Ec-00_002140.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002140.1
Unique NameEc-00_002140.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length334
Homology
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BLAST of Ec-00_002140.1 vs. uniprot
Match: D7FJC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC3_ECTSI)

HSP 1 Score: 569 bits (1466), Expect = 2.100e-203
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 1 
Query:    1 MSPSISCVPPSAMAQEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRQDGGEEKDGREEAALREIKRRLDXXXXXXXXXXXXXXXXXXXXXXXGGAGSGVVAMNGATTAAGLASDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQSAWEPWMSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNNACGAGLDSAVTAAFLEDEEDYGGEVVGDGAIGLANGEARRFGDLDGAGXXXXXXXXXXXXXXXXEDLWEELGRDRGRRRRDDVNRGDGYRWPHP 999
            MSPSISCVPPSAMAQEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRQDGGEEKDGREEAALREIKRRLDXXXXXXXXXXXXXXXXXXXXXXXGGAGSGVVAMNGATTAAGLASDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQSAWEPWMSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNNACGAGLDSAVTAAFLEDEEDYGGEVVGDGAIGLANGEARRFGDLDGAGXXXXXXXXXXXXXXXXEDLWEELGRDRGRRRRDDVNRGDGYRWPHP
Sbjct:    1 MSPSISCVPPSAMAQEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRQDGGEEKDGREEAALREIKRRLDXXXXXXXXXXXXXXXXXXXXXXXGGAGSGVVAMNGATTAAGLASDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQSAWEPWMSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNNACGAGLDSAVTAAFLEDEEDYGGEVVGDGAIGLANGEARRFGDLDGAGXXXXXXXXXXXXXXXXEDLWEELGRDRGRRRRDDVNRGDGYRWPHP 333
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BLAST of Ec-00_002140.1 vs. uniprot
Match: A0A6H5JHP7_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP7_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 1.320e-73
Identity = 143/158 (90.51%), Postives = 145/158 (91.77%), Query Frame = 1 
Query:  451 MNGATTAAGLASDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQSAWEPWMSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNNACGAGLDSAVTAAFLEDEEDYGGEVVGDGAIGLANGEARRFGDLDGAGXXXXXXXXXXXXXXXXEDLWE 924
            MNGA  AAGLASDHLRSGSST AVVDGNLPARSPVRSGACSPAAATQ AWEPW+SEWDDPEDCHRRERSRSGSFFRPDLESIHEGARN+A GAGLDSAV AAFLEDE DYG EV GDGAIGLANGEAR FGDLDG GXXXXXXXXXXXXXX  EDLWE
Sbjct:    1 MNGAAAAAGLASDHLRSGSSTAAVVDGNLPARSPVRSGACSPAAATQLAWEPWVSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNSAFGAGLDSAVAAAFLEDEGDYGCEVEGDGAIGLANGEARSFGDLDGDGXXXXXXXXXXXXXX--EDLWE 156
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BLAST of Ec-00_002140.1 vs. uniprot
Match: A0A6H5JK06_9PHAE (R3H domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK06_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 2.930e-51
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:   43 QEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRQDGGEEKDGREEAALREIKRRLD 354
