Ec-00_001600.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_001600.1
Unique Name	Ec-00_001600.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	389

Homology

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BLAST of Ec-00_001600.1 vs. uniprot
Match: D8LEB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB3_ECTSI)

HSP 1 Score: 601 bits (1550), Expect = 2.380e-204
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 2

Query:  107 MTELRRSSRVRQSAKHASTYYIPDEKNSLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLHGGLTDPAEIAAAKQSLRANSKASTRFKSRNRMGSGARLSTLRRSSGSVQDNSNFGGAAGGGSSWGXXXXXXXXXXXXXXXXXXXXXXXVDPSPAAXXXXXXXXXXXXXXSGDREAPFSGGMLGVDDDSSKVGESGDGSXXXXXXXXXXXXXXGEDDGAGGGRKRPAAAMEPGSEDVGEPPLQSRRISPGEKPSQSQPKGDGGQEETAPSSGVSPSQSTTPDCPPPAREGESEGDDNGKXXGGSSQDVSRSSSLSQAPEQRKEVESAEIVAVGAKQSVGAGGAAGDSATVVGDGDGGRCSAGADTGAKTAVVQQSWGVCDR 1270
            MTELRRSSRVRQSAKHASTYYIPDEKNSLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLHGGLTDPAEIAAAKQSLRANSKASTRFKSRNRMGSGARLSTLRRSSGSVQDNSNFGGAAGGGSSWGXXXXXXXXXXXXXXXXXXXXXXXVDPSPAAXXXXXXXXXXXXXXSGDREAPFSGGMLGVDDDSSKVGESGDGSXXXXXXXXXXXXXXGEDDGAGGGRKRPAAAMEPGSEDVGEPPLQSRRISPGEKPSQSQPKGDGGQEETAPSSGVSPSQSTTPDCPPPAREGESEGDDNGKXXGGSSQDVSRSSSLSQAPEQRKEVESAEIVAVGAKQSVGAGGAAGDSATVVGDGDGGRCSAGADTGAKTAVVQQSWGVCDR
Sbjct:    1 MTELRRSSRVRQSAKHASTYYIPDEKNSLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLHGGLTDPAEIAAAKQSLRANSKASTRFKSRNRMGSGARLSTLRRSSGSVQDNSNFGGAAGGGSSWGXXXXXXXXXXXXXXXXXXXXXXXVDPSPAAXXXXXXXXXXXXXXSGDREAPFSGGMLGVDDDSSKVGESGDGSXXXXXXXXXXXXXXGEDDGAGGGRKRPAAAMEPGSEDVGEPPLQSRRISPGEKPSQSQPKGDGGQEETAPSSGVSPSQSTTPDCPPPAREGESEGDDNGKXXGGSSQDVSRSSSLSQAPEQRKEVESAEIVAVGAKQSVGAGGAAGDSATVVGDGDGGRCSAGADTGAKTAVVQQSWGVCDR 388

[Close]

BLAST of Ec-00_001600.1 vs. uniprot
Match: A0A835ZBY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.210e-9
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 2

Query:  107 MTELRRSSRVRQSAKHASTYY--IPDEKNSLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLH 310
            MTELRRS RVRQSA+  +  Y     E+ S+ +   +R R W+  +V  G F VK+W+P+ QQHLTA LH
Sbjct:    4 MTELRRSVRVRQSARGGTETYNDFIVEEASVLAFKDIRAREWQKVEVQLGTFKVKKWVPKSQQHLTAELH 73

The following BLAST results are available for this feature:

BLAST of Ec-00_001600.1 vs. uniprot

BLAST of Ec-00_001600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LEB3_ECTSI	2.380e-204	100.00	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835ZBY9_9STRA	2.210e-9	48.57	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:1815260..1822136 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	3201
Hectar predicted targeting category	other localisation
Gene id	Ec-00_001600.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_001600	Ec-00_001600	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 1815260..1822355 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001600.1	Ec-00_001600.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 1815367..1820209 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001600.1.1	Ec-00_001600.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1815260..1815394 +
Ec-00_001600.1.2	Ec-00_001600.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1817509..1817606 +
Ec-00_001600.1.3	Ec-00_001600.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1817957..1818073 +
Ec-00_001600.1.4	Ec-00_001600.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1818558..1819072 +
Ec-00_001600.1.5	Ec-00_001600.1.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 1819801..1822136 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001600	5UTR:Ec-00_001600.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 1815260..1815366 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001600.1	CDS:Ec-00_001600.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 1815367..1815394 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_001600	3UTR:Ec-00_001600.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 1820210..1822136 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:1815260..1822136+
coding sequence from alignment at chr_00:1815260..1822136+

