Ec-00_001780.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001780.1
Unique NameEc-00_001780.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length92
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_001780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1987622..1990456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length276
Hectar predicted targeting categoryother localisation
Gene idEc-00_001780.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001780Ec-00_001780Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1987622..1990456 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001780.1.3Ec-00_001780.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1987622..1987650 -
Ec-00_001780.1.2Ec-00_001780.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1988055..1988214 -
Ec-00_001780.1.1Ec-00_001780.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1990370..1990456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001780.1CDS:Ec-00_001780.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1987622..1987650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001780.1Ec-00_001780.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1987622..1990456 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001780.1 ID=Ec-00_001780.1|Name=Ec-00_001780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=92bp
MPGPTLFRSDLLRSPPPYIDRLRTLERSTPGVNYTTNCPVGLGLFVSMVG
PAATRARVLAVGSTPASGRHGRRGVRGLSSCNDGSRTHDTD*
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spliced messenger RNA

>Ec-00_001780.1 ID=Ec-00_001780.1|Name=Ec-00_001780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=276bp|location=Sequence derived from alignment at chr_00:1987622..1990456- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGGCCCCACTCTTTTCAGGAGTGATTTGCTGCGGTCACCGCCCCC
CTACATAGACCGACTTCGAACTCTGGAACGATCCACGCCCGGTGTGAACT
ACACCACCAACTGCCCTGTCGGACTAGGACTCTTCGTGTCCATGGTTGGC
CCAGCGGCGACTCGGGCTCGGGTACTTGCTGTGGGTTCGACCCCTGCCAG
TGGCAGACATGGCAGGCGTGGTGTCCGCGGGCTTTCCTCCTGCAACGACG
GCAGCCGCACGCACGACACCGATTAG
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protein sequence of Ec-00_001780.1

