Ec-00_001790.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_001790.2
Unique Name	Ec-00_001790.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	223

Homology

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 4.120e-95
Identity = 147/164 (89.63%), Postives = 154/164 (93.90%), Query Frame = 3

Query:  867 MTETKRLAPWDGVFKQGEDEQAKFLIFRSNMVAMFAQEGVRDVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHALEMKVGETPQEYFGRFAVLRSRLASHGVVFSDDDAN 1358
            MTE KRLAP DG+FKQGEDEQAKFLIFRSNMVAMFAQEG RDV LTEEKIPVGKEGVSMEE+ RVHSS  VEK IT+WNLLIT+VTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYH LEMKVGETPQ+YFGRFAVLRSRLA HGV+FSD+DAN
Sbjct:    1 MTEVKRLAPLDGIFKQGEDEQAKFLIFRSNMVAMFAQEGGRDVELTEEKIPVGKEGVSMEELPRVHSSDSVEKTITSWNLLITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDAN 164

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5JR49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR49_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.070e-66
Identity = 106/171 (61.99%), Postives = 140/171 (81.87%), Query Frame = 3

Query:  849 NAGTVRMTETKRLAPWDGVFKQ-GEDEQAKFLIFRSNMVAMFAQEGVRDVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHALEMKVGETPQEYFGRFAVLRSRLASHGVVFSDDDAN 1358
            ++G +RMTE++R+APWDGVFKQ G D Q K LIF+S+MVA FAQEGV +VV+++E IPVGK G +M ++R    + RV KAI AWNLLI++++YMPIL+++++DGSPSG W IFL YYEP+ARAEK+RL  +YH+  MK GE PQEYFGRF +LRSRLASHG ++ D++AN
Sbjct:  124 HSGALRMTESRRVAPWDGVFKQEGNDLQQKLLIFKSSMVARFAQEGVHEVVMSDEDIPVGKHGANMAQLRTQFDALRVAKAIAAWNLLISSISYMPILSEVVSDGSPSGRWMIFLKYYEPQARAEKKRLLKEYHSFYMKSGEIPQEYFGRFYILRSRLASHGTIYPDNEAN 294

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 4.520e-62
Identity = 100/167 (59.88%), Postives = 139/167 (83.23%), Query Frame = 3

Query:  858 TVRMTETKRLAPWDGVFKQGEDEQAKFLIFRSNMVAMFAQEGVRDVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHALEMKVGETPQEYFGRFAVLRSRLASHGVVFSDDDAN 1358
            T+RMTE++R+ PWDGVFK G+++Q K LIFRS+MVA FAQE V +VV++ + IPVG++G+SM  ++  +   +V KA+ AWNLLIT++++MPIL++I++DGSPSGGW+IFL YYEP+A+AEK+RL  +YH+  M  GE PQEYFGRF++LRSRLASHG V+ D++AN
Sbjct:  118 TLRMTESRRIEPWDGVFKSGDNKQQKLLIFRSSMVARFAQEDVHEVVMSNQDIPVGRQGISMVNLKTEYGDQKVAKAVVAWNLLITSISFMPILSEIVSDGSPSGGWRIFLKYYEPQAKAEKKRLLKEYHSFAMHAGENPQEYFGRFSILRSRLASHGTVYPDNEAN 284

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5JQW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW6_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.420e-35
Identity = 66/95 (69.47%), Postives = 82/95 (86.32%), Query Frame = 3

Query:  837 RVPINAGTVRMTETKRLAPWDGVFKQGEDEQAKFLIFRSNMVAMFAQEGVRDVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTV 1121
            RVP +A T+RMTE KRLAPWDG+++QGEDEQ +F IF SNM+AMFAQEGVR+VVL++  IPVG EG+ ME++RR+HS   VEKAITAWN+LIT+V
Sbjct:   96 RVPSSAATLRMTEVKRLAPWDGMYRQGEDEQERFSIFPSNMIAMFAQEGVREVVLSDHIIPVGLEGIDMEDLRRMHSPDSVEKAITAWNMLITSV 190

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.300e-30
Identity = 60/112 (53.57%), Postives = 90/112 (80.36%), Query Frame = 3