mRNA sequence

>Ec-00_001600.1 ID=Ec-00_001600.1|Name=Ec-00_001600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=389bp
MTELRRSSRVRQSAKHASTYYIPDEKNSLFSTPGVRPRGWRTADVAAGYF
TVKRWMPRDQQHLTAGLHGGLTDPAEIAAAKQSLRANSKASTRFKSRNRM
GSGARLSTLRRSSGSVQDNSNFGGAAGGGSSWGAGRGSDAGTGGGGGSAA
GSGVSGVDPSPAASPSPPPAAAPAAAPSGDREAPFSGGMLGVDDDSSKVG
ESGDGSKGAGEGGEGGEGGRGEDDGAGGGRKRPAAAMEPGSEDVGEPPLQ
SRRISPGEKPSQSQPKGDGGQEETAPSSGVSPSQSTTPDCPPPAREGESE
GDDNGKGKGGSSQDVSRSSSLSQAPEQRKEVESAEIVAVGAKQSVGAGGA
AGDSATVVGDGDGGRCSAGADTGAKTAVVQQSWGVCDR*

spliced messenger RNA

>Ec-00_001600.1 ID=Ec-00_001600.1|Name=Ec-00_001600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3201bp|location=Sequence derived from alignment at chr_00:1815260..1822136+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCGTGCATTTGGGCCGTGCAAGCGCGCCGTGCGTTTTGGTTTGCTCTACA
ACAGACAAAGGCTGGCGTGCCGAGAGGGCGAGGACGAGCGGTCGCTAGGG
AGTAGGGATGACAGAGCTGAGAAGGTCATCCAGAGTTCGCCAGTCAGCAA
AGCACGCCTCCACATACTACATTCCCGATGAGAAGAACAGTCTTTTCTCC
ACTCCGGGGGTCCGACCGAGGGGGTGGCGGACGGCAGATGTTGCGGCAGG
TTACTTTACGGTGAAGCGATGGATGCCCAGGGATCAGCAGCACCTGACGG
CTGGGCTACACGGCGGCCTGACGGACCCAGCCGAGATTGCTGCCGCCAAG
CAATCGCTTCGAGCAAACAGCAAGGCCTCCACCAGGTTCAAATCGAGAAA
CAGGATGGGCAGCGGGGCACGGCTGTCTACGCTGAGACGGTCGTCTGGTA
GCGTTCAAGACAACAGCAACTTCGGTGGTGCTGCGGGGGGGGGGTCGTCT
TGGGGTGCCGGGCGGGGAAGCGACGCAGGAACCGGAGGTGGAGGTGGCAG
TGCCGCCGGCAGCGGCGTTAGCGGGGTGGATCCATCACCGGCTGCATCCC
CTTCCCCCCCGCCCGCTGCTGCGCCGGCCGCTGCACCGAGTGGTGACCGT
GAAGCACCGTTCTCAGGGGGGATGCTTGGCGTTGACGACGACAGCAGTAA
GGTTGGCGAGAGCGGCGACGGCAGCAAGGGTGCCGGTGAGGGCGGTGAGG
GCGGTGAGGGCGGTCGTGGTGAAGATGATGGTGCTGGTGGTGGCCGGAAG
CGGCCGGCGGCAGCGATGGAGCCTGGGTCGGAGGATGTGGGGGAGCCGCC
CCTGCAGTCGAGAAGGATTTCTCCCGGAGAGAAGCCGTCGCAATCGCAAC
CAAAGGGCGATGGCGGCCAGGAGGAAACCGCACCATCCTCCGGTGTTAGC
CCATCGCAATCGACCACTCCCGATTGTCCTCCTCCAGCTCGGGAGGGTGA
GAGTGAGGGGGACGATAACGGCAAGGGCAAAGGTGGTAGCAGCCAGGACG
TGTCACGCTCGTCTTCGCTATCGCAAGCACCGGAGCAGCGGAAGGAGGTG
GAGTCGGCAGAGATCGTTGCTGTCGGGGCGAAGCAGAGCGTGGGGGCGGG
CGGGGCCGCGGGCGATTCAGCGACCGTTGTCGGGGATGGTGACGGGGGTA
