Ec-00_001700.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001700.1
Unique NameEc-00_001700.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length579
Homology
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: D8LEC2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC2_ECTSI)

HSP 1 Score: 866 bits (2238), Expect = 1.180e-311
Identity = 578/578 (100.00%), Postives = 578/578 (100.00%), Query Frame = 3 
Query:  210 MHTPLLNSHHRDTGLLETLEKPDKEPSTSRQQDTVMSLSTHSGTRGRPPANRASCGNSTIPDITVRSPADGLPPRLAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDVIIELAFESDDESISNGSDDAPPAGRKLSKRGSFTSSDGXXXXXXXXXFPSPPSSPSPSRXXXXXXXXXXXXXTDERTHTAAGVTWLNNGAPGTGLPSLAPVLSVTVSSGXXXXXXXXXXXRSSKCPAVRSRGSSRGAKISSGGVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGPRKPRSSAMFGSIPGLGKVPPPVVTVATGAAVSTTLSLPERTSASXXXXXXXXXXXXXXXXXSRVTIPVPSRPLSASIPANSSSTHDGGGTSTVARLSLIGSGASWISDNDAPSPSTTSVDILGLGPHGSQKMDDLAILGDLLFGPDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYERGFSAGLASASNWGGGLCWDANGLSHLGPL 1943
            MHTPLLNSHHRDTGLLETLEKPDKEPSTSRQQDTVMSLSTHSGTRGRPPANRASCGNSTIPDITVRSPADGLPPRLAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDVIIELAFESDDESISNGSDDAPPAGRKLSKRGSFTSSDGXXXXXXXXXFPSPPSSPSPSRXXXXXXXXXXXXXTDERTHTAAGVTWLNNGAPGTGLPSLAPVLSVTVSSGXXXXXXXXXXXRSSKCPAVRSRGSSRGAKISSGGVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGPRKPRSSAMFGSIPGLGKVPPPVVTVATGAAVSTTLSLPERTSASXXXXXXXXXXXXXXXXXSRVTIPVPSRPLSASIPANSSSTHDGGGTSTVARLSLIGSGASWISDNDAPSPSTTSVDILGLGPHGSQKMDDLAILGDLLFGPDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYERGFSAGLASASNWGGGLCWDANGLSHLGPL
Sbjct:    1 MHTPLLNSHHRDTGLLETLEKPDKEPSTSRQQDTVMSLSTHSGTRGRPPANRASCGNSTIPDITVRSPADGLPPRLAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDVIIELAFESDDESISNGSDDAPPAGRKLSKRGSFTSSDGXXXXXXXXXFPSPPSSPSPSRXXXXXXXXXXXXXTDERTHTAAGVTWLNNGAPGTGLPSLAPVLSVTVSSGXXXXXXXXXXXRSSKCPAVRSRGSSRGAKISSGGVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGPRKPRSSAMFGSIPGLGKVPPPVVTVATGAAVSTTLSLPERTSASXXXXXXXXXXXXXXXXXSRVTIPVPSRPLSASIPANSSSTHDGGGTSTVARLSLIGSGASWISDNDAPSPSTTSVDILGLGPHGSQKMDDLAILGDLLFGPDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYERGFSAGLASASNWGGGLCWDANGLSHLGPL 578
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: A0A6H5K716_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K716_9PHAE)

HSP 1 Score: 709 bits (1831), Expect = 6.470e-250
Identity = 494/590 (83.73%), Postives = 506/590 (85.76%), Query Frame = 3 
Query:  177 QPSPHTPHPTPMHTPLLNSHHRDTGLLETLEKPDKEPSTSRQQDTVMSLSTHSGTRGRPPANRASCGNSTIPDITVRSPADGLPPRLAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDVIIELAFESDDESISNGSDDAPPAGRKLSKRGSFTSSDGXXXXXXXXXFPSPPSSPSPSRXXXXXXXXXXXXXTDERTHTAAGVTWLNNGAPGTGLPSLAPVLSVTVSSGXXXXXXXXXXXRSSKCPAVRSRGSSRGAKISSGGVGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGPRKPRSSAMFGSIPGLGKVPPPVVTVATGAAVSTTLSLPERTSASXXXXXXXXXXXXXXXXXSRVTIPVPSRPLSASIPANSSSTHDGGGTSTVARLSLIGSGASWISDNDAPSPSTTSVDILGLGPHGSQKMDDLAILGDLLFGPDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SYERGFSAGLASASNWGGGLCWDANGLSHLGPL 1943