Query:  849 NAGTVRMTETKRLAPWDGVFKQGEDEQAKFLIFRSNMVAMFAQEGVRDVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTVTYMPILTQIIADGSPSGGWKI 1184
            ++ T RMTE +R+ PWDGVFKQG++ Q K LIFRS+M A FAQE V +VV++++ IPVG++G+SM +++  +   +V KA+ A NLLIT+++YMPIL++I++DGSPS GW++
Sbjct:  117 HSATRRMTEIRRIEPWDGVFKQGDNRQQKLLIFRSSMAARFAQEDVHEVVMSDQDIPVGRQGISMVDLKTEYGDQKVAKAVVASNLLITSISYMPILSEIVSDGSPSEGWRL 228

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5JE08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE08_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.290e-23
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 2

Query:  560 DTEQDRVSARLAEEE-ARINYLVEQRVEARLAEMSRQEAEER-RTDDVRTGREHEDRHQQHAGRPSANPTTDEIARTLADALTGRLHVSSGDMGK 838
            D  +DR   R AE++ ARIN LV +RV ARLAE++RQ+ E++ RTD VR+G +HE RHQQHAGRPSA P+TD+IARTL DALT RL ++ GDMG+
Sbjct:    5 DRNRDREGDRQAEDDDARINELVNERVAARLAEITRQQDEQQQRTDHVRSGNDHETRHQQHAGRPSAGPSTDDIARTLVDALTSRLQITPGDMGR 99

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5K5Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.230e-20
Identity = 53/173 (30.64%), Postives = 91/173 (52.60%), Query Frame = 3

Query:  840 VPINAGTVRMTETKRLAPWDGVFKQGEDEQAKFLIFRSNMVAMFAQEGVRDVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHALEMKVGETPQEYFGRFAVLRSRLASHGVVFSDDDAN 1358
            VP     +R++    +  + G F   +D Q   ++F S   ++  QE     + ++  I VGK    +  ++  H +   ++A+ AW L+I+ +    I+  I+A G P+  W  FLN+Y   A  +K  L  Q+++L+ +VGE P+ Y  R +VLR +L ++G V SD DAN
Sbjct:   87 VPTPKEAIRISAGITIPAFTGKFSPEDDVQTAVMVFTSQFRSLLEQECCLGAIESKNTIRVGKTDADISALKVEHGTVAGDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVHAETDKLELQGQWYSLKQQVGEEPRRYLTRTSVLRQKLEAYGWVQSDHDAN 259

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.350e-19
Identity = 52/155 (33.55%), Postives = 82/155 (52.90%), Query Frame = 3

Query:  894 WDGVFKQGEDEQAKFLIFRSNMVAMFAQEGVRDVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHALEMKVGETPQEYFGRFAVLRSRLASHGVVFSDDDAN 1358
            + G F   +D Q   ++F S   ++  QE     + ++  I VGK   ++  ++  H +  V++A+ AW L+I+ +    I   I+A G P+  W  FLN+Y   A  EK  L  Q ++L+ +VGE P  Y  R +VLR  L ++G V SD DAN
Sbjct:   57 FSGKFSPEDDVQTAVMVFTSQFRSLLKQERCLGAIESKNTIRVGKTDANISALKVEHGTEAVDRAVKAWQLIISNMQVPTIFPAILASGCPTESWDQFLNFYRVHAETEKLELQGQRYSLKQQVGEEPLRYLTRASVLRQNLEAYGWVQSDHDAN 211

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5LQF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQF2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.960e-18
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 2

Query:  560 DTEQDRVSARLA-EEEARINYLVEQRVEARLAEMSRQEAEER-RTDDVRTGREHEDRHQQHAGRPSANPTTDEIARTLADALTGRLHVS 820
            D  +DR S R A +++ARIN LV +RV ARLAE++RQ+ E++ RTD VR+  +HE RHQQHAGRPSA P+ D+IARTLADALT R  +S
Sbjct:    5 DRNRDRESDRQAVDDDARINELVNERVTARLAEITRQQDEQQQRTDHVRSANDHETRHQQHAGRPSAGPSADDIARTLADALTSRHQIS 93

[Close]

BLAST of Ec-00_001790.2 vs. uniprot
Match: A0A6H5LNE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.420e-18
Identity = 51/173 (29.48%), Postives = 89/173 (51.45%), Query Frame = 3