GGTGCAGCGCAGGGGCCGACACGGGGGCAAAGACGGCCGTGGTGCAGCAG
TCATGGGGGGTGTGTGATAGATAGGACATTGCCGTTCTTGTGGAATGATA
GGAGTGTTAAAGCGAGGCTGGTCTGTTGCCTTTTAAGAACGAGGCAAATG
GGCTTTTTGCTACCCTAGCCTCCGTTGTCGCTTCTTGGGGCGGCGGCGGT
GGCTGCGATTAGCTTCCGGTGTTGCTTGCTTGCAGGAGCGTATTGTCCTG
TTTTTGTGCATACATTGGTGTCTCGTTTGCATTATTTTATCCCATGCGTG
TTGGTTGCAGGCTTGCGTGTGAGTACTTTTTTGGTGAATATACACAGGAG
GAATACCAGTAGGCGGATCCGAAAGCGTTTAAATATTTTTATTCTTCTGT
TTGGTGAAATGTTTCTCTGCGTGCATCGTGTTTCTCTTTGAGAAGAGAGA
CCACGATAGGCGGTGGGCAGAAGGGGTCCGTTTACGATGTTTTGAAACGC
TTGTACTGCTTGGTTTGTTGGTTCTTGGGGTCCTCTCTCATTCCGATGCG
TTGTAGACAGTCGGAGGATGTAGTCAGTCTGCACAGCAGTTGCACATATA
CGCGCGTTTAGTTTGTGCTTGTGTCTGCCAACCGAGCGCCTGCTGTGTTG
TACAGTCCGTTTTATTGTGTCGTTCGAATAGGAAGGTGCGGAAACGGCAT
CCGCGGTGTTCTTTTTGGCGTATGTGCGAACCCCTGTCGAATGGAAGGTT
TTCAGGCTGTTTTGCTTGTCAGCGAGGAGCCTGCCCGTTAGGGGGCGGCG
TAGAAGTGCCCTCTCCCAGCGAGATTTTTGTTTGTTCTGTTTCACAATGT
CTGGTACACATGCATGTTTTTGATGTTTCTCTTCGGTGTTTTTTTTTTTT
TGTGGGGGTTGATTCGAGTGCCTAGGTGAAGGTACAAGACAGCGAATCTA
GTGCGTGTTTCCCTTGATGTTCAGACAAAGGATCAGCAGTAGAGCGAACA
GTCAATAGCGTAGGACTTTGGCGAGCGCTCTCTCTCTATGTCGGCTTTGT
TTCTACATTTGTTTTACAACGACCATCCAGTGCTTGCAGTTCGTTTGGTT
GAGGTCGCGATTGTTCGGTTTCTCGGAGCCTTGGTTTGCGCCGGGAAACT
TGTTCGAACGGTACCTTGCGTGCCCCGCATGAGGCACGAAAGGTGTTGTT
TCTTGCGAGACAAGGTGTGTATGGTTGTATGCTGTCGTTCCGGATACATG
CAATACATGGGTGGTCGTGTGGGACCCAGTCTGTGCCGGGACCCTGTCAG
GATTTTGTTTCTGTAGCCTTTTCCCTTCTGATGGTAACCGCGACGAGAGA
GACGCTGTAACGCTTTGTAGAGTGCTATGGTAATTAGCGATACTGTCTGC
TGTCGCACGGCGGTGGTTTGCCGTCTCTCTGCGGAGATATGTACTAGCTG
TTGTACTGTTTTCTTGAATCGTCGCAGTAATGTGCCGGTTTTTTTTTGCG
CGTACGACGTTTATTTCTGTTTGGAGGCTACTGGGCGCTGGAGTTCCTAG
TAGCGAGATGAAAAATGCACCAATCACTCATGAAAAGCAAGAAGCGTTGT
GATTGGCCGGTGTGTGGCATCAGCTACGGAAAAGGAAGGGAGGAACTTGG
TTTATTTTTATTATTTCCCCGTTTTTGTTGTGCGATTTCGCGCACAAAAT
AGGTTGACAAAGTAATAGGGTTGACCGGCATTCGCCTGGCCGCGTTTGTT
TAGCGTCCAGAACAAGCTCAGCTCGAAATTCTCTTGGCTACAAGCGTCTC
TTTTGTTCTTGGAAGTATGCTACCGTATGCATTACATTAAAGAATGACTA
TAATATGATAAACCGGAGGGACTACGTTGAAGTCTACACTACCCTTGGAG
TGAAACATATCGAGACAAAGTACTAATGAACACGACACGCGCTTCCTTCC
CCCCGATTTAATTTCTCTGTTCCCTCTAGGGGATGAACCTCCTTTCACAC
A

