Ec-00_002110.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002110.1
Unique NameEc-00_002110.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length132
Homology
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BLAST of Ec-00_002110.1 vs. uniprot
Match: D7FJC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC1_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 7.190e-84
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 
Query:    1 MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQVSNTLAPLGHSASSPATLALAESQQDVAGGDAATPRRGSGRIILADEISNRRGSGTKNAAVGIAE 393
            MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQVSNTLAPLGHSASSPATLALAESQQDVAGGDAATPRRGSGRIILADEISNRRGSGTKNAAVGIAE
Sbjct:    1 MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQVSNTLAPLGHSASSPATLALAESQQDVAGGDAATPRRGSGRIILADEISNRRGSGTKNAAVGIAE 131
[Close]
BLAST of Ec-00_002110.1 vs. uniprot
Match: D7G5R3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R3_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.210e-68
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQVSNTLAPLGHSASSPATLALAESQQDVAGGDAATPRRGSGRIILADEISNRRG 357
            MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQVSNTLAPLGHSASSPATLALAESQQDVAGGDAATPRRGSGRIILADEISNRRG
Sbjct:  564 MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENRVRAQRLSGEAAAFAMQVSNTLAPLGHSASSPATLALAESQQDVAGGDAATPRRGSGRIILADEISNRRG 682
The following BLAST results are available for this feature:
BLAST of Ec-00_002110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJC1_ECTSI7.190e-84100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R3_ECTSI1.210e-68100.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2406084..2408124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length396
Hectar predicted targeting categoryother localisation
Gene idEc-00_002110.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002110Ec-00_002110Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2406084..2408124 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002110.1.4Ec-00_002110.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2406084..2406120 -
Ec-00_002110.1.3Ec-00_002110.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2406405..2406565 -
Ec-00_002110.1.2Ec-00_002110.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2407149..2407310 -
Ec-00_002110.1.1Ec-00_002110.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2408089..2408124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002110.1CDS:Ec-00_002110.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2406084..2406120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002110.1Ec-00_002110.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2406084..2408124 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002110.1 ID=Ec-00_002110.1|Name=Ec-00_002110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=132bp
MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENR
VRAQRLSGEAAAFAMQVSNTLAPLGHSASSPATLALAESQQDVAGGDAAT
PRRGSGRIILADEISNRRGSGTKNAAVGIAE*
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spliced messenger RNA

>Ec-00_002110.1 ID=Ec-00_002110.1|Name=Ec-00_002110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=396bp|location=Sequence derived from alignment at chr_00:2406084..2408124- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAACCACGTTCGACGAGTGGGACACCCTCTTGTTCCCGAACCCGCC
TTCTCGGGTGGAAGGCGTCCCGAAGTTCGCCGAGACCAAGAAGAGGGAGT
CGTACTTCCAGGAGTTCTGCAGCGTGACGGAGAAGTTCGAGGAGAACCGT
GTCAGGGCACAGCGGCTTAGCGGGGAGGCGGCTGCCTTCGCCATGCAGGT
GTCCAACACGCTGGCGCCTCTTGGTCACTCCGCATCTTCGCCAGCTACCT
TGGCCCTCGCCGAGAGCCAGCAAGACGTGGCCGGCGGCGACGCTGCCACC
CCCAGGCGCGGAAGCGGCCGGATCATTCTCGCGGACGAGATCTCCAACCG
GCGGGGGAGTGGTACGAAAAACGCCGCTGTTGGAATCGCAGAGTGA
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protein sequence of Ec-00_002110.1