>Ec-00_001780.1 ID=Ec-00_001780.1|Name=Ec-00_001780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=92bp
MPGPTLFRSDLLRSPPPYIDRLRTLERSTPGVNYTTNCPVGLGLFVSMVG
PAATRARVLAVGSTPASGRHGRRGVRGLSSCNDGSRTHDTD*
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mRNA from alignment at chr_00:1987622..1990456-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001780.1 ID=Ec-00_001780.1|Name=Ec-00_001780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2835bp|location=Sequence derived from alignment at chr_00:1987622..1990456- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCGGCCCCACTCTTTTCAGGAGTGATTTGCTGCGGTCACCGCCCCC
CTACATAGACCGACTTCGAACTCTGGAACGATCCACGGTGAGTGATAGTT
AAGAGGGGCGTACGCCGATCGAAATATGTACGGGATGAACGCACGTAGAT
CCTTCCAGGACCACCCTTTTTGGTATTGAGAAGTAGTAGCCGGTCGGTCA
TGGACAAGAAGAAAGCAAATCTAGGTTGTGTGCAATGGCTCGCGCTTTAG
GTATAACCAGGAAGACGTTGTATGCACTTTGCAAGATCGACACCGCAATA
TCTCCCCGAAGGTAGTGTCCGTCGAACCTGTTATTCGTCTACAAGTCAAA
GGCAATGAAATGCCGAAATTACACTACTTTTTCAGTACTAGTACAAACCA
CCCTGCACAAAACGGTTTCTCTACAGTAGTGCAGCAGAACTTGGCGGTTT
CGCGGACCGCCCAACTCGACGGAGCGGTAAACCGTCAAATATCCTAGTAC
ACCAGGTTGAGAGGTCGGTGAGGGGACGCAACAATAATGAATTGCCGAGG
GAGATGTAGAGTAGAATGCCCCCAACGTTTGTCGAGAATGATTCATTAGC
CTCGCGGTCATAGGTCTGATTCTTGTGGAACAGAATCCCACGGGAGTATT
TCATGCTGGGTGGGTGCAGATCAGGGAGAAAGGGCACGCAATTTTGAAGC
ACCCACTCGCCGAGAAGCACGGGAAGGAAATAAGTTGGTAGTCAAAGAGC
TCGAGGCGGTGCAGATGAAAGCAGCGAAAGTCGTCCTAGGATGCTCCAGG
CGCACAAGTAATGCAGCCGCCAGGGGCAGAACTGGGGATCCGATCCCTAC
GATCGGGAAGAGACGCAAGGAAGAATGACATGGCAGTATCGCATGCGCGG
TATGGTAGAAGCGAGGTTGCCGAGAATAGCTTGGGAGGCGAAGTGGGCAT
ACAAGAAGAGGAATAGACGACACACATGTAGAGCACGTATGGAAGGGGTT
CGAAATTGCCGAAGGTGAAACGCTGGAAACGGAGGGTCTAGAGGGGTTCA
AGGAAAGATATCTGTTGCTTTAGCCGAGAGAGAAGAACAGAACGTAACCA
AAGAAACGAAGGATAACGGGGGTCTGCATGTGTACGGAATGGTGAGAGAA
GCAATAGGGCTCACGGAGTTCCTACGTGGACCAATGATTGCAGGGACAAA
GCTGAAGGCCGAATCGAGGACCGGGGACATCGATTGGCCTTCGAGAACGT
AGGCGAAGATTTCGGAAGGTAGGTGCAGACGACGACAAGTTCAAGTGTGA
CTTCGGCTCGGACTGCGAACACCGTGTGCATGTACTTGCGGAATGTCCAT
TGTACAAGGAGAGGGAAGTAAGCATGACTGAGCTGGGAGAAAAAGAAGGA
TGCAGGGTGATGTTTGAGGCATGGAATAGCCAGGAGGAGACGGAAGGAAC
TGTACTGGGACATAGGACGTGGTTTGAAAAAGCGGGAAGTGCTATCGATA
GTATTGGTAGGCTGGGGAAAGCATTCTTGAGTCACCTTTGGCATAGGAAC
GATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTTGA
GGACGCGTGGTCAATGGTCTAACCACAGAGGTACGGAAAACATACGAGTA
ACGCCCCCCATGGGCACGCGCTCCTGCCGCCATCGGATTCCGGGAAAATA
GTTGATACTCATATTGTTTTAGACTATCGCTGCACGACCTATGCCTTATG
CATTTGTTACTCGTGGGTCCAGCAGCGCATGCAGAAGCCTCTATGTTCGG
AGACCACTCATTTTATAGAAAAAATGGAGAAATTGCGCGCCGGGACACAA
CTTAGAGTATATGGTGTGGACACAGAGACAAAGAGGGCGTCGGGTTTATG
CTGTCGATAAGTGCTGGTGCCCGAGCGCGGAACCATAAAGCGCTCTCGGT
TTCTTGCCCGGAGAGAGAGCGGGACAAAACCGGACAAATTGTCTGCCAAG
GCACATCAATGTACAGGAACAGGAGATATCTATGAGTGAGCAACAGCCTG
GATGAAAGACGAGGTATTTGTCAAACCCTTCAGTTCTCTTCGAACGTAGA
GATATGTATGTATGATACAGTACGATCCCTGACTAATTTTATAACGATAA
ATAGGTCTTCGTCTCCTCAAAAATGTCAACCGTTCACGCGGCGGAGTATC
GCATGAAATGCAAACCCGAGCCCTCTTGCATTCTGTGCACAGCCCGGTGT
GAACTACACCACCAACTGCCCTGTCGGACTAGGACTCTTCGTGTCCATGG
TTGGCCCAGCGGCGACTCGGGCTCGGGTACTTGCTGTGGGTTCGACCCCT
GCCAGTGGCAGACATGGCAGGCGTGGTGTCCGCGGGCTTTCCTCCTGCAA
CGGTAAGTGTAGTGAGATGGATGGAGGAGAGTAAGTGCGCGAGCAACGGA
GGAGGGCGAATCAAGAGAAAATTGCTCTTGATAATGAAAACGGACATCTA
GATCACTTTCACTGCGTAGGCCGCAGAGAATGTGGCAACAATAGTAAAGC
CCGGGCGGAACTCGCAAGAGGTTCACCCACAACGCGAAGGGGGACGCCGA
GAGTAGAGAAGATTGTCCTGTTACCCAAGAGGGAGAATCGAACTGTAGTA
GTACTTAGAACCGAGCTCACCTTTTACTCCTTTGCCCTGGTCCTCGTCCT
CGTCCTCGCCCTCGTCTTCGTTCTCGTCCTCCTCTGAAGCAAAAACCGCC
CGTCGGTTGTTTGACGCTATGGCGGCTCTGATACAAAATCTTACTGCACA
ATGTAGACGGCAGCCGCACGCACGACACCGATTAG
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Coding sequence (CDS) from alignment at chr_00:1987622..1990456-

>Ec-00_001780.1 ID=Ec-00_001780.1|Name=Ec-00_001780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=276bp|location=Sequence derived from alignment at chr_00:1987622..1990456- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCGGCCCCACTCTTTTCAGGAGTGATTTGCTGCGGTCACCGCCCCC
CTACATAGACCGACTTCGAACTCTGGAACGATCCACGCCCGGTGTGAACT
ACACCACCAACTGCCCTGTCGGACTAGGACTCTTCGTGTCCATGGTTGGC
CCAGCGGCGACTCGGGCTCGGGTACTTGCTGTGGGTTCGACCCCTGCCAG
TGGCAGACATGGCAGGCGTGGTGTCCGCGGGCTTTCCTCCTGCAACGACG
GCAGCCGCACGCACGACACCGATTAG
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Synonyms
The feature 'Ec-00_001780.1' has the following synonyms
Synonym
Esi013_0254
Esi_013_0254