protein sequence of Ec-00_001600.1

>Ec-00_001600.1 ID=Ec-00_001600.1|Name=Ec-00_001600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=389bp
MTELRRSSRVRQSAKHASTYYIPDEKNSLFSTPGVRPRGWRTADVAAGYF
TVKRWMPRDQQHLTAGLHGGLTDPAEIAAAKQSLRANSKASTRFKSRNRM
GSGARLSTLRRSSGSVQDNSNFGGAAGGGSSWGAGRGSDAGTGGGGGSAA
GSGVSGVDPSPAASPSPPPAAAPAAAPSGDREAPFSGGMLGVDDDSSKVG
ESGDGSKGAGEGGEGGEGGRGEDDGAGGGRKRPAAAMEPGSEDVGEPPLQ
SRRISPGEKPSQSQPKGDGGQEETAPSSGVSPSQSTTPDCPPPAREGESE
GDDNGKGKGGSSQDVSRSSSLSQAPEQRKEVESAEIVAVGAKQSVGAGGA
AGDSATVVGDGDGGRCSAGADTGAKTAVVQQSWGVCDR*

mRNA from alignment at chr_00:1815260..1822136+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_001600.1 ID=Ec-00_001600.1|Name=Ec-00_001600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6877bp|location=Sequence derived from alignment at chr_00:1815260..1822136+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCGTGCATTTGGGCCGTGCAAGCGCGCCGTGCGTTTTGGTTTGCTCTACA
ACAGACAAAGGCTGGCGTGCCGAGAGGGCGAGGACGAGCGGTCGCTAGGG
AGTAGGGATGACAGAGCTGAGAAGGTCATCCAGAGGTGAGCTGTCGGCGT
CGAATCATTGCTTTTATACCCATCTCTCTTGCCGTGTGTTGGGCGACCAT
TGTTGACTACAGCAGCAGTGACCCTACCGCTTTCGAAGAGGCCAGACCGA
TGTTCTTCGGCAGTACGTATGGCAGCAGTCCATGGCTAACGGTCTTTGCC
AAAATTACGAGTCCGCCCTGTGCTGCCTGTTGCTCGCTGCCAGTCTTGTC
CAGCACAGGAAGCCTTCCCCTTACTGCCGTTGCACATCACAGCATACACC
ACACTCGTTTTAAACGGTTATTTCTATTCGGAGGCCGGAAAGTCGACCCG
TAAAAACTCCAAAAACGAAGAGACCATCGCACACTGGCCGTCGCAAGCCT
ATGATTTGCGCGCGCACCACATCCGCTGCCTCGGCTGCTGTCGCGCATAA
AACAAGGCGCACACCACTACGTTGGCCTCTTACGTGAACGACTACTACAG
CGTTGCGCGGAAAGTCATATGGCGAGTTCCGCTATATACGAATCGGACGA
TCGTTTTGTGCCAGTGTCCGGAGGTTCGAAAAAGTAGCGATTGCACTCTG
GAAGAAGTATAATTTCGTCCCTGAGATTCGATCGATGCCACTTTCGCGGG
ACCGCTCGGCTCCCGGCTAAGAAACGGCGTAATGTTTCCTGTTGCAGTTC
GATTCTTGGGTGTGATTGTGAAGTAAGTTATGTTCCATCCTCGTCGTCGA
AAAGATCACGGAACAATGCTGTGAATATGTGTGTGTGTGCAGTTTGCCAA