            +PSPHTP PT  + PLLN HHRDTGLLETLEKP KEPSTS +  T+MSLST SGTRG+P ANRASC NSTIPDITVRSPADGLP RL IPHEPPKVPRRTPSKGNKRETLADIAKRIPV LMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVA+QLRQL+RRRDVIIELAFESDDESIS              KRGSF SSDG         FPSPPSSPS SRXXXXXXXXXXX  TDERT  AAGVTWLNNGAPGTGLPSLAPVLSVTV SGXXXXXXXXX     KCPA RSRGSS+ A+I S GVGSSXXXXXXXXXXXXXXXXXXX         KGPRKPRSSAMFGSI  L KVPPPVVTVATGA VSTTLSL ERTSA XXXXXXXXXXXXXXXXX        SRP SASIPAN S+ HDGGGT TV+RLSLIGSGASWISDNDAPSPSTTSVD LGLGPHGSQ+MDDLAILGDLLFGPDDA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SYERGFSAGLASASNWGGGLCWDANGLSHLGPL
Sbjct:    4 KPSPHTPLPT--YPPLLNVHHRDTGLLETLEKPGKEPSTSCRTPTLMSLSTSSGTRGQPSANRASCENSTIPDITVRSPADGLPHRLTIPHEPPKVPRRTPSKGNKRETLADIAKRIPVELMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVAEQLRQLHRRRDVIIELAFESDDESIS--------------KRGSFISSDGGGSSASSSSFPSPPSSPSLSRXXXXXXXXXXXTPTDERTPAAAGVTWLNNGAPGTGLPSLAPVLSVTVGSGXXXXXXXXX-----KCPAARSRGSSKVARIFSDGVGSSXXXXXXXXXXXXXXXXXXXSGTCGSGRSKGPRKPRSSAMFGSITSLRKVPPPVVTVATGAVVSTTLSLAERTSAXXXXXXXXXXXXXXXXXXXXXXXXXXSRPQSASIPANGSNNHDGGGTGTVSRLSLIGSGASWISDNDAPSPSTTSVDSLGLGPHGSQQMDDLAILGDLLFGPDDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYERGFSAGLASASNWGGGLCWDANGLSHLGPL 572
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: D7FN15_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN15_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 7.350e-51
Identity = 109/171 (63.74%), Postives = 125/171 (73.10%), Query Frame = 3 
Query:  357 ANRASCGNSTIPDITVRSPADGLPPRLAIPHEPPKVPRRTPSK-GNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDE-VDSVADQLRQLYRRRDVIIELAFESDDESISN--GSDDAPPAGRKLS 857
            + R+S  NS       R PA     RL IP EPP +P R  SK G+KRE LADIAKRIPV LMR YFNYPLR +AEAM ISVTTLKRLCRRHGVKRWPHRQI G+NRTL DLE QHD A+G+E + +V ++LRQL+RRR+VIIE AFESDDES  N  G+  +P   RK S
Sbjct:   14 SGRSSSKNSNNGTEDSRGPAVR---RLRIPDEPPTLPPRDVSKAGSKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRTLGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIERAFESDDESTRNKDGAHLSPGVRRKRS 181
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: A0A6H5KFL8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL8_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 3.840e-45
Identity = 99/137 (72.26%), Postives = 111/137 (81.02%), Query Frame = 3 
Query:  405 RSPADGLPPRLAIPHEPPKVPRRTPSK-GNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDE-VDSVADQLRQLYRRRDVIIELAFESDDES 809
            R PA G   RL IP EPP +P R  SK G+KRE LADIAKRIPV LMR YFNYPLR +AEAM ISVTTLKRLCRRHGVKRWPHRQI G+NR L DLE QHD A+G+E + +V ++LRQL+RRR+VIIE AFESDDES