Query:  840 VPINAGTVRMTETKRLAPWDGVFKQGEDEQAKFLIFRSNMVAMFAQEGVRDVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHALEMKVGETPQEYFGRFAVLRSRLASHGVVFSDDDAN 1358
            VP    ++R++       + G F   +D Q   ++F S   ++  QE     + +++ I VG    ++  ++  H +  V++A+ AW L+I+ +    I+  I+A G P+  W  FLN+Y   A  +K  L  Q + L+ +VGE P+ Y  R +  R +L ++G V SD DAN
Sbjct:  343 VPTPKESIRISAGIAFPAFTGKFSSEDDVQTAVMVFTSQFRSLLEQERCLGAIESKKTIRVGNTDANISALKVEHGTEAVDRAVKAWQLIISKIQVPTIVPAILASGCPTESWDQFLNFYRVYAERDKLELQGQLYTLKQQVGEEPRRYLTRASAPRQKLEAYGWVQSDHDAN 515

The following BLAST results are available for this feature:

BLAST of Ec-00_001790.2 vs. uniprot

BLAST of Ec-00_001790.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24


Match Name	E-value	Identity	Description
A0A6H5KAF3_9PHAE	4.120e-95	89.63	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JR49_9PHAE	1.070e-66	61.99	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3I1_9PHAE	4.520e-62	59.88	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5JQW6_9PHAE	1.420e-35	69.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCK7_9PHAE	1.300e-30	53.57	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JE08_9PHAE	1.290e-23	62.11	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K5Z8_9PHAE	4.230e-20	30.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LC04_9PHAE	6.350e-19	33.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LQF2_9PHAE	1.960e-18	60.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LNE2_9PHAE	3.420e-18	29.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:2001261..2006514 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	1367
Hectar predicted targeting category	other localisation
Gene id	Ec-00_001790.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_001790	Ec-00_001790	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 2001261..2006514 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001790.2	Ec-00_001790.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 2005844..2006512 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001790.2.1	Ec-00_001790.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2001261..2001290 +
Ec-00_001790.2.2	Ec-00_001790.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2001726..2001794 +
Ec-00_001790.2.3	Ec-00_001790.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2001946..2002005 +
Ec-00_001790.2.4	Ec-00_001790.2.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2002342..2002453 +
Ec-00_001790.2.5	Ec-00_001790.2.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2002873..2003010 +
Ec-00_001790.2.6	Ec-00_001790.2.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2003292..2003364 +
Ec-00_001790.2.7	Ec-00_001790.2.7	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 2005630..2006514 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001790	5UTR:Ec-00_001790.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 2001261..2001290 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001790.2	CDS:Ec-00_001790.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 2005844..2006512 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001790	3UTR:Ec-00_001790.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 2006513..2006514 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:2001261..2006514+
coding sequence from alignment at chr_00:2001261..2006514+

mRNA sequence

>Ec-00_001790.2 ID=Ec-00_001790.2|Name=Ec-00_001790.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=223bp
MTSGPEESTRIATSNTRGGHRPTRRPTKSPAHSPTPSPVDFTSHQGTWVR
VPINAGTVRMTETKRLAPWDGVFKQGEDEQAKFLIFRSNMVAMFAQEGVR
DVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTVTYMPIL
TQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHALEMKVGETPQEYF
GRFAVLRSRLASHGVVFSDDDAN

