (72.77%), Query Frame = 1

Query:   28 GRKFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF*RARYTPAHVMVGEFWGVWYADG 732
            G KFP L      + +LVLC R  CLL+L++   +  ++  TK RA    + G KWT  PEP K +KRRC+DRYCTSP  +EALLG V + GCVLDMCGG  DA+A RL  TC+V+TND+  RLSP      TNLDAS ASF  DFL A  GQ+PDW++TSPPYKGAL +VK+AL++A KGVALKLPLSFLEPCADR GWLQANPPA+C+   RARY PAHV VGEFWGVWY  G
Sbjct:    2 GDKFPGLKCGDPSIDKLVLCKRAGCLLELFVLNQQRDSRAPTKRRA----KRGPKWTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPA-----TNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPG 227

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BLAST of Ec-00_002200.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 4.850e-83
Identity = 133/247 (53.85%), Postives = 167/247 (67.61%), Query Frame = 1

Query:   34 KFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGL-PPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF*RARYTPAHVMVGEFWGVWYADGGSARTCD-TRMVF 768
            KFP +   G G+  LV C R +C+L+   K + +    R + + ++     A WT  PEP  H+KRR LDRYCTS  AVEALL AV + G VLDMCGGP DA+A +L  TC+VVTND+S+RLS      PDT+LDAS ++FA +FL     Q+P+ V+ SPPYKGA+++VK+AL +A  GVALK  LSFLEPC DR  WL+ANPP VCVF  RA YTP HVM+GEFWGVWY  GG       T++VF
Sbjct:   48 KFPGVMPLGVGIDSLVRCKRAECVLKQNDKHMSDFCHDRARKKQKRNRSEAATWTSAPEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHVMMGEFWGVWYCTGGDRTAVGGTKLVF 294

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BLAST of Ec-00_002200.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 2.000e-82
Identity = 122/201 (60.70%), Postives = 148/201 (73.63%), Query Frame = 1

Query:  178 RHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF*RARYTPAH-VMVGEFWGVWYADGGSARTCDTRMVFCPE 777
            RH       PEP+ H++RR LDRYCTSPEA++A LGAV++ GCVLDMCGGP DA+ATRL +TC+++TND+S+     G P DTNLDASL SF  DFL A  G+RP+WV TSPPY  AL +VK+A+SLA KGV  K+ + FLEPCAD GGWLQ NPP++CVF  RA+YT A+     EFWGVWY    S R   TR+VFCPE
Sbjct:    7 RHAKGQRTAPEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSS-----GRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQEMSCRN-RTRLVFCPE 201

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BLAST of Ec-00_002200.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.450e-63
Identity = 107/189 (56.61%), Postives = 132/189 (69.84%), Query Frame = 1

Query:   34 KFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQ----LREKNKPRTKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLP 588
            +FP+L+  G G   L LC R  CLLQLY K      +E++K R   +A Q  RH      +PEP+ H+KRR LDRYCTSPEAVEALLGAV + GC+LD+CGGP DA+ATRLG TC+V+TND+S+     G P DTNLDASL SF  DF  A  G+RPDWV+TSP YK AL +VK+A+SLA +GV +  P
Sbjct:   21 QFPALDEGGLGASTLTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWTVPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSS-----GRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204

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BLAST of Ec-00_002200.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 5.240e-63
Identity = 97/155 (62.58%), Postives = 117/155 (75.48%), Query Frame = 1

Query:  316 MCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF*RARYTPAH-VMVGEFWGVWYADGGSARTCDTRMVFCPE 777
            MCGGP DA+ATRL +TC+++TND+S+     G P DTNL+ASL  F  DFL A  G+RP+WV+TSPPY  AL +VK+A+SLA KGVA K+P+ FLEPCADRGGWLQ NPP+VCVF  RA+YT A+    GEFWGVWY    S R   TR+VFCPE
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSS-----GRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRN-RTRLVFCPE 149

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BLAST of Ec-00_002200.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.550e-57
Identity = 88/155 (56.77%), Postives = 109/155 (70.32%), Query Frame = 1

Query:  316 MCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF*RARYTPAH-VMVGEFWGVWYADGGSARTCDTRMVFCPE 777
            MCGGP DA+A   G TC+V+TND+S+RLSP                      A PG++PDWV+TSPPYKGA+ +VK+ L++AAKGVAL+LPLSF +PCADRG WL  NPP +C F  RA+YT AH V VGEFWGVWY DGG  ++  +R+VFCPE
Sbjct:    1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSP----------------------AHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWYTDGGCGKSGGSRLVFCPE 133

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BLAST of Ec-00_002200.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 2.080e-53
Identity = 81/122 (66.39%), Postives = 96/122 (78.69%), Query Frame = 1

Query:  412 LPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF*RARYTPAHVMVGEFWGVWYADGGSARTCD-TRMVFCP 774
            L PDTNLDAS  S+A D+L A  GQ+PDWV+ SPPYKGAL +VK+AL++A +GVALKLPLSFLEPCADR GWLQ NPP++C+   RARY PAHV VGEFWGVWY  GG +   D T++ F P
Sbjct:   10 LSPDTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVRVGEFWGVWYPPGGGSSIGDSTKLSFLP 131

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BLAST of Ec-00_002200.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 7.660e-53
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 1

Query:  412 LPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF*RARYTPAHVMVGEFWGVWYADGGSARTCD-TRMVFCP 774
            L PDTNLDAS ASF  DFL A   Q+PDWV+T PPY GAL +VK+AL +A KGVALKLPLSFLEPCADR GWLQANPPA+C+   RARY PAHV VGEFWGVWY  G    + D T+++F P
Sbjct:   51 LSPDTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGSGYSSSDSTKLLFVP 172

The following BLAST results are available for this feature:

BLAST of Ec-00_002200.1 vs. uniprot

BLAST of Ec-00_002200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FJU4_ECTSI	1.190e-160	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JUK3_9PHAE	3.140e-100	60.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K049_9PHAE	9.850e-99	61.70	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHQ4_9PHAE	4.850e-83	53.85	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
D7G0Y0_ECTSI	2.000e-82	60.70	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KD58_9PHAE	1.450e-63	56.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LSI1_ECTSI	5.240e-63	62.58	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K929_9PHAE	3.550e-57	56.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAM1_9PHAE	2.080e-53	66.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JSV3_9PHAE	7.660e-53	68.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:2514612..2516236 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	801
Hectar predicted targeting category	other localisation
Gene id	Ec-00_002200.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_002200	Ec-00_002200	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 2514612..2516236 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002200.1.1	Ec-00_002200.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2514612..2515006 +
Ec-00_002200.1.2	Ec-00_002200.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2515831..2516236 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002200.1	CDS:Ec-00_002200.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 2514612..2515006 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002200	3UTR:Ec-00_002200.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 2516102..2516236 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_002200.1	Ec-00_002200.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 2514612..2516101 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:2514612..2516236+
coding sequence from alignment at chr_00:2514612..2516236+

mRNA sequence

>Ec-00_002200.1 ID=Ec-00_002200.1|Name=Ec-00_002200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=222bp
MGFYRRGRHGRKFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPR
TKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELE
GCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLAS
FAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFL
EPCADRGGWLQANPPAVCVFF*

spliced messenger RNA

>Ec-00_002200.1 ID=Ec-00_002200.1|Name=Ec-00_002200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=801bp|location=Sequence derived from alignment at chr_00:2514612..2516236+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTTTATCGAAGAGGCCGGCATGGCCGAAAATTCCCCTCCTTGAA
TGCTGAGGGCTCGGGCATGTACCGGCTTGTCCTGTGCAACCGGCCGGACT
GCCTCCTGCAGCTGTACATCAAGCAGCTACGGGAGAAGAACAAGCCGCGC
ACAAAGCTTCGAGCTCAGCAACTAGCGCGGCACGGCGCAAAGTGGACCGG
TATTCCTGAACCGAGGAAGCACATCAAACGCCGTTGTCTGGATCGCTACT
GCACTTCGCCTGAGGCTGTGGAGGCCTTGCTGGGTGCTGTTGAACTCGAG
GGGTGTGTCCTCGACATGTGTGGGGGGCCAGGCGATGCCATTGCAACTCG
TCTTGGAGCCACGTGCAAGGTCGTCACGAACGACATAAGCACTAGATTGT
CCCCTGGAGGGTTGCCCCCGGACACGAACCTGGACGCAAGCTTGGCGTCA
TTTGCTGTCGACTTTCTGTTAGCCAAGCCTGGGCAACGACCTGACTGGGT
CCTGACGAGCCCCCCGTACAAGGGCGCGCTAGAATATGTCAAGTCGGCTT
TGTCGCTGGCTGCGAAAGGCGTGGCACTGAAACTGCCACTGTCGTTCTTG
GAACCATGTGCCGACCGGGGAGGCTGGCTTCAGGCGAATCCCCCCGCTGT
GTGTGTGTTTTTTTAGGAGGGCTAGGTACACACCCGCGCACGTCATGGTT
GGCGAATTTTGGGGCGTGTGGTATGCTGATGGTGGTAGTGCGCGTACCTG
TGATACGCGAATGGTCTTCTGCCCGGAATAATAAGCGTTGGGGAACGAGT
G

protein sequence of Ec-00_002200.1

>Ec-00_002200.1 ID=Ec-00_002200.1|Name=Ec-00_002200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=222bp
MGFYRRGRHGRKFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPR
TKLRAQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELE
GCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLAS
FAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFL
EPCADRGGWLQANPPAVCVFF*

mRNA from alignment at chr_00:2514612..2516236+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_002200.1 ID=Ec-00_002200.1|Name=Ec-00_002200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1625bp|location=Sequence derived from alignment at chr_00:2514612..2516236+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCTTTTATCGAAGAGGCCGGCATGGCCGAAAATTCCCCTCCTTGAA
TGCTGAGGGCTCGGGCATGTACCGGCTTGTCCTGTGCAACCGGCCGGACT
GCCTCCTGCAGCTGTACATCAAGCAGCTACGGGAGAAGAACAAGCCGCGC
ACAAAGCTTCGAGCTCAGCAACTAGCGCGGCACGGCGCAAAGTGGACCGG
TATTCCTGAACCGAGGAAGCACATCAAACGCCGTTGTCTGGATCGCTACT
GCACTTCGCCTGAGGCTGTGGAGGCCTTGCTGGGTGCTGTTGAACTCGAG
GGGTGTGTCCTCGACATGTGTGGGGGGCCAGGCGATGCCATTGCAACTCG
TCTTGGAGCCACGTGCAAGGTCGTCACGAACGACATAAGCACTAGGTGAG
TGCTGCTGCGTGTTGCTTCTCTTGGTTGGCGGCAAGGTAATCTAACGGGA
CGTCGCCCCGCCTGTCAGTCAGCGCTGGATACTCTAGCGGAACGTGCCTT
TGAAATTGCGGGCATGACATGATAAGTGCATGTTCGGAGCTTATTGTTTC
CTACAACCGATCGCTTCCACTATTCTTGTTCTCGTGGTCCATCGCAACGA
CCAGTCGCGCGTGCCTTCGACATTTTTTGTTGAAAGCAAGCTAGTCCCAA
GCTGTTCTTTATTGTTGCATGATATCACTGGTATATCGCTTTGCGTTTCA
AGGCGTGTTCCGACCGCGATCAACAGTAGCGTCACAGCATCCCGAGCTCC
GTGTCTTTTTGGTATTTGCAGGATTGGGGATACGAAACTGTTAAGTTTTT
TTCTTTTGTGTTGTTGTCAATTACAGCCAAAAGGGTACCTCCTTGCATTT
CTTTGCCTTGTTTGGTGTTGAAAGTTCTGCTAGGTTGAACATAGAGCTGG
TCGAGTGCAAGCGAACTACTTTTTTCATGAAGTATCTGCTCGTATAATCA
GTGGCACAGGCGTGGTGTGGTTCAAAGTAAACGCAATGATGACGTTCAGG
GATTTTTAGCGTCTCGAAGTGATCGACACATACGACACGTACATTGTAGT
CACCATAATCAGGTGGTACGTTTGTGGGCGAGAGGAAGGTCCCTTGCGAC
TTTTTCCTGGATCTCCCACCTTTAAATCTTTCCGAGATAGCCACGTACCC
TCATGACAATTTTTTTGGGACTTCCCTCTCACCCGAACTATCCGTTTGTC
ATATTGTTTTTCACACCAGATTGTCCCCTGGAGGGTTGCCCCCGGACACG
AACCTGGACGCAAGCTTGGCGTCATTTGCTGTCGACTTTCTGTTAGCCAA
GCCTGGGCAACGACCTGACTGGGTCCTGACGAGCCCCCCGTACAAGGGCG
CGCTAGAATATGTCAAGTCGGCTTTGTCGCTGGCTGCGAAAGGCGTGGCA
CTGAAACTGCCACTGTCGTTCTTGGAACCATGTGCCGACCGGGGAGGCTG
GCTTCAGGCGAATCCCCCCGCTGTGTGTGTGTTTTTTTAGGAGGGCTAGG
TACACACCCGCGCACGTCATGGTTGGCGAATTTTGGGGCGTGTGGTATGC
TGATGGTGGTAGTGCGCGTACCTGTGATACGCGAATGGTCTTCTGCCCGG
AATAATAAGCGTTGGGGAACGAGTG

Coding sequence (CDS) from alignment at chr_00:2514612..2516236+

>Ec-00_002200.1 ID=Ec-00_002200.1|Name=Ec-00_002200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=666bp|location=Sequence derived from alignment at chr_00:2514612..2516236+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCTTTTATCGAAGAGGCCGGCATGGCCGAAAATTCCCCTCCTTGAA
TGCTGAGGGCTCGGGCATGTACCGGCTTGTCCTGTGCAACCGGCCGGACT
GCCTCCTGCAGCTGTACATCAAGCAGCTACGGGAGAAGAACAAGCCGCGC
ACAAAGCTTCGAGCTCAGCAACTAGCGCGGCACGGCGCAAAGTGGACCGG
TATTCCTGAACCGAGGAAGCACATCAAACGCCGTTGTCTGGATCGCTACT
GCACTTCGCCTGAGGCTGTGGAGGCCTTGCTGGGTGCTGTTGAACTCGAG
GGGTGTGTCCTCGACATGTGTGGGGGGCCAGGCGATGCCATTGCAACTCG
TCTTGGAGCCACGTGCAAGGTCGTCACGAACGACATAAGCACTAGATTGT
CCCCTGGAGGGTTGCCCCCGGACACGAACCTGGACGCAAGCTTGGCGTCA
TTTGCTGTCGACTTTCTGTTAGCCAAGCCTGGGCAACGACCTGACTGGGT
CCTGACGAGCCCCCCGTACAAGGGCGCGCTAGAATATGTCAAGTCGGCTT
TGTCGCTGGCTGCGAAAGGCGTGGCACTGAAACTGCCACTGTCGTTCTTG
GAACCATGTGCCGACCGGGGAGGCTGGCTTCAGGCGAATCCCCCCGCTGT
GTGTGTGTTTTTTTAG

Synonyms

The feature 'Ec-00_002200.1' has the following synonyms


Synonym
Esi1376_0001
Esi_1376_0001