TTTCATCGAGATGGTACATACCCATAGGCAGCAGTGATGGGACCAAATAG
GTATCACTTGTGCCTGCCGTGGTAAATCCAGTTCATGTGTGGACGAGGAG
GATAGTATTCATATTTGTGCGTGACCGGTCGCTGTTGTTTCTCTCCGTTG
GTTTTTGTGGTCGTCTGTCATCACTAGCGTTTACGATTTATTGGGTTTTG
CTCGGTCCGTTTTTCATATTCGATTCTTGTTGATATGCATATGCATACAA
TATGCAGCTAGGTATTATATCCATCCAACTTTACAAATACTGCTGACTTG
AAGAAATTTCCTCTTATGAACACCAGCCTCGAGCGCCAATGCCGGCACAT
CCTCCTAGGACGTACATGCCGCCGACCTGGCGCCTATCGTGTGGGTTTGG
GATTAGCGTTAGGGTTTCTAGCGCCTGCCGAAGCAGATAATCCTACAATA
TATTTAGTGCCGCGGTCGAAGGGGCCACACGGCGCTATAGACTAGTACGC
AAATTTTACCCTTTTTGTTCCGACATGGGGTGTTCTGGTCCTGTGAAGGG
TATGGGTGTGTGGCTTATGTGCACACTCTTGTGTGGTTGGCCTGTGGCCA
CGGAAGGCGTCGGTCAGGGTGGACCGGTATGGATATTAGAAGGTACACTG
CTGTACTGAGCGGAGACGGAAACGGTTTTTATTAATGTCAAGACAAGACA
AACAAGGACCAGCCAGTGGTCGGTATCCCGTAGGAACCGTTGGGGGATAA
GTATTTAGAGAAGGTACTGGCGTGTAGATGTAGTACTCGAAAGCAGTGTG
CGAAAAGGAAGTACACTAGTGTATTGGTTATACCAGAAGTACTGCTGCAA
GATGCTAGCCTAGTTGGCAGGTTGGGTTGGCGAGAGGATGTCGCCATTAG
GGCGAGATGAGAGAAAAACTAGGGTACAACCGTGGACGCACGTGCTGTGT
CGGGAACATTAACATTTACCAGTAACACGTTGCTGTATTTGGCCGCTTAC
AAGCGTGCGGCGAGAGGGAACCCGAGGGAAACCGTGTGAACACCAGAATC
TTGTTTGCCGTGTCGATAGTAGTAGTGCAGTAGTTGTGGGGGTCCCTTTT
CAAGAACGCGCTGTGGGTTGTTTTAGCCCCCGGGTGTTCCGTGAGGAGGG
GGAGCAAGACACACAAGCTACTTTCTTCGACACAGACACGATATTTGGTT
GGTTAACAAAATTTCGATGAAACACTCAATCCTTCAAAGCTTGGTGAGTC
CGGAGGAATCCAATCCCCTTCCCGTACTTCTGTAGGCCAAGACTGCACCA
TTGCGCGAGTCCCACGAATTTCCTCTCCCTGCTGTTTTTGTAACTGCAGT
TCGCCAGTCAGCAAAGCACGCCTCCACATACTACATTCCCGATGAGAAGA
ACAGTCTTTTCTCCACTCCGGGGGTCCGACCGAGGGGGTGGCGGACGGTG
AGTGCAGCAGTATAAGCAGCAGTAGGAGGTGTTGTTGTTGTTGTTGTTGA
CTTTTTCTGATTGTAGGAACAGCAGCAGTACGAGCGTGTTGTTGTTATTC
TTGTTGCTAGTGCTGTTGTTGTCTTCTTTAGGGGCGTGTGTCGCTGCTGC
GCGGCGGTTTACCGGCTTGGTCCGTTGTCGACCTCCTTCGCCTGACGACG
TTTGTATGATCATACCCACGTGACGTGTACACGCACAAGATGGCACTTTC
GAGAAATGCATGTCTGTCGCAGAAGAACCACTCTCACCCCCGCATGCACG