spliced messenger RNA

>Ec-00_001790.2 ID=Ec-00_001790.2|Name=Ec-00_001790.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1367bp|location=Sequence derived from alignment at chr_00:2001261..2006514+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAACGGGCCGAAGCCCAAAAGCAGCAAGCAATGGAAAAGGCGGA
ACAAGGGGGAATCGAACGCGACGCACGGCTTGGATATGTGCCGGATACGT
TGTGGGAAACAATTCGCCAACGCGACGACGCAAAGGCGGCATCTTGCCCC
GCTGGCCAGATGAAGGAGGTGATGCTTCTGTCCATGGAGGAGCTCAAGCA
GGAGGGGGAGAGCGACCTGCAACATGGAAAGGCGTCATCGGCAGCGAGGG
CCAAGGCGACAGCCGCACCCGGTGCGAGAAGCAAGAGCGAGAAGGAAAAG
GAGCCCCCCGCCACAGCGTCAAAAAGCCGGTTGGAGGTTTTCGCTTCAGA
GGAGGACGAGAGCGAAGACGAGGGCGAGGATGAGGACGACCAGGGCAAGG
GAGAAAAAGGAGGAAGCCCGCGGATACCGCGCCTGCCACGTCTCCCACCG
GTAGGGGTCGAACCCGCGGCAAGTCCCCAAGCCGTATGACACGTCGTCTA
CGAGATTCGAGTCGAGCTTAGTTTGGAGTATCGCTTTGCGGCGATCAGCA
GCAGCCACCGATGAGCGACACCGAGCAAGATCGAGTGAGCGCCCGACTAG
CAGAGGAGGAAGCCCGGATCAACTACTTGGTCGAACAGAGGGTAGAAGCA
AGACTGGCCGAGATGTCGAGGCAAGAAGCAGAGGAGCGGAGGACAGATGA
CGTCCGGACCGGAAGAGAGCACGAGGATCGCCACCAGCAACACGCGGGGC
GGCCATCGGCCAACCCGACGACCGACGAAATCGCCCGCACACTCGCCGAC
GCCCTCACCGGTCGACTTCACGTCTCATCAGGGGACATGGGTAAGAGTAC
CCATTAACGCAGGGACGGTTCGAATGACTGAGACTAAGCGCCTAGCGCCT
TGGGATGGTGTTTTCAAGCAAGGGGAGGATGAGCAGGCTAAGTTTTTGAT
TTTTCGATCGAACATGGTAGCTATGTTTGCCCAGGAAGGAGTGCGTGACG
TAGTACTGACTGAAGAAAAAATTCCAGTTGGGAAAGAAGGCGTGAGCATG
GAGGAGATGCGTAGGGTGCATTCGAGTGGACGGGTAGAAAAGGCAATAAC
GGCGTGGAACCTGCTGATCACGACAGTGACATACATGCCAATCCTAACCC
AGATCATCGCCGATGGGAGTCCTAGTGGAGGTTGGAAGATATTCCTCAAT
TATTACGAGCCGCGTGCCAGGGCCGAAAAAGAAAGGCTGTCATCTCAATA
TCACGCTCTTGAGATGAAAGTAGGGGAGACCCCGCAAGAGTACTTCGGGA
GATTTGCTGTTTTGCGCAGTAGGCTCGCCTCGCACGGTGTTGTTTTCTCC
GACGATGATGCCAATGC

protein sequence of Ec-00_001790.2

>Ec-00_001790.2 ID=Ec-00_001790.2|Name=Ec-00_001790.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=223bp
MTSGPEESTRIATSNTRGGHRPTRRPTKSPAHSPTPSPVDFTSHQGTWVR
VPINAGTVRMTETKRLAPWDGVFKQGEDEQAKFLIFRSNMVAMFAQEGVR
DVVLTEEKIPVGKEGVSMEEMRRVHSSGRVEKAITAWNLLITTVTYMPIL
TQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHALEMKVGETPQEYF
GRFAVLRSRLASHGVVFSDDDAN

