Ec-00_002170.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002170.1
Unique NameEc-00_002170.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length72
Homology
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BLAST of Ec-00_002170.1 vs. uniprot
Match: D7FJU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU2_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 3.050e-38
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII
Sbjct:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 62
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BLAST of Ec-00_002170.1 vs. uniprot
Match: A0A6H5JHG7_9PHAE (ANAPC8 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHG7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 7.590e-32
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            + +FDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII
Sbjct:  373 LRNFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 434
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BLAST of Ec-00_002170.1 vs. uniprot
Match: A0A7S2KCK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCK8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.430e-18
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            M DFDQ  + F +LRRRDP R+E +D+FSNILYVKECKAELS LAHT  ++   +PET CI+
Sbjct:  181 MRDFDQAQEQFVDLRRRDPFRLEHMDIFSNILYVKECKAELSHLAHTVVRTDKFKPETCCIV 242
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BLAST of Ec-00_002170.1 vs. uniprot
Match: A0A7S3ZFV4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZFV4_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 4.340e-16
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            M DFD+    F++L  RDP R+  +DV+SNIL+VKECKAELSFLAHT  K+   RPET CII
Sbjct:   28 MRDFDEAQQLFQDLHVRDPWRLSSMDVYSNILFVKECKAELSFLAHTAIKTDKYRPETCCII 89
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BLAST of Ec-00_002170.1 vs. uniprot
Match: A0A7S3LQH4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LQH4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.250e-15
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            M +FD+  D F+ L  RDP R++ +D +SNILYVKECKAELS+LAHT  +S   +PET CI+
Sbjct:   89 MRNFDEAQDLFEALTARDPHRLQNMDTYSNILYVKECKAELSYLAHTAVRSNKYKPETCCIV 150
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BLAST of Ec-00_002170.1 vs. uniprot
Match: A0A7S1BKQ2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKQ2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.840e-14
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            M +FDQ  + F  LR+RDP R+E +D+FSNILYVK+CKAELS LAH   ++   RPE+ CII
Sbjct:  315 MRNFDQAQEHFITLRQRDPHRLEQMDIFSNILYVKDCKAELSHLAHQAIQNDKYRPESCCII 376
[Close]
BLAST of Ec-00_002170.1 vs. uniprot
Match: A0A7S1BKD8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKD8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.870e-14
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            M +FDQ  + F  LR+RDP R+E +D+FSNILYVK+CKAELS LAH   ++   RPE+ CII
Sbjct:  525 MRNFDQAQEHFITLRQRDPHRLEQMDIFSNILYVKDCKAELSHLAHQAIQNDKYRPESCCII 586
[Close]
BLAST of Ec-00_002170.1 vs. uniprot
Match: A0A8J2SGM3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGM3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.250e-14
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    7 DFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            DFDQ  D F+ LR RDP R++ LDV+SN+LYV+E +AELS LAH   +    RPET C++
Sbjct:  329 DFDQARDCFEALRERDPFRLDDLDVYSNVLYVQEARAELSRLAHAATRCEKYRPETCCVV 388
[Close]
BLAST of Ec-00_002170.1 vs. uniprot
Match: A0A2R6WGZ0_MARPO (ANAPC8 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WGZ0_MARPO)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-13
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            + +FD+    F+EL R DP R+EGLD +SNILYVKEC A LSFLAH    +   RPET CII
Sbjct:  269 LREFDEAESLFEELLRTDPFRIEGLDTYSNILYVKECFAALSFLAHKAVLTDKYRPETCCII 330
[Close]
BLAST of Ec-00_002170.1 vs. uniprot
Match: A0A2R5GF37_9STRA (Cell division cycle protein 23-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GF37_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.520e-13
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNKSAPLRPETNCII 186
            + +FD+  + F+ L  RDP R++ +D +SNILYVKECKAELS+LAH   +S   RPET CI+
Sbjct:  294 LRNFDEAQEHFELLIARDPHRLQNMDTYSNILYVKECKAELSYLAHMAVRSNKYRPETCCIV 355
The following BLAST results are available for this feature:
BLAST of Ec-00_002170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJU2_ECTSI3.050e-38100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHG7_9PHAE7.590e-3295.16ANAPC8 domain-containing protein n=3 Tax=Ectocarpu... [more]
A0A7S2KCK8_9STRA1.430e-1862.90Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3ZFV4_9EUKA4.340e-1661.29Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S3LQH4_9STRA6.250e-1556.45Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1BKQ2_9STRA2.840e-1458.06Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BKD8_9STRA2.870e-1458.06Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A8J2SGM3_9STRA7.250e-1455.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2R6WGZ0_MARPO1.840e-1358.06ANAPC8 domain-containing protein n=2 Tax=Marchanti... [more]
A0A2R5GF37_9STRA2.520e-1353.23Cell division cycle protein 23-like n=1 Tax=Hondae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2486488..2487860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D7FJU2
Preferred nameAPC8
Length216
KEGG koko:K03355
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
Gene idEc-00_002170.1
GOsGO:0008150,GO:0031347,GO:0048583,GO:0050789,GO:0065007,GO:0080134
EggNOG free text desc.regulation of mitotic metaphase/anaphase transition
EggNOG OGsCOG0013@1,KOG1155@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002170Ec-00_002170Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2486488..2487860 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002170.1.1Ec-00_002170.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2486488..2486582 +
Ec-00_002170.1.2Ec-00_002170.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2487008..2487099 +
Ec-00_002170.1.3Ec-00_002170.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2487832..2487860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002170.1CDS:Ec-00_002170.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2486488..2486582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002170.1Ec-00_002170.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2486488..2487860 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002170.1 ID=Ec-00_002170.1|Name=Ec-00_002170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=72bp
MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNK
SAPLRPETNCIIVSRGNTRRR*
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spliced messenger RNA