CCTACTCCCGCTGCTGCTCCGATGCCACGTTTGTCTACCTGAAACAGGCA
GATGTTGCGGCAGGTTACTTTACGGTGAAGCGATGGATGCCCAGGGATCA
GCAGCACCTGACGGCTGGGCTACACGGCGGCCTGACGGACCCAGCCGAGA
TTGCTGCCGCCAAGGTTTGGACTGCGGTAATATTACACGAAGAAAATCGT
CTGAGAGAGAGCGAGACCAGAAGGAATAGCACTGCTGTGCTGTAATCGAA
GGCGGGCGCGCGCACACGGCTTCGCGCTGCGCCTCCATTTTCGAGCAGGC
AGTAGCGGACCTTGCTCTGTGGCGCGTTTAGCCCGATTTTTTTGTTCAGC
ATCGACAATGCTAGTTCAGTGGAAATGCGTCAGTCTTTACGCGGGGCGAA
TATTGTAAGAATGGTAGATGTGTTGGTGTTTTATGCGAACGATCCACAAG
TGTAGTGATTGCTACGCACGCCCACCCCCCCACCCCCACGGTATCTCACG
CTTGTCTTAGTCTTAATGATCTCTCTCTTCCCCCCCCCCCTCTCTCCCCT
CTCTGTCTGTCTGGCTGTCTGGCTGGCTGTCTGGCTGTCTGTCGGTCTGG
CTGGTTCTCTCTCCGGGCGATCGCTCGATCGCATCGGGTGCGCCCCAGCA
ATCGCTTCGAGCAAACAGCAAGGCCTCCACCAGGTTCAAATCGAGAAACA
GGATGGGCAGCGGGGCACGGCTGTCTACGCTGAGACGGTCGTCTGGTAGC
GTTCAAGACAACAGCAACTTCGGTGGTGCTGCGGGGGGGGGGTCGTCTTG
GGGTGCCGGGCGGGGAAGCGACGCAGGAACCGGAGGTGGAGGTGGCAGTG
CCGCCGGCAGCGGCGTTAGCGGGGTGGATCCATCACCGGCTGCATCCCCT
TCCCCCCCGCCCGCTGCTGCGCCGGCCGCTGCACCGAGTGGTGACCGTGA
AGCACCGTTCTCAGGGGGGATGCTTGGCGTTGACGACGACAGCAGTAAGG
TTGGCGAGAGCGGCGACGGCAGCAAGGGTGCCGGTGAGGGCGGTGAGGGC
GGTGAGGGCGGTCGTGGTGAAGATGATGGTGCTGGTGGTGGCCGGAAGCG
GCCGGCGGCAGCGATGGAGCCTGGGTCGGAGGATGTGGGGGAGCCGCCCC
TGCAGTCGAGAAGGTATGCAGGGGATCGCGAGATCGCCGTAGGCGTAACC
TTTGACGCGGGGAAACTGTTGTCATGTACAACCTCTCAGTCCAGTCCTGC
CTCGGTTCCGACGGTGTAGACACGGTACGTACCACCCCAAAGTCGCTCTT
CCCATGTGCCGTATTCGTGCATACCCGTGGCTTGCAGTGCGACTCGTTGT
GCTGGGGAGTCCTACGCTTTTGCCCAACACTTTTCGGGGTTTACTGTAAA
TGAAACACACCTGGAAGTGAATGATCACATTTTTTTGCGAAATGTAGCTG
TCGGGAGTGCAATCACAGTTCGGGGTTTCGGAGCAAGGGTGCCCCGGGAG
ATAACACTATGCCATGCATGGGATGTCCTAGCATCAGTCACTCTTTCTTC
GGTCGTGAGAAAAAGAAATTCACGCCAACAGTCTTGACCGGTGTAGGATA
GAGATTCCTACCCTCCTAGAGCGTTGCACGAATGTTTGCACACACACACG
ACCGTTGTATAAAATCCCCTCCTGCTGATAGACGATGCCCAACAGCTGTA
CTGCATGAAGTGTGTAAAAGATACCCAAGTATTCAACCGTTGCAAGTTTC