            +EAVHALG KQSAL KVLI+AGVREPHD+AGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADT  SRQDGGEE+DGREEAAL EIK RLD
Sbjct:  435 EEAVHALGEKQSALEKVLINAGVREPHDMAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTLPSRQDGGEEEDGREEAALLEIKHRLD 538
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BLAST of Ec-00_002140.1 vs. uniprot
Match: D7FS53_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS53_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 3.340e-12
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:   43 QEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMK 153
            +EAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMK
Sbjct:  169 EEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMK 205
The following BLAST results are available for this feature:
BLAST of Ec-00_002140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJC3_ECTSI2.100e-203100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHP7_9PHAE1.320e-7390.51HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JK06_9PHAE2.930e-5190.38R3H domain-containing protein (Fragment) n=1 Tax=E... [more]
D7FS53_ECTSI3.340e-1297.303'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2427167..2429095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue5.3e-11
Seed eggNOG ortholog2880.D7FS53
Length1002
KEGG koko:K12591
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Gene idEc-00_002140.1
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002140Ec-00_002140Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2427167..2429095 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002140.1.1Ec-00_002140.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2427167..2427319 +
Ec-00_002140.1.2Ec-00_002140.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2427853..2428624 +
Ec-00_002140.1.3Ec-00_002140.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2429019..2429095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002140.1CDS:Ec-00_002140.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2427167..2427319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002140.1Ec-00_002140.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2427167..2429095 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002140.1 ID=Ec-00_002140.1|Name=Ec-00_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=334bp
MSPSISCVPPSAMAQEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDM
KSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRQDGGE
EKDGREEAALREIKRRLDEDQRREEAPRQMQLPPQSPPPSKGGAGSGVVA
MNGATTAAGLASDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQSAW
EPWMSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNNACGAGLDSAVT
AAFLEDEEDYGGEVVGDGAIGLANGEARRFGDLDGAGGGGGGGVAASEED
DEDEDLWEELGRDRGRRRRDDVNRGDGYRWPHP*
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spliced messenger RNA

>Ec-00_002140.1 ID=Ec-00_002140.1|Name=Ec-00_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1002bp|location=Sequence derived from alignment at chr_00:2427167..2429095+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCCTCCATTTCATGCGTGCCGCCGTCCGCCATGGCGCAGGAAGC
AGTGCACGCTCTCGGAGGAAAGCAATCCGCTCTAGGGAAAGTGTTGATCG
ATGCGGGCGTGAGGGAGCCTCACGACATCGCCGGGATGAAGCAGGACATG
AAGTCCTGCGACTGGCGCGAACGCCCCCTGTCGGAGGAGAAGCTGGTGTA
CGCGAGGTGCGACTCCCACTACCTCATCCCGCTCTGGCGACTCCTGCGGG
CGCGGCTGCTGGCGGCGGACACTTTCTCGAGCCGCCAAGACGGCGGAGAG
GAGAAGGACGGCAGGGAGGAGGCCGCGCTGCGGGAGATCAAGCGCCGTTT
GGACGAGGATCAACGCCGGGAAGAGGCCCCCCGCCAGATGCAACTTCCTC
CACAGTCACCCCCCCCCTCCAAGGGGGGTGCTGGTTCGGGAGTCGTCGCG
ATGAATGGCGCCACCACCGCCGCTGGGCTCGCCAGTGATCACTTACGGTC
CGGATCTTCAACAACAGCAGTTGTTGACGGGAATTTGCCCGCAAGGTCGC
CGGTGAGGTCGGGCGCCTGCTCCCCCGCCGCCGCCACCCAGTCGGCGTGG
GAGCCGTGGATGTCGGAGTGGGACGACCCTGAGGATTGCCACAGGCGCGA
ACGCAGCCGCAGCGGCTCCTTCTTTCGGCCCGACCTGGAGAGCATCCACG
AGGGCGCCCGGAACAACGCGTGCGGCGCCGGCTTAGACTCCGCCGTCACG
GCGGCATTCCTCGAAGATGAAGAAGATTACGGCGGCGAGGTCGTAGGGGA
TGGAGCAATTGGATTGGCCAACGGCGAGGCGCGCCGTTTCGGGGATCTCG
ACGGGGCTGGGGGTGGGGGGGGGGGGGGCGTTGCGGCCAGCGAGGAGGAT
GACGAGGATGAGGATCTTTGGGAAGAGTTGGGGCGTGACCGAGGGCGTCG
AAGACGCGACGACGTTAACCGCGGCGACGGCTACCGGTGGCCACACCCCT
AA
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protein sequence of Ec-00_002140.1

>Ec-00_002140.1 ID=Ec-00_002140.1|Name=Ec-00_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=334bp
MSPSISCVPPSAMAQEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDM
KSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRQDGGE
EKDGREEAALREIKRRLDEDQRREEAPRQMQLPPQSPPPSKGGAGSGVVA
MNGATTAAGLASDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQSAW
EPWMSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNNACGAGLDSAVT
AAFLEDEEDYGGEVVGDGAIGLANGEARRFGDLDGAGGGGGGGVAASEED
DEDEDLWEELGRDRGRRRRDDVNRGDGYRWPHP*
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mRNA from alignment at chr_00:2427167..2429095+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002140.1 ID=Ec-00_002140.1|Name=Ec-00_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1929bp|location=Sequence derived from alignment at chr_00:2427167..2429095+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTCCCTCCATTTCATGCGTGCCGCCGTCCGCCATGGCGCAGGAAGC
AGTGCACGCTCTCGGAGGAAAGCAATCCGCTCTAGGGAAAGTGTTGATCG
ATGCGGGCGTGAGGGAGCCTCACGACATCGCCGGGATGAAGCAGGACATG
AAGGTGAAAGGGGAGCATGGGCGTGTTTTTTCCAGTTAGGGGCAGGGTTT
GGGGTTGCGATTGGCGTCGATGTCCAGTTTCTTGATCTCTTCTTTGGGTG
TCGTGTGCGTGTGTGGTGTGTTGAGTAGCCGATCCAATGACACGATCAGA
GGAAGCGTCGGTACTTTGTATCCCATGGTCACACGGAAACGACAAAGGTA
CAGCAGTATTGTGGAGAATGTTCTTGCAGAGGAACACTGGCCGACTTCTT
GTCTGTGACGGCGGAACCAAGTTTAGGGTGATGAGCTCCCCCAGTTTTGG
CCGTGGCCGTGTGTAGAGCTTCCAAGCCCCCCGAAGCCGATGCTGTTGCA
GAATGTTGGAAAACGTGAACGCACCTTCATTAGCATGCCAGCACGTCAGG
ATGCGGCGCAGGCATGTAACGGCGGGGGGAGGTTTCCGAGGGCGATGGCA
CCGCTGGTTGGACCACACCATCCTTTTTTGAAAACCCTGCACCCAATTAG
TTCCCCTGCCTCCCCCACCTGGACACACCGCCGCAGTCCTGCGACTGGCG
CGAACGCCCCCTGTCGGAGGAGAAGCTGGTGTACGCGAGGTGCGACTCCC
ACTACCTCATCCCGCTCTGGCGACTCCTGCGGGCGCGGCTGCTGGCGGCG
GACACTTTCTCGAGCCGCCAAGACGGCGGAGAGGAGAAGGACGGCAGGGA
GGAGGCCGCGCTGCGGGAGATCAAGCGCCGTTTGGACGAGGATCAACGCC
GGGAAGAGGCCCCCCGCCAGATGCAACTTCCTCCACAGTCACCCCCCCCC
TCCAAGGGGGGTGCTGGTTCGGGAGTCGTCGCGATGAATGGCGCCACCAC
CGCCGCTGGGCTCGCCAGTGATCACTTACGGTCCGGATCTTCAACAACAG
CAGTTGTTGACGGGAATTTGCCCGCAAGGTCGCCGGTGAGGTCGGGCGCC
TGCTCCCCCGCCGCCGCCACCCAGTCGGCGTGGGAGCCGTGGATGTCGGA
GTGGGACGACCCTGAGGATTGCCACAGGCGCGAACGCAGCCGCAGCGGCT
CCTTCTTTCGGCCCGACCTGGAGAGCATCCACGAGGGCGCCCGGAACAAC
GCGTGCGGCGCCGGCTTAGACTCCGCCGTCACGGCGGCATTCCTCGAAGA
TGAAGAAGATTACGGCGGCGAGGTCGTAGGGGATGGAGCAATTGGATTGG
CCAACGGCGAGGCGCGCCGTTTCGGGGATCTCGACGGGGCTGGGGGTGGG
GGGGGGGGGGGCGTTGCGGCCAGCGAGGAGGATGACGAGGATGAGGATCT
TTGGGAAGGTAAGCGAGTGGGACCGTCGTAGGGGGTGCTTGCTTCGTTTG
GGGAGAGGGGCTCGTAGCTTGTATGTATAATAGGTGTTTCGTCCTGCGAT
ATGATTGGACCACGGTGGTCGAGTGAGGGCTACAGAACGCCCCACCACGT
ACATTTATTTTTTGTCTTGGGCGAACCCTGCGGCTGGTGTCCCTCTGCGG
GGAACGAACGTAACAGAAAATGTAAACCAGCAGGTTATTGTGTGGGATGG
GGTCCAAGGTCTTACCATGCTTTGACCATATTAACTCTCAAGTATCATGT
TTTTGCATGTGCGTTGTGGTGTGTTTTGTATACAAGCGAGTTCGGTTTAT
TCGCTCGAACCATTCCGACACATTTCTTTTTCCCCTTCAAGGTTGGGGTG
AGAGTTGGGGCGTGACCGAGGGCGTCGAAGACGCGACGACGTTAACCGCG
GCGACGGCTACCGGTGGCCACACCCCTAA
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Coding sequence (CDS) from alignment at chr_00:2427167..2429095+

>Ec-00_002140.1 ID=Ec-00_002140.1|Name=Ec-00_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1002bp|location=Sequence derived from alignment at chr_00:2427167..2429095+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTCCCTCCATTTCATGCGTGCCGCCGTCCGCCATGGCGCAGGAAGC
AGTGCACGCTCTCGGAGGAAAGCAATCCGCTCTAGGGAAAGTGTTGATCG
ATGCGGGCGTGAGGGAGCCTCACGACATCGCCGGGATGAAGCAGGACATG
AAGTCCTGCGACTGGCGCGAACGCCCCCTGTCGGAGGAGAAGCTGGTGTA
CGCGAGGTGCGACTCCCACTACCTCATCCCGCTCTGGCGACTCCTGCGGG
CGCGGCTGCTGGCGGCGGACACTTTCTCGAGCCGCCAAGACGGCGGAGAG
GAGAAGGACGGCAGGGAGGAGGCCGCGCTGCGGGAGATCAAGCGCCGTTT
GGACGAGGATCAACGCCGGGAAGAGGCCCCCCGCCAGATGCAACTTCCTC
CACAGTCACCCCCCCCCTCCAAGGGGGGTGCTGGTTCGGGAGTCGTCGCG
ATGAATGGCGCCACCACCGCCGCTGGGCTCGCCAGTGATCACTTACGGTC
CGGATCTTCAACAACAGCAGTTGTTGACGGGAATTTGCCCGCAAGGTCGC
CGGTGAGGTCGGGCGCCTGCTCCCCCGCCGCCGCCACCCAGTCGGCGTGG
GAGCCGTGGATGTCGGAGTGGGACGACCCTGAGGATTGCCACAGGCGCGA
ACGCAGCCGCAGCGGCTCCTTCTTTCGGCCCGACCTGGAGAGCATCCACG
AGGGCGCCCGGAACAACGCGTGCGGCGCCGGCTTAGACTCCGCCGTCACG
GCGGCATTCCTCGAAGATGAAGAAGATTACGGCGGCGAGGTCGTAGGGGA
TGGAGCAATTGGATTGGCCAACGGCGAGGCGCGCCGTTTCGGGGATCTCG
ACGGGGCTGGGGGTGGGGGGGGGGGGGGCGTTGCGGCCAGCGAGGAGGAT
GACGAGGATGAGGATCTTTGGGAAGAGTTGGGGCGTGACCGAGGGCGTCG
AAGACGCGACGACGTTAACCGCGGCGACGGCTACCGGTGGCCACACCCCT
AA
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Synonyms
The feature 'Ec-00_002140.1' has the following synonyms
Synonym
Esi1318_0001
Esi_1318_0001