Sbjct:   31 RGPALG---RLRIPDEPPTLPPRDVSKAGSKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRALGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIERAFESDDES 164
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: A0A6H5JLN8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN8_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.070e-37
Identity = 87/128 (67.97%), Postives = 99/128 (77.34%), Query Frame = 3 
Query:  432 RLAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTA--KGDEV----DSVADQLRQLYRRRDVIIELAFES 797
            RL IP  PP VPRR PSKGNKRETL DIA RIPV +MR YFNYPLR AAEAM+ISVTTLKRLCRRHGVKRWPHRQI GINR +  LE Q D A  +  E+    + V++Q+++L RRR V+IE AFES
Sbjct:  990 RLFIPETPPVVPRRPPSKGNKRETLGDIALRIPVTVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQAGRRNSEITIRNNQVSEQMQELLRRRQVMIEHAFES 1117
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: D8LNV2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV2_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.870e-32
Identity = 73/93 (78.49%), Postives = 76/93 (81.72%), Query Frame = 3 
Query:  432 RLAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTA 710
            RL IP  PP VPRR PSKGNKRETL DIA RIPV +MR YFNYPLR AAEAM+ISVTTLKRLCRRHGVKRWPHRQI GINR +  LE Q D A
Sbjct:  764 RLFIPETPPVVPRRPPSKGNKRETLGDIAHRIPVTVMRPYFNYPLRTAAEAMNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHLEFQQDQA 856
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: A0A6H5L9C1_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C1_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 6.240e-31
Identity = 71/125 (56.80%), Postives = 93/125 (74.40%), Query Frame = 3 
Query:  435 LAIPHEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDVIIELAFESDDES 809
            L +P  P K+ R+ P KG +RETL DIA+R+PV ++  YFN+ LR AA+AM ISVT+LKRLCRRHGVKRWPHRQ+ G+NRT++ LE +  T+   ++   A QL +LY RRD +I+LAF SDD S
Sbjct:   24 LNLPKTPRKLARQPPLKGTRRETLQDIARRVPVEVLLPYFNFSLRTAADAMCISVTSLKRLCRRHGVKRWPHRQLSGLNRTVSHLEERQATSNDPDI---ARQLARLYCRRDEVIDLAFTSDDNS 145
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.330e-15
Identity = 43/114 (37.72%), Postives = 70/114 (61.40%), Query Frame = 3 
Query:  489 NKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVADQLRQ----LYRRRDVIIELAFESDDESISN 818
            +KR+T  ++AKR+PV ++  +++ PL  AA  + +S+T LK+LCR++G+KRWPHRQ+  +N++L  LE   +   G   D  A  LR     L  +R++II+ A    D  + N
Sbjct:    1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLE---EKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLN 111
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: A0A835Z500_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z500_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.510e-12
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:  504 LADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAK------GDEVDSVADQLRQLYRRRDVIIE 782