>Ec-00_002170.1 ID=Ec-00_002170.1|Name=Ec-00_002170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=216bp|location=Sequence derived from alignment at chr_00:2486488..2487860+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGATTTCGACCAGGGCCACGATGACTTCAAGGAGCTTCGAAGGCG
GGATCCCCTGCGGATGGAGGGACTCGACGTGTTTTCCAATATCCTGTACG
TGAAAGAGTGCAAGGCAGAGCTGTCCTTCCTCGCCCACACCACCAACAAA
AGCGCGCCGCTACGTCCAGAGACGAACTGCATCATAGTCTCAAGGGGCAA
CACGAGAAGGCGGTGA
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protein sequence of Ec-00_002170.1

>Ec-00_002170.1 ID=Ec-00_002170.1|Name=Ec-00_002170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=72bp
MPDFDQGHDDFKELRRRDPLRMEGLDVFSNILYVKECKAELSFLAHTTNK
SAPLRPETNCIIVSRGNTRRR*
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mRNA from alignment at chr_00:2486488..2487860+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002170.1 ID=Ec-00_002170.1|Name=Ec-00_002170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1373bp|location=Sequence derived from alignment at chr_00:2486488..2487860+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCAGATTTCGACCAGGGCCACGATGACTTCAAGGAGCTTCGAAGGCG
GGATCCCCTGCGGATGGAGGGACTCGACGTGTTTTCCAATATCCTGTGAG
TGTTGCTCGCCAGCAACGGGTCCAACGGTCCTATGATCTCTGACAAGCCT
CGACCATTGAATTGAGGGTCCCGACGACCCGTTTCCACCCCTTTTTGTTC
TCGCATGCATGTTTTGCAATCGTCACCCCTAGGCTTGGCTCTCTCGGTTG
TTTTCGTAAGTATATTCGCGGGCGGCGGCTTGGTGGCACGATATTGCGCC
AGATACCCACCCCTGCACTTGTAGCCCGTCTGGGGCGTGTTGGAGCAGTT
TCTCTTACATGTACAGGGTTCTCATCTTCTTTCGTTCGCTGACTGCTGCT
GTTTTTTTATGTTGGCTTCCCGTCATGCTTCGTTGGGTCCATGTATTTCG
ATTGGCGCTGATTGTGTGCAGTCTTGCTTTTGTTCTGAACACTCGTGTGT
GCCTGGTTTGACCACTCCAGGTACGTGAAAGAGTGCAAGGCAGAGCTGTC
CTTCCTCGCCCACACCACCAACAAAAGCGCGCCGCTACGTCCAGAGACGA
ACTGCATCATAGGTGAGCCTAAGCAACGTGTTGTGACTGCGGTTGCCTAA
GCAACGTGTTGTGACTGCGGTTGCCTAAGCAACGTGTTGTGACTTGCGGT
TGCCAATGACGCAATGATGGCTTGGCGTCGTTGCGTAGACGAAAAAGCGG
GGGAACAAGTTGAAACTCTCACGGGTTTTCCTGCCCTCCTCCAAGGTGTC
AACCTCGTCCTTGATGGGTGTGTTGCGCTACGCGACTCTCAAGGCTGAAG
CCCTCTAACCACGCCAGTTCCTAACAACGATGCTGGCCTTTTTTGCCGGG
GACAATGCGAGGTCGTTTCCCCCAACGCACCTACTGTACTCACAAGAAAA
CACGCTCTGGTTGCAACATTTTTGGCTTGTAAAAAAACTGGACCGCGTGA
TTTGCTTGGTCTGTGTGGTTTCTTTCGTCGCCCGTACGCGTTGGGTTCAT
TTTATTATATGAATTGCCACCAGGTGTGGTGTTGTATTGTGTGTGCGGCG
GGAGGGCTGCCTTGTGTGGGTGTGTTATCTTGTGCGGTGTGCGGTACTTG
TTGCACAAGTCGTGTGGGTACGAACCAGGAAGTGCTACGTATATATGCCT
CTGCCGGCGTGGCACGAACAGGCGGCCAATGACCCTTTCCTCCCCCAAGA
CTTTTAGGAGTGATCTCGACGCTCGCACATGAAATCTACACGATGTTACT
CTGTGTCTCTGTTCGTTTGCCGGAAACCAAGGGAACTACTACAGTCTCAA
GGGGCAACACGAGAAGGCGGTGA
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Coding sequence (CDS) from alignment at chr_00:2486488..2487860+

>Ec-00_002170.1 ID=Ec-00_002170.1|Name=Ec-00_002170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=216bp|location=Sequence derived from alignment at chr_00:2486488..2487860+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCAGATTTCGACCAGGGCCACGATGACTTCAAGGAGCTTCGAAGGCG
GGATCCCCTGCGGATGGAGGGACTCGACGTGTTTTCCAATATCCTGTACG
TGAAAGAGTGCAAGGCAGAGCTGTCCTTCCTCGCCCACACCACCAACAAA
AGCGCGCCGCTACGTCCAGAGACGAACTGCATCATAGTCTCAAGGGGCAA
CACGAGAAGGCGGTGA
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Synonyms
The feature 'Ec-00_002170.1' has the following synonyms
Synonym
Esi1360_0002
Esi_1360_0002