mRNA from alignment at chr_00:2001261..2006514+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_001790.2 ID=Ec-00_001790.2|Name=Ec-00_001790.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5254bp|location=Sequence derived from alignment at chr_00:2001261..2006514+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCAAAACGGGCCGAAGCCCAAAAGCAGGTAAGTGCTGTGACAGCGTC
TCATACGTTCTGATTTTCACCCAACGGGGTGAATTCAGCTGAGCAGAAAC
TATGAAACTACATTGTGTACACGGTTCTATCCCTTTGATGGTCTCTTGAC
ATCTTCTAACCTCGTGATCATTCCCGATGTTGCCGCCGGCTGCAAACCCC
CGTGCCCGCACCCCCACCTTCCAACCCTGCCCTGCAGCTCGAGCGCTTGG
GAATGCTCTCTGTGCACGACACCTTAATCAGGCAGGAAGAGGCGGTAAAG
AAAGTCATCAACGAGGCCACAAACAAAATAGACGTCTTACGGTGGACGGT
GAACGGTCAAGAGAATGTTTTCTCTACGTAATATTAGACCGTTCCCTGGT
CTTACACATTGTTCTGAAATACCATAGAACCGTGCCGTTTCCTGTTCACG
CAAGTCTCATGACAGCAAGCAATGGAAAAGGCGGAACAAGGGGGAATCGA
ACGCGACGCACGGCTTGGATATGTGCCGGATACGGTGCGTTTCCGGCTTT
CGACTCCTACACTTTCTTCCCCATTCGATATCATGCCGCGCTTTTTCTCG
CTTGCCGCACACTACACAAATACTGTGGTTGGCTACAAGGATATCGAAAT
TGGGCCACTGAAACGAAATCTACATGAGGGCGCAGTTGTGGGAAACAATT
CGCCAACGCGACGACGCAAAGGCGGCATCTTGCCCCGCTGGCCAGGTGAG
ATGCCGCCTTTTCCTCGTCGCGTAGCGGGGCGAGATACCGCCTTTTGCTG
CGTCGCGTTGGTGAATCTGTTGCTGCTGGGCTGAGGCCCCTTCTCATCGT
CCTTCACCGCGGCGGTGTGGTCTGGTGCTGCTGCGACGGACGGCATGTCT
GTGCGGTGGATTTTCACTCCCTACAGTAGCATGCCGTCTATCGCAGCAGC
AACAGACAACACCGCTCCGGTTATGGAAAATCAGAATGGGCCTCAAGCCC
ACCAGCAGCAAGTCCACGAGGGCTCCGGCGCGGCCGCGGCCACTAACGTT
GACTTGGACAAGGAAGGGTTCGGCCTGGCAGATGAAGGAGGTGATGCTTC
TGTCCATGGAGGAGCTCAAGCAGGAGGGGGAGAGCGACCTGCAACATGGA
AAGGCGTCATCGGCAGCGAGGGCCAAGGCGACAGCCGCACCCGGTCAGAT
CATGAATTGTTCCTCGAGGTATCGATGTCGGCACCAACCGCTGTAGGCTC
GATTTACATCTCGTCACCAGGGGGCCCTGAATACCGCTCCCTGATATTTG
GGTATCAACACTGCCCGTTCAGTGTTTTGGCGATGTAACAGGAAGGAGAG
CACCCTATGCTTATGCCGAAGCGAGTGAATCATCCAACGTGATCAAGAGC
TCTAACCGGAATCTAGAAGGCCGTTTGTATCGAGATCGACCGCCGCCAGA
GTGCCGTTGAAGTCAAACATGTAGCAAAACACGTTCTGTGGCAAGATGAG
CGGAGTGTGACCCGGGTATTTACGCAGCAATACCGTAAGTGCTCTCGCCA
CCGTCAGGCGTTCTGACCAACCCCTTTCACCACCCACCCCGCTTCCTCCT
CGATGGTGTCAGGTGCGAGAAGCAAGAGCGAGAAGGAAAAGGAGCCCCCC
GCCACAGCGTCAAAAAGCCGGTTGGAGGTTTTCGCTTCAGAGGAGGACGA
GAGCGAAGACGAGGGCGAGGATGAGGACGACCAGGGCAAGGGAGAAAAAG
GTGAGTTCACTTCACAGTACGTACTACCGCAGTTCGGTTCTCCCTCTCCT
GTGAACAGGACCATCCTCTCTACCCGTCACGCCCCCTTCGTGTCGCCGGC
GAACGTCTTACGGATTCCGCCCCGGGTTTTCTATGTAGGGTTACGGCGTT
CTCTGCAGTCAATACAGTGAAGGTGATCCAGTTGTCCGTTTTCGTTATCA
AGAAGTAAACTAAGATTCGCTCTCCTGCGTTGCTCGCGCACTCACTCTCC
TCCACCTGTCTCCCGACACGTACCGATGCAGGAGGAAGCCCGCGGATACC
GCGCCTGCCACGTCTCCCACCGGTAGGGGTCGAACCCGCGGCAAGTCCCC
AAGCGCAAGTCACGGCCGTGCCAACAATGAACACGAAGAGCGCTAGTCCG
ACAGGGCAATTGGCGGTGTTGATCATACCGGGCTGTGCACAGAATAGGGC
TCCGGTGTGCACTTAACGCAAAACTTCGTCGTGTGAACGCTTGGTACTTT
GAGGAGGGGAAGACCTATATATTTGTCCCTGTAGAAGTAGATCAGGCTAC
AAGTATGTACGAGGGTACTACTGTATCAGAAACACTCCAATTTGTAAGAG
ACCAGGAGAGTTTCACAAAGGCCTCGTCTTCCTTCCATGTAGTTGTGGGC
AGCAAAAAACAAAACACCGGGACAGATTTAACTTGGCATCCACCGATCAG
CTGTCTCGATTTACCTTGGCGCCTACTTTGTGGTGTCTTCTTTATTATGG
AGTATTTTTGTCTATTTCGCCGCTTGCTTGGGCACCGCATTCTACGAAAC
CACTTCACAGACAAACACCCAACAGCCGTGATCCTGGGAGCTGCAATTGT
TCATTGTGATCTGTTTTGTTTGTTCTTCGCTCTCTTGACTCTATCTGAGG
TCTAGGGAATGAACGCCCAAAAGCAATCATCACGAATCATCTCTTTGGCA
TGTTGAACAACCGGCATGGCAGCATATCTGCACGGTGATTTTTTTCTTTC
CCGCAGCGGTAACGACACCTCTGCCCTGGTGTCTCCTTTCCTTCATTTGC
TCAACAGAGTTGTAACATTCTGAAAGCATACGGCCCGCAGATAGACGGGT
TTCACACATGTATTGACGGGCTTCTCGCGGGTGCTTTAGCGCTAAAACTC
TGTCTCACGTCCTAAAAAATGACGCCTTTTGACATATCCTGTTCCCGTAT
GACTCTCCTTGGTCAACACCCAGCCTCCTCGTGTTTGTATTGGTCATGTG
ACGTGGAGAGCTCGTGTCAGAGATTGAGAAACCACGGGACTGGTGGGGCA
AGTGTCAATAATAATAGTCATGCTTGGTGCTGCCTGCACTACCACCAGGG
ATTTTTCTTGTCTCATTCACCGCACATGCCACCGTTCTCCCAAGCATCTA
CTGTGTTTTACACAAACGCCTCGTTTTGTTGGTCGGCCTTCGCCGTAACA
TACCTAGTACAGACCCCAAGAAACAAATGAACTATTCATACACCCCAACA
AGAATACCAACGAGGAGAATATCAAAGAATCGCTCAACACGGTGTGGCAG
GAGTCAGACCTGTAGAAAAACTTGCACCCAGCGCGCCGCATTTCTTCAGA
AATGAATGGGGACAACTCAACGATTGCCAAAGTATCTTGAGGTTCCATCG
TGAACGGTGGTAGCCCATCCGGTTGAGTCCCGATTGAGGTGTTCGTGAGT
GAATGGGTTGAAACGAACCATGTATGCGAGAGGATTGGGAACCTGGGTTC
AGCATCAAAATGATCAAATAATTCCATTATCTACTGACCTTTGAATCCAT
TCAACCCTTACAATAGGTGTTTTGAGGCGAGTACGCACTAAATAATCTTT
GATAATGCTAGAGTGGGGTTCGCTCCTTCGTCACGCAGCAATCACATCAC
TCTCATCTGTCTCGTGCTCTCTGTAGGACGAACAGCGTGCAGACGAAGCA
AGCGGGTTCGACGCCATGTTCACACCGTAGTCTAATCGATCATACCTCGA
ACGGCGACAATGCTGAAGAAACATTATTGTGGTAGGCGGTGTACAACACG
CGTTTGGAAACCTCTCGGGAAGCATGCTGAAAGAGAGGAAGCCCATCGAC
AGAAAATAACTCACTCGGCTGCTCGTGCTGCGATTGGTGTGAGTCTGTTT
ACGTTTCGTTGCCCCGCGCCTCCACTAAGGCTACGCATACCCGTGCCCTT
TCGAGGGAAGCCAATCACGTAGTACCCGGCCAAAATACGAGTGTACCCCG
CCCTTCCTTTCTCCCTCTAACACGGAACGCCTATTCGATATACTCGTAGC
ATAGCATGGGGGTGGTATATTGCGTATACATATGCGGGGATTGCAGTGAC
GAACTACGGAGGGACAAGAAGTTTCTTTGTGTTTTCCTTGGGAGTGTAGT
AGATTGGTGGAGATTCATGGAGATTCGTTCTGGGTATTAAAGGGTTATGC
GTGACTTGATGCCGTGATGGAATGACGAGCTCAAGCACGCCCCCGATGAA
TACAACACGTTTTTCACCACGTCTACACGTCTTTACCTACCCGTGCGGCC
CGTCATGGCCGAGCTGCTCTACGCTCCCATCACACACAACTGAGCCACCC
GAATTATCGATCACGCTAGCGTATGACACGTCGTCTACGAGATTCGAGTC
GAGCTTAGTTTGGAGTATCGCTTTGCGGCGATCAGCAGCAGCCACCGATG
AGCGACACCGAGCAAGATCGAGTGAGCGCCCGACTAGCAGAGGAGGAAGC
CCGGATCAACTACTTGGTCGAACAGAGGGTAGAAGCAAGACTGGCCGAGA
TGTCGAGGCAAGAAGCAGAGGAGCGGAGGACAGATGACGTCCGGACCGGA
AGAGAGCACGAGGATCGCCACCAGCAACACGCGGGGCGGCCATCGGCCAA
CCCGACGACCGACGAAATCGCCCGCACACTCGCCGACGCCCTCACCGGTC
GACTTCACGTCTCATCAGGGGACATGGGTAAGAGTACCCATTAACGCAGG
GACGGTTCGAATGACTGAGACTAAGCGCCTAGCGCCTTGGGATGGTGTTT
TCAAGCAAGGGGAGGATGAGCAGGCTAAGTTTTTGATTTTTCGATCGAAC
ATGGTAGCTATGTTTGCCCAGGAAGGAGTGCGTGACGTAGTACTGACTGA
AGAAAAAATTCCAGTTGGGAAAGAAGGCGTGAGCATGGAGGAGATGCGTA
GGGTGCATTCGAGTGGACGGGTAGAAAAGGCAATAACGGCGTGGAACCTG
CTGATCACGACAGTGACATACATGCCAATCCTAACCCAGATCATCGCCGA
TGGGAGTCCTAGTGGAGGTTGGAAGATATTCCTCAATTATTACGAGCCGC
GTGCCAGGGCCGAAAAAGAAAGGCTGTCATCTCAATATCACGCTCTTGAG
ATGAAAGTAGGGGAGACCCCGCAAGAGTACTTCGGGAGATTTGCTGTTTT
GCGCAGTAGGCTCGCCTCGCACGGTGTTGTTTTCTCCGACGATGATGCCA
ATGC

Coding sequence (CDS) from alignment at chr_00:2001261..2006514+

>Ec-00_001790.2 ID=Ec-00_001790.2|Name=Ec-00_001790.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=669bp|location=Sequence derived from alignment at chr_00:2001261..2006514+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGTCCGGACCGGAAGAGAGCACGAGGATCGCCACCAGCAACACGCG
GGGCGGCCATCGGCCAACCCGACGACCGACGAAATCGCCCGCACACTCGC
CGACGCCCTCACCGGTCGACTTCACGTCTCATCAGGGGACATGGGTAAGA
GTACCCATTAACGCAGGGACGGTTCGAATGACTGAGACTAAGCGCCTAGC
GCCTTGGGATGGTGTTTTCAAGCAAGGGGAGGATGAGCAGGCTAAGTTTT
TGATTTTTCGATCGAACATGGTAGCTATGTTTGCCCAGGAAGGAGTGCGT
GACGTAGTACTGACTGAAGAAAAAATTCCAGTTGGGAAAGAAGGCGTGAG
CATGGAGGAGATGCGTAGGGTGCATTCGAGTGGACGGGTAGAAAAGGCAA
TAACGGCGTGGAACCTGCTGATCACGACAGTGACATACATGCCAATCCTA
ACCCAGATCATCGCCGATGGGAGTCCTAGTGGAGGTTGGAAGATATTCCT
CAATTATTACGAGCCGCGTGCCAGGGCCGAAAAAGAAAGGCTGTCATCTC
AATATCACGCTCTTGAGATGAAAGTAGGGGAGACCCCGCAAGAGTACTTC
GGGAGATTTGCTGTTTTGCGCAGTAGGCTCGCCTCGCACGGTGTTGTTTT
CTCCGACGATGATGCCAAT

Synonyms

The feature 'Ec-00_001790.2' has the following synonyms


Synonym
Esi0013_0153
Esi_0013_0153