            + DIA+ I    +R  F+ PL+ AA  +++SVTT+KRLCRR+ + RWPHRQ+ GI+  +  LE Q  TA        D+  +  +Q++QLYR R  +I+
Sbjct:    1 MDDIARNISASQLRSMFHLPLKVAARELNVSVTTMKRLCRRYKIPRWPHRQLKGIDARIYMLEQQIRTAMTGEHGGADKAQAAQEQIQQLYRNRAQLID 99
[Close]
BLAST of Ec-00_001700.1 vs. uniprot
Match: D8LCC6_ECTSI (Riboflavin kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC6_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.240e-11
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 3 
Query:  516 AKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDVIIE 782
            A R P+ L +       +   +AM ISVT+LKRLCRRHGVKRWPHRQ+ G+NRT++ LE +  T+   ++   A QL +LY RRD +I+
Sbjct:   19 ASRTPLNLPKTPRKLARQPPLKAMCISVTSLKRLCRRHGVKRWPHRQLSGLNRTVSHLEERQATSSDPDI---ARQLARLYCRRDEVID 104
The following BLAST results are available for this feature:
BLAST of Ec-00_001700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEC2_ECTSI1.180e-311100.00Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5K716_9PHAE6.470e-25083.73RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FN15_ECTSI7.350e-5163.74Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5KFL8_9PHAE3.840e-4572.26RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JLN8_9PHAE1.070e-3767.97RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LNV2_ECTSI1.870e-3278.49Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5L9C1_9PHAE6.240e-3156.80RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7T4_9STRA1.330e-1537.72RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A835Z500_9STRA8.510e-1241.41RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
D8LCC6_ECTSI1.240e-1148.31Riboflavin kinase n=1 Tax=Ectocarpus siliculosus T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1923852..1928368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog4792.ETI57471
Length1947
Hectar predicted targeting categoryother localisation
Gene idEc-00_001700.1
EggNOG free text desc.RWP-RK domain
EggNOG OGs2BI7W@1,2S1DN@2759,3Q9QQ@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001700Ec-00_001700Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1921323..1928395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001700.1Ec-00_001700.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1923852..1928158 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001700.1.4Ec-00_001700.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1923852..1925015 -
Ec-00_001700.1.3Ec-00_001700.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1926096..1926296 -
Ec-00_001700.1.2Ec-00_001700.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1927239..1927521 -