CTTATGTCTGTTTTTTTTAGAAGAGAGGCAGGAAGTTGCTGCTCCGCGCT
CCGCCTAGGGTGATACTCGCATACACACGTGGTCGTAGATCCAACAGAAG
ATGAGCAATCCTCCCAACCCTCCGCGCGCCAACATCGGCAGGATTTCTCC
CGGAGAGAAGCCGTCGCAATCGCAACCAAAGGGCGATGGCGGCCAGGAGG
AAACCGCACCATCCTCCGGTGTTAGCCCATCGCAATCGACCACTCCCGAT
TGTCCTCCTCCAGCTCGGGAGGGTGAGAGTGAGGGGGACGATAACGGCAA
GGGCAAAGGTGGTAGCAGCCAGGACGTGTCACGCTCGTCTTCGCTATCGC
AAGCACCGGAGCAGCGGAAGGAGGTGGAGTCGGCAGAGATCGTTGCTGTC
GGGGCGAAGCAGAGCGTGGGGGCGGGCGGGGCCGCGGGCGATTCAGCGAC
CGTTGTCGGGGATGGTGACGGGGGTAGGTGCAGCGCAGGGGCCGACACGG
GGGCAAAGACGGCCGTGGTGCAGCAGTCATGGGGGGTGTGTGATAGATAG
GACATTGCCGTTCTTGTGGAATGATAGGAGTGTTAAAGCGAGGCTGGTCT
GTTGCCTTTTAAGAACGAGGCAAATGGGCTTTTTGCTACCCTAGCCTCCG
TTGTCGCTTCTTGGGGCGGCGGCGGTGGCTGCGATTAGCTTCCGGTGTTG
CTTGCTTGCAGGAGCGTATTGTCCTGTTTTTGTGCATACATTGGTGTCTC
GTTTGCATTATTTTATCCCATGCGTGTTGGTTGCAGGCTTGCGTGTGAGT
ACTTTTTTGGTGAATATACACAGGAGGAATACCAGTAGGCGGATCCGAAA
GCGTTTAAATATTTTTATTCTTCTGTTTGGTGAAATGTTTCTCTGCGTGC
ATCGTGTTTCTCTTTGAGAAGAGAGACCACGATAGGCGGTGGGCAGAAGG
GGTCCGTTTACGATGTTTTGAAACGCTTGTACTGCTTGGTTTGTTGGTTC
TTGGGGTCCTCTCTCATTCCGATGCGTTGTAGACAGTCGGAGGATGTAGT
CAGTCTGCACAGCAGTTGCACATATACGCGCGTTTAGTTTGTGCTTGTGT
CTGCCAACCGAGCGCCTGCTGTGTTGTACAGTCCGTTTTATTGTGTCGTT
CGAATAGGAAGGTGCGGAAACGGCATCCGCGGTGTTCTTTTTGGCGTATG
TGCGAACCCCTGTCGAATGGAAGGTTTTCAGGCTGTTTTGCTTGTCAGCG
AGGAGCCTGCCCGTTAGGGGGCGGCGTAGAAGTGCCCTCTCCCAGCGAGA
TTTTTGTTTGTTCTGTTTCACAATGTCTGGTACACATGCATGTTTTTGAT
GTTTCTCTTCGGTGTTTTTTTTTTTTTGTGGGGGTTGATTCGAGTGCCTA
GGTGAAGGTACAAGACAGCGAATCTAGTGCGTGTTTCCCTTGATGTTCAG
ACAAAGGATCAGCAGTAGAGCGAACAGTCAATAGCGTAGGACTTTGGCGA
GCGCTCTCTCTCTATGTCGGCTTTGTTTCTACATTTGTTTTACAACGACC
ATCCAGTGCTTGCAGTTCGTTTGGTTGAGGTCGCGATTGTTCGGTTTCTC
GGAGCCTTGGTTTGCGCCGGGAAACTTGTTCGAACGGTACCTTGCGTGCC
CCGCATGAGGCACGAAAGGTGTTGTTTCTTGCGAGACAAGGTGTGTATGG
TTGTATGCTGTCGTTCCGGATACATGCAATACATGGGTGGTCGTGTGGGA
CCