Ec-00_002130.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_002130.1 vs. uniprot
Match: D7FJC2_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC2_ECTSI) HSP 1 Score: 486 bits (1251), Expect = 1.210e-173 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1 Query: 1 MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYLEVWLQAVAAAAAPGSASLAAIEGCGGPASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQARPRQSAPTMLNEGRY 729 MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYLEVWLQAVAAAAAPGSASLAAIEGCGGPASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQARPRQSAPTMLNEGRY Sbjct: 1 MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYLEVWLQAVAAAAAPGSASLAAIEGCGGPASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQARPRQSAPTMLNEGRY 243
BLAST of Ec-00_002130.1 vs. uniprot
Match: D7G237_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G237_ECTSI) HSP 1 Score: 456 bits (1174), Expect = 5.770e-153 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1 Query: 1 MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYLEVWLQAVAAAAAPGSASLAAIEGCGGPASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQA 684 MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYLEVWLQAVAAAAAPGSASLAAIEGCGGPASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQA Sbjct: 1 MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYLEVWLQAVAAAAAPGSASLAAIEGCGGPASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQA 228
BLAST of Ec-00_002130.1 vs. uniprot
Match: D7G4G7_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G7_ECTSI) HSP 1 Score: 448 bits (1152), Expect = 6.060e-146 Identity = 225/228 (98.68%), Postives = 226/228 (99.12%), Query Frame = 1 Query: 1 MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYLEVWLQAVAAAAAPGSASLAAIEGCGGPASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQA 684 MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYL VWLQAVAAAAAPGSASLAAIEGCGGPASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVV+SLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNR YMQA Sbjct: 1 MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYLGVWLQAVAAAAAPGSASLAAIEGCGGPASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVKSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRWYMQA 228
BLAST of Ec-00_002130.1 vs. uniprot
Match: A0A0D2UNU5_CAPO3 (Telomerase reverse transcriptase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UNU5_CAPO3) HSP 1 Score: 77.8 bits (190), Expect = 1.050e-12 Identity = 53/157 (33.76%), Postives = 75/157 (47.77%), Query Frame = 1 Query: 211 RQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQ 681 R DD EY+ +L TLVAF P G +P R A + +LL+R+++ L R + A G RN + + S+ GV FPNTT+N +++ PWELLL+R+GD ++ LL +V RL N CYMQ Sbjct: 149 RADDPQEYQHLLTTTLVAFSP-------GVPISPFKRGADFSQSCTQEELLNRLLELLFREHQPS--------HVLAPGYRKMRN---------NDKVLGTVNSLYGVENYFPNTTLNYLKTLPWELLLARMGDSVVLHLLLSASVFVRLNNGCYMQ 281
BLAST of Ec-00_002130.1 vs. uniprot
Match: A0A8J9S211_9CHLO (Probable telomerase reverse transcriptase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S211_9CHLO) HSP 1 Score: 70.5 bits (171), Expect = 3.290e-10 Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 328 SLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQA-TSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQ 681 +LQ SS ++L+R + +L+R A G D RNVL LG R P + + + + G PNTT ++++ PW+LLLSRIGD LM LL ++ LPN C++Q Sbjct: 83 TLQQHSSQLEILNRAIDALVR----------------APGGD--RNVLCLGFRKKRPSSRAAPSVGLFGTEAHHPNTTTDLLKGEPWQLLLSRIGDTLMLYLLMHTSLFLPLPNGCFLQ 183
BLAST of Ec-00_002130.1 vs. uniprot
Match: A0A507F327_9FUNG (Telomerase reverse transcriptase n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507F327_9FUNG) HSP 1 Score: 60.1 bits (144), Expect = 9.870e-7 Identity = 43/154 (27.92%), Postives = 68/154 (44.16%), Query Frame = 1 Query: 220 DGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPNTTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQRLPNRCYMQ 681 D P+Y LK T+VA E+ PLP + S +++++ ++ +L+ G D NVL+ G R + + + G+ FPNT VN +++P WE+LL RIG M LL + L + CY+Q Sbjct: 39 DPPKYHHFLKTTMVARSL--------ESKEPLPPSQG-EVIFSQSEIVNSAIEKILK------------------GCDGAANVLTFGYRKLSGKGGNRVTGTHGIENFFPNTIVNYVKAPVWEMLLGRIGVRAMTDLLLNTTMFMTLQDGCYVQ 165
BLAST of Ec-00_002130.1 vs. uniprot
Match: A0A6P8PP08_GEOSA (Telomerase reverse transcriptase n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8PP08_GEOSA) HSP 1 Score: 56.2 bits (134), Expect = 1.930e-5 Identity = 45/163 (27.61%), Postives = 69/163 (42.33%), Query Frame = 1 Query: 193 PASYLSRQDDGPEYKKMLKETLVAFHPSPVQAVPGEAHAPLPRHASLQHRSSMADLLDRVVQSLLRSSTVGGQGNSVGGYYAAQGDDPRRNVLSLGCRVAGPQATSELLSVQGVACTFPN-TTVNVIRSPPWELLLSRIGDDLMFALLRQHAVLQR-LPNRCY 675 P+ L + D P Y++ L E +V S Q L + + Q SS +L+ RV+Q + +RNVL+ G + + + + + PN TT + S WE+LLSRIGDD+M LL ++ LP+ CY Sbjct: 37 PSRPLLQSSDSPAYQRFLSELVVCMPVSAKQ---------LSQPINFQQVSSQQELVARVIQKICEKG--------------------KRNVLAFGYTLQNEKNSVRVRFASNICNYSPNSTTATISTSNLWEMLLSRIGDDVMMYLLEHCSLFMLVLPSCCY 170 The following BLAST results are available for this feature:
BLAST of Ec-00_002130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_002130.1 ID=Ec-00_002130.1|Name=Ec-00_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=244bpback to top spliced messenger RNA >Ec-00_002130.1 ID=Ec-00_002130.1|Name=Ec-00_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=732bp|location=Sequence derived from alignment at chr_00:2418615..2420158+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGCCACCGGTGCAAGGCGGACGGTGCCAGTCTCCTGGAAAGGGCCAAAGback to top protein sequence of Ec-00_002130.1 >Ec-00_002130.1 ID=Ec-00_002130.1|Name=Ec-00_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=244bp MPPVQGGRCQSPGKGQSPDGRWMLKLIYPNAVNLDSYLEVWLQAVAAAAAback to top mRNA from alignment at chr_00:2418615..2420158+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_002130.1 ID=Ec-00_002130.1|Name=Ec-00_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1544bp|location=Sequence derived from alignment at chr_00:2418615..2420158+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:2418615..2420158+ >Ec-00_002130.1 ID=Ec-00_002130.1|Name=Ec-00_002130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=732bp|location=Sequence derived from alignment at chr_00:2418615..2420158+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_002130.1' has the following synonyms
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