Ec-00_001700.1.1Ec-00_001700.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1928070..1928368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001700.1CDS:Ec-00_001700.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1923852..1925015 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0017005UTR:Ec-00_001700.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1928159..1928368 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001700.1 ID=Ec-00_001700.1|Name=Ec-00_001700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=579bp
MHTPLLNSHHRDTGLLETLEKPDKEPSTSRQQDTVMSLSTHSGTRGRPPA
NRASCGNSTIPDITVRSPADGLPPRLAIPHEPPKVPRRTPSKGNKRETLA
DIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQI
CGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDVIIELAFESDDES
ISNGSDDAPPAGRKLSKRGSFTSSDGGGSSASSSSFPSPPSSPSPSRSSS
FVSPPASPTPTDERTHTAAGVTWLNNGAPGTGLPSLAPVLSVTVSSGGGG
GGGGSSSSRSSKCPAVRSRGSSRGAKISSGGVGSSGSSGSYGKTSSGSMR
PHRPSGTSGSGRSKGPRKPRSSAMFGSIPGLGKVPPPVVTVATGAAVSTT
LSLPERTSASTSTSTSPVRADASTETSSRVTIPVPSRPLSASIPANSSST
HDGGGTSTVARLSLIGSGASWISDNDAPSPSTTSVDILGLGPHGSQKMDD
LAILGDLLFGPDDAAVAAAAAAGVRAQSSAATYPPPSSTTSPPSSSYERG
FSAGLASASNWGGGLCWDANGLSHLGPL*
back to top

spliced messenger RNA

>Ec-00_001700.1 ID=Ec-00_001700.1|Name=Ec-00_001700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1947bp|location=Sequence derived from alignment at chr_00:1923852..1928368- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTACATCAAACCCTCTACCACACCGCTACTAATCGGGCATCTTTTTTTCA
CGCTCGCTCTCTCCTGCTCTCTGAACGACTGTACAAGACTGCGCTGAATC
AAACGGGTAGTTTTCTTGCCGTTTCATGTGTCGGAGATTTTTTTTTTTTC
ATTCTGTACGTTTTTGGAGAATCTGGCAGCCATCACCCCACACCCCACAC
CCCACACCCCATGCACACACCGCTGCTGAACTCGCACCACAGAGATACCG
GACTGCTGGAGACTTTGGAAAAGCCGGACAAGGAGCCTTCGACGAGCCGA
CAGCAGGACACCGTCATGAGCCTCAGTACGCATTCGGGTACACGAGGCCG
GCCTCCGGCAAATCGCGCCTCGTGTGGGAATAGCACCATCCCCGACATCA
CCGTACGTTCGCCTGCCGATGGTTTACCTCCTCGCCTGGCCATCCCACAC
GAGCCTCCCAAGGTCCCACGCCGGACCCCCAGCAAGGGGAACAAGCGAGA
GACCTTAGCGGACATCGCAAAGAGGATTCCCGTGGGGCTCATGCGGCACT
ACTTCAACTACCCGCTTCGGGCAGCTGCGGAGGCTATGGACATCTCAGTG
ACGACTTTGAAGCGATTGTGTCGGAGGCATGGCGTCAAGCGATGGCCTCA
CCGCCAGATCTGCGGCATCAACCGCACGCTCAATGACCTCGAGACGCAGC
ACGACACCGCCAAGGGAGACGAGGTCGACTCGGTCGCTGATCAGCTTCGG
CAGCTATACAGACGCCGAGACGTCATCATTGAGCTGGCGTTCGAGAGCGA
CGACGAATCAATCAGCAACGGGTCCGACGATGCTCCGCCGGCCGGCCGCA
AGCTCAGCAAGCGCGGCAGCTTTACCTCCTCGGACGGGGGGGGCTCCTCG
GCATCGTCCTCCTCCTTCCCGTCGCCCCCCTCTTCTCCGTCTCCCTCGCG
GTCGTCTTCCTTTGTCTCACCGCCGGCCTCGCCCACGCCCACGGACGAAC
GCACGCATACTGCGGCTGGTGTGACGTGGTTGAACAACGGTGCCCCGGGG
ACGGGTCTGCCGTCTTTGGCGCCGGTCCTCTCCGTGACGGTCTCAAGCGG
CGGCGGCGGAGGCGGCGGAGGCAGCAGCAGCAGCAGGAGCAGCAAGTGTC
CCGCCGTAAGAAGCAGAGGTAGCAGCAGGGGCGCCAAAATTTCCAGCGGC
GGCGTCGGCTCGAGCGGCAGCAGCGGCAGCTACGGGAAGACCAGCAGCGG
GAGCATGCGTCCTCACCGGCCCAGCGGCACCTCCGGCTCTGGAAGGTCCA
AGGGGCCTCGCAAGCCGAGGTCGTCGGCGATGTTCGGCAGCATCCCGGGC
CTGGGGAAGGTGCCACCACCGGTCGTGACGGTGGCAACGGGTGCGGCCGT
TTCCACTACGCTAAGTCTCCCCGAGAGGACCAGCGCAAGCACCAGCACGA
GCACCTCCCCGGTCCGAGCAGACGCGAGTACCGAAACCTCTTCGCGTGTG