>Ec-00_002110.1 ID=Ec-00_002110.1|Name=Ec-00_002110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=132bp
MRTTFDEWDTLLFPNPPSRVEGVPKFAETKKRESYFQEFCSVTEKFEENR
VRAQRLSGEAAAFAMQVSNTLAPLGHSASSPATLALAESQQDVAGGDAAT
PRRGSGRIILADEISNRRGSGTKNAAVGIAE*
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mRNA from alignment at chr_00:2406084..2408124-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002110.1 ID=Ec-00_002110.1|Name=Ec-00_002110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2041bp|location=Sequence derived from alignment at chr_00:2406084..2408124- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGAACCACGTTCGACGAGTGGGACACCCTCTTGGTGAGACTAAACTC
TTTGCACGCGTGAAAGACCTCCTGACGACGACACCAACAGGAGCAGCAGC
AACTACTACTACTACTACTACTACTACTACTACCACCACTACTACGTTGT
TTTGTCTTACAATGTTCCCTCAAGCTGGAATGGTTTACGTGACATGATTC
TCCCGGTATCGTACAGAGGGGTTGGCGCTGCTCCTTCGGGCCTACACGTA
TGACGTCTACCTCTCCATAGCAAAAACGAAATCCCCGGCGGATCAAGAAC
TTAACATCGCGTGACTTCGATTCACGTGATGTGGCCTCTTTGACCACACT
CGGCGCCCACCTCTGAAGGTTTTGGCGCTAGGTAGAGATAGATCTTCCTC
TATCGCGCTGAGCGACAGCCGTAGTGCGTGCGACGTGTAGCCGTCTCTGT
TATCATGTACCTTTCGGGTGCGGACACACACAATCCTTTCCAGGCAGATA
CGCACGACGTTCTTCACGTGGGATAATATCTACCGTTCGCCGGCCTTCGG
TCATGCCGGCCTAGGCAATGAATGAATGCACTTCTCGAGTGCAGTACAAC
CGGGCAATACAATACCTTACGGGGAAAGAGGTGCCTCTTAGAGGAGATGA
AGATTTTTTTTTTAACAAGTGACGGCCATGGTGGCAAGAAAATGGTCAAC
ATGTATAGACTACATCGGTCAAGACACGAACCTCCACCCCGGACGTCGAG
CGAAATGCGAAAACGGCCGAACGCCGAGAATCTCACCGGCCCGACCCCCT
CCGGTCTCCTACAGTTCCCGAACCCGCCTTCTCGGGTGGAAGGCGTCCCG
AAGTTCGCCGAGACCAAGAAGAGGGAGTCGTACTTCCAGGAGTTCTGCAG
CGTGACGGAGAAGTTCGAGGAGAACCGTGTCAGGGCACAGCGGCTTAGCG
GGGAGGCGGCTGCCTTCGCCATGCAGGTTGGGATATGACGATGTAGGAGG
GATGCGTGAGAGCTCGAAACAGAGCGGGGGGGGGAGTACTGTTGTGTCGC
ATGCCGTGGTTGTTTGGCCATTGACTACGCGTCCTCGAGGGGACGGAGAA
TTTCGCAGTGGGTCGATCACCGATTGCCTATCGTTCCAACCTACGTTGCC
AAAGGTGCCTCAAGGGTGTTTCCCTTCGTGGGGGGGGTCACGTGGTTTGT
TACAAATCGCGATATTTCGCGACGCGGAATGGGATATGCGGATGGACATG
GGATGGAATGATTCCCCCTTTTGGCGTGATTACTTTTTGTTGCTGGGGAT
ATTTACGACTGACTGTGGGGTGAATCCTGGAACCTAAATAGCATCTTCCG
GAGATGTCGGTGGTTACCGTACGGGCGGTGGCCAATCCATTGCAGGCCCT
ACGGCAAATGTTTTTGTATCGCATCTGGCTACGTTAGGAGGTGCTGGTTT
CCATACAACACAAAATGTAGATAGCGTGTGCGATGAAAAGTTACGATTTC
TCGAAGAAGAGTCGTTATCCACCTCATGACCTCTATGCACCACATGAACC
GCGAAGCAGGTGTCCAACACGCTGGCGCCTCTTGGTCACTCCGCATCTTC
GCCAGCTACCTTGGCCCTCGCCGAGAGCCAGCAAGACGTGGCCGGCGGCG
ACGCTGCCACCCCCAGGCGCGGAAGCGGCCGGATCATTCTCGCGGACGAG
ATCTCCAACCGGCGGGGGAGGTGTGCACGCGGCCAGAGCATCAATATGTT
CACAACACCAATTTTTTTAAGATTTTGTGTGCATGTGTGGTTATATTGCG
GTGTGTTGTCGCCCACACCAACTTCTCCATGACTACACGTGACTCCATAG
TGTAACATTTCCGCTACCCGGTTATACGTAAACATCTGGACTATTATGTA
CCCCTGCCTCTAACAGCGTTCCTCTACTGTTTCATCGACCTCGCTGCCCC
CCCCCCCCCCCCCGGCTCCTGTTCACGAAACCATGCGATGTGTTTTCCTT
GCAGTGGTACGAAAAACGCCGCTGTTGGAATCGCAGAGTGA
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Coding sequence (CDS) from alignment at chr_00:2406084..2408124-

>Ec-00_002110.1 ID=Ec-00_002110.1|Name=Ec-00_002110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=396bp|location=Sequence derived from alignment at chr_00:2406084..2408124- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGAACCACGTTCGACGAGTGGGACACCCTCTTGTTCCCGAACCCGCC
TTCTCGGGTGGAAGGCGTCCCGAAGTTCGCCGAGACCAAGAAGAGGGAGT
CGTACTTCCAGGAGTTCTGCAGCGTGACGGAGAAGTTCGAGGAGAACCGT
GTCAGGGCACAGCGGCTTAGCGGGGAGGCGGCTGCCTTCGCCATGCAGGT
GTCCAACACGCTGGCGCCTCTTGGTCACTCCGCATCTTCGCCAGCTACCT
TGGCCCTCGCCGAGAGCCAGCAAGACGTGGCCGGCGGCGACGCTGCCACC
CCCAGGCGCGGAAGCGGCCGGATCATTCTCGCGGACGAGATCTCCAACCG
GCGGGGGAGTGGTACGAAAAACGCCGCTGTTGGAATCGCAGAGTGA
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Synonyms
The feature 'Ec-00_002110.1' has the following synonyms
Synonym
Esi1304_0001
Esi_1304_0001