ACCATCCCGGTGCCTTCAAGACCTCTGTCGGCGTCGATTCCTGCGAACAG
CAGCAGCACCCACGACGGCGGTGGCACGAGCACCGTGGCGCGGCTTTCCC
TCATCGGCTCCGGCGCTTCCTGGATCAGCGACAACGACGCCCCCTCCCCG
AGCACCACCAGCGTCGACATCCTCGGGCTGGGGCCGCACGGCAGCCAGAA
GATGGACGATCTCGCGATCCTGGGAGACCTGCTGTTCGGCCCAGACGATG
CGGCTGTAGCGGCGGCGGCGGCAGCCGGTGTTCGGGCCCAGAGCTCGGCG
GCGACTTATCCCCCCCCCTCATCGACGACGTCGCCCCCCTCCTCGTCCTA
CGAGCGCGGGTTTTCCGCCGGGCTTGCCTCGGCATCGAACTGGGGCGGCG
GGCTTTGCTGGGACGCCAACGGCCTCAGCCACTTGGGTCCGTTGTAG
back to top

protein sequence of Ec-00_001700.1

>Ec-00_001700.1 ID=Ec-00_001700.1|Name=Ec-00_001700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=579bp
MHTPLLNSHHRDTGLLETLEKPDKEPSTSRQQDTVMSLSTHSGTRGRPPA
NRASCGNSTIPDITVRSPADGLPPRLAIPHEPPKVPRRTPSKGNKRETLA
DIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQI
CGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDVIIELAFESDDES
ISNGSDDAPPAGRKLSKRGSFTSSDGGGSSASSSSFPSPPSSPSPSRSSS
FVSPPASPTPTDERTHTAAGVTWLNNGAPGTGLPSLAPVLSVTVSSGGGG
GGGGSSSSRSSKCPAVRSRGSSRGAKISSGGVGSSGSSGSYGKTSSGSMR
PHRPSGTSGSGRSKGPRKPRSSAMFGSIPGLGKVPPPVVTVATGAAVSTT
LSLPERTSASTSTSTSPVRADASTETSSRVTIPVPSRPLSASIPANSSST
HDGGGTSTVARLSLIGSGASWISDNDAPSPSTTSVDILGLGPHGSQKMDD
LAILGDLLFGPDDAAVAAAAAAGVRAQSSAATYPPPSSTTSPPSSSYERG
FSAGLASASNWGGGLCWDANGLSHLGPL*
back to top

mRNA from alignment at chr_00:1923852..1928368-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001700.1 ID=Ec-00_001700.1|Name=Ec-00_001700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4517bp|location=Sequence derived from alignment at chr_00:1923852..1928368- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTACATCAAACCCTCTACCACACCGCTACTAATCGGGCATCTTTTTTTCA
CGCTCGCTCTCTCCTGCTCTCTGAACGACTGTACAAGACTGCGCTGAATC
AAACGGGTAGTTTTCTTGCCGTTTCATGTGTCGGAGATTTTTTTTTTTTC
ATTCTGTACGTTTTTGGAGAATCTGGCAGCCATCACCCCACACCCCACAC
CCCACACCCCATGCACACACCGCTGCTGAACTCGCACCACAGAGATACCG
GACTGCTGGAGACTTTGGAAAAGCCGGACAAGGAGCCTTCGACGAGCCGG
TGAGTTTGAGTCGATCTGTATCCTGCCGCACCCACCCGTGTGCGCCAGAG
TTCAGTAGCGTAGGCTCTGCATGGATGGTGATGACATCATATTAGATGGT
GTGGTTGTGCACATGAAGAATTTCACATCCGCGCGAGTTGGCGGCGCGCC
CAGCATCTATCTCCATGGACGAGGAGCAAAGGAATACATGGAAGGTGATT
GCAGTAGGTGTGGTTTGTGCAATACAACAGTGCAGCGGAGATCGCCAGCT
TTCGCGGTCATGGTTGGCGGCGGCGGCGCGTTGTGGCCGCCTTTACATGC
CCGAACTCTTCGGCCGAATTTGATTGCACAGATTACCTTCTTCGTTCGGT
AAAAGTGATGCGTTTGATTTATGCTTCGCCGACTCTCGCATGATGATGCA
ACTTGCCACACGTGCAGCTCTCCTTCCCTAGCGACTTCAGAGCACACGCC
GCCCCTAACAAACACCGATTAGCACTCCGTGCTACACTTACACCCTTCGC
CCCCCGGCTGTTGGAACGTTTCCCTCTCCTGGAACAACACGCACCAGACA
GCAGGACACCGTCATGAGCCTCAGTACGCATTCGGGTACACGAGGCCGGC
CTCCGGCAAATCGCGCCTCGTGTGGGAATAGCACCATCCCCGACATCACC
GTACGTTCGCCTGCCGATGGTTTACCTCCTCGCCTGGCCATCCCACACGA
GCCTCCCAAGGTCCCACGCCGGACCCCCAGCAAGGGGAACAAGCGAGAGA
CCTTAGCGGACATCGCAAAGAGGATTCCCGTGGGGCTCATGCGGCACTAC
TTCAACTACCCGCTTCGGGCAGCTGCGGAGGTACGTGTGTGTTCGTAACT
TTTACATTCGCATACGTTGCTGCCGGGTGCTCATGTTGCTGAGAACGAGG
CCATGTGTCTGGTGTGGTGTGCAGTGGTGGGGGAGGGAGTTATTTCTTCC
CATGGTGGTGATATGTCACATGGTGACCATCTTTCTTTTCCAGACACTCC
CTTCCATCCCCGGCCGGCAAGAATACTCAACTCAATCAACACCCCGTTGG
TGCGGACAGCAGTGGACAGAAGTGGGTGTGCCTGCACGCAAAGGAGGGCA
CACCTCGAACATAGCAGGTTATCAGAGGCACCGACTCACACATGCCCTTG
TCTGACCTAACGCGCCGGCGTTGGTGACGAGCTACACCGATTCCGTTATT
TTTACATCCGCCAACTTACATTCATGGTCCATGTACATGCCGCAAGCAAG
GGCCACCTCAATCTGCCGAAAAGCGAGCGAACAAATATTTGAGTGCAACA
ACCTATGCGTTTTTTTTTTTTTCGATATTTCGGTGTGGTCTAAATATTAA
ATATTTTGTCTAAAGGCAACGCCAAACCACCACCGACAGAAACTTTCCGG
TGGCGAAGAATTGGATGCTTGTGTCGGTGCCGTGTTTTTCGCCTTCATCA
TCTACGATAATTCTACAGCTGTAGTCCTTTTGCGTTGTCGTCTAACTCCG
TAGGCTACGATGAATATTTATTGTCCACCATGTACGTAGAGCAAATATGC
GAGAAAATAATCATGCGTCGGTCGACCGCGCCGTTGCTGCGGCCCACATG
AATTAAGGGAAAATAAATACTCCTTTCGTGGAGAAAAAAGCTCAGCTGGA
AAATAATCATTCCTGCGGGGTGCGAAGCGCGTAGCGCTGTTCCGTCACGA
GACCGACAGAACATATGCCATTCCGGTGATATTCTCTGCTGCATGTACTG
CTGTGTCCTCCGCACACACCAGGCTATGGACATCTCAGTGACGACTTTGA
AGCGATTGTGTCGGAGGCATGGCGTCAAGCGATGGCCTCACCGCCAGATC
TGCGGCATCAACCGCACGCTCAATGACCTCGAGACGCAGCACGACACCGC
CAAGGGAGACGAGGTCGACTCGGTCGCTGATCAGCTTCGGCAGCTATACA
GACGCCGAGACGTCATCATTGAGGTACGTCTTACTGTGTTGTCCACCTGT
TGGATTTCTTGCATGGCATGCGATTCGATCGGGCGGTCTTCAAGCCTTCG
CGTAGGCTCTTGGTGCCATGTTTGCGTTGTTTCACTGGCTTCATGCACGC
ACTTATTGGCATTTCCTCCCGCGTGACGTACGTTCACAGTTGCATCGTCA
GCGCTCGGATCAGCAGTCGGTTTGTGTGAAGCTCTACAGTATCAAGTGTC
AGCATGGATTTACCCGCCCGATTCGTGTTCAGCAGCGCTCGTGATGTCGG
CACAACGTGTGGCCACGTACAGTTTTTTCAGCCGGCGTGCCGAATATTAC
GGAACATCTATTATATCTCCCGGCGGTTTTCATCAAATGCCTTGCTGCCT
GCTGCCAACTCCCAATAATAGATTCAGTTCATGAAATTGAGCTGAAATCC
GTCGATAATTTGCGGGCGGGTTATTTCGCACTCTTTGTTCGGCATTTCAT
ACCCCTGATGTACGATGGTGGTATGCTATAATAGACCCACCCACAGGATG
CAATGTGCGAGTGCGTATCGCTATACTTCGAAGTACTTCGTAATTGTTTT
TTTCTTGAACGTGTTTTTTTGTGCGTCGATAATCGCAGATGTAGACATAG
CACTAGATACTTCCTCTTGAACATCACGCACGCATCTCTCAAAACGCCTA
TGTATCGACGCAGTTAAGCATTTCTGCCAGCACTTTGTATATATATCGAG
GGTCGTTCTGCATGAATCGTGAAGTTTTTCCACGTTCTTACTCTTTGCAC
GTACGTATTGCGTTGGAACCCTCTTTCCGGGCGATATTTTTTTTGCTGCT
CTGATTCTTGAACAAGAGCTTCAGCATAGGTGAGACGTCTTTTTGGGGTA
TAAATTTAGGACCAAAGAAAACCCTTTTTGTTGGAATGGACAACAGCTTT
TCACAGGTGATACCTATTTATACCATTGCAACCTCGACAAGACAACGGTC
GACGAACAAAGACGCGGAACTACGAGCGAACACCGGTTACTCTGTGTCAT
GTACCGTTTGCGGACTGCCTCACCACCCCTCATACCCGTCTTCGTCCACG
CAGCTGGCGTTCGAGAGCGACGACGAATCAATCAGCAACGGGTCCGACGA
TGCTCCGCCGGCCGGCCGCAAGCTCAGCAAGCGCGGCAGCTTTACCTCCT
CGGACGGGGGGGGCTCCTCGGCATCGTCCTCCTCCTTCCCGTCGCCCCCC
TCTTCTCCGTCTCCCTCGCGGTCGTCTTCCTTTGTCTCACCGCCGGCCTC
GCCCACGCCCACGGACGAACGCACGCATACTGCGGCTGGTGTGACGTGGT
TGAACAACGGTGCCCCGGGGACGGGTCTGCCGTCTTTGGCGCCGGTCCTC
TCCGTGACGGTCTCAAGCGGCGGCGGCGGAGGCGGCGGAGGCAGCAGCAG
CAGCAGGAGCAGCAAGTGTCCCGCCGTAAGAAGCAGAGGTAGCAGCAGGG
GCGCCAAAATTTCCAGCGGCGGCGTCGGCTCGAGCGGCAGCAGCGGCAGC
TACGGGAAGACCAGCAGCGGGAGCATGCGTCCTCACCGGCCCAGCGGCAC
CTCCGGCTCTGGAAGGTCCAAGGGGCCTCGCAAGCCGAGGTCGTCGGCGA
TGTTCGGCAGCATCCCGGGCCTGGGGAAGGTGCCACCACCGGTCGTGACG
GTGGCAACGGGTGCGGCCGTTTCCACTACGCTAAGTCTCCCCGAGAGGAC
CAGCGCAAGCACCAGCACGAGCACCTCCCCGGTCCGAGCAGACGCGAGTA
CCGAAACCTCTTCGCGTGTGACCATCCCGGTGCCTTCAAGACCTCTGTCG
GCGTCGATTCCTGCGAACAGCAGCAGCACCCACGACGGCGGTGGCACGAG
CACCGTGGCGCGGCTTTCCCTCATCGGCTCCGGCGCTTCCTGGATCAGCG
ACAACGACGCCCCCTCCCCGAGCACCACCAGCGTCGACATCCTCGGGCTG
GGGCCGCACGGCAGCCAGAAGATGGACGATCTCGCGATCCTGGGAGACCT
GCTGTTCGGCCCAGACGATGCGGCTGTAGCGGCGGCGGCGGCAGCCGGTG
TTCGGGCCCAGAGCTCGGCGGCGACTTATCCCCCCCCCTCATCGACGACG
TCGCCCCCCTCCTCGTCCTACGAGCGCGGGTTTTCCGCCGGGCTTGCCTC
GGCATCGAACTGGGGCGGCGGGCTTTGCTGGGACGCCAACGGCCTCAGCC
ACTTGGGTCCGTTGTAG
back to top

Coding sequence (CDS) from alignment at chr_00:1923852..1928368-

>Ec-00_001700.1 ID=Ec-00_001700.1|Name=Ec-00_001700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1737bp|location=Sequence derived from alignment at chr_00:1923852..1928368- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACACACCGCTGCTGAACTCGCACCACAGAGATACCGGACTGCTGGA
GACTTTGGAAAAGCCGGACAAGGAGCCTTCGACGAGCCGACAGCAGGACA
CCGTCATGAGCCTCAGTACGCATTCGGGTACACGAGGCCGGCCTCCGGCA
AATCGCGCCTCGTGTGGGAATAGCACCATCCCCGACATCACCGTACGTTC
GCCTGCCGATGGTTTACCTCCTCGCCTGGCCATCCCACACGAGCCTCCCA
AGGTCCCACGCCGGACCCCCAGCAAGGGGAACAAGCGAGAGACCTTAGCG
GACATCGCAAAGAGGATTCCCGTGGGGCTCATGCGGCACTACTTCAACTA
CCCGCTTCGGGCAGCTGCGGAGGCTATGGACATCTCAGTGACGACTTTGA
AGCGATTGTGTCGGAGGCATGGCGTCAAGCGATGGCCTCACCGCCAGATC
TGCGGCATCAACCGCACGCTCAATGACCTCGAGACGCAGCACGACACCGC
CAAGGGAGACGAGGTCGACTCGGTCGCTGATCAGCTTCGGCAGCTATACA
GACGCCGAGACGTCATCATTGAGCTGGCGTTCGAGAGCGACGACGAATCA
ATCAGCAACGGGTCCGACGATGCTCCGCCGGCCGGCCGCAAGCTCAGCAA
GCGCGGCAGCTTTACCTCCTCGGACGGGGGGGGCTCCTCGGCATCGTCCT
CCTCCTTCCCGTCGCCCCCCTCTTCTCCGTCTCCCTCGCGGTCGTCTTCC
TTTGTCTCACCGCCGGCCTCGCCCACGCCCACGGACGAACGCACGCATAC
TGCGGCTGGTGTGACGTGGTTGAACAACGGTGCCCCGGGGACGGGTCTGC
CGTCTTTGGCGCCGGTCCTCTCCGTGACGGTCTCAAGCGGCGGCGGCGGA
GGCGGCGGAGGCAGCAGCAGCAGCAGGAGCAGCAAGTGTCCCGCCGTAAG
AAGCAGAGGTAGCAGCAGGGGCGCCAAAATTTCCAGCGGCGGCGTCGGCT
CGAGCGGCAGCAGCGGCAGCTACGGGAAGACCAGCAGCGGGAGCATGCGT
CCTCACCGGCCCAGCGGCACCTCCGGCTCTGGAAGGTCCAAGGGGCCTCG
CAAGCCGAGGTCGTCGGCGATGTTCGGCAGCATCCCGGGCCTGGGGAAGG
TGCCACCACCGGTCGTGACGGTGGCAACGGGTGCGGCCGTTTCCACTACG
CTAAGTCTCCCCGAGAGGACCAGCGCAAGCACCAGCACGAGCACCTCCCC
GGTCCGAGCAGACGCGAGTACCGAAACCTCTTCGCGTGTGACCATCCCGG
TGCCTTCAAGACCTCTGTCGGCGTCGATTCCTGCGAACAGCAGCAGCACC
CACGACGGCGGTGGCACGAGCACCGTGGCGCGGCTTTCCCTCATCGGCTC
CGGCGCTTCCTGGATCAGCGACAACGACGCCCCCTCCCCGAGCACCACCA
GCGTCGACATCCTCGGGCTGGGGCCGCACGGCAGCCAGAAGATGGACGAT
CTCGCGATCCTGGGAGACCTGCTGTTCGGCCCAGACGATGCGGCTGTAGC
GGCGGCGGCGGCAGCCGGTGTTCGGGCCCAGAGCTCGGCGGCGACTTATC
CCCCCCCCTCATCGACGACGTCGCCCCCCTCCTCGTCCTACGAGCGCGGG
TTTTCCGCCGGGCTTGCCTCGGCATCGAACTGGGGCGGCGGGCTTTGCTG
GGACGCCAACGGCCTCAGCCACTTGGGTCCGTTGTAG
back to top
Synonyms
The feature 'Ec-00_001700.1' has the following synonyms
Synonym
Esi0013_0140
Esi_0013_0140
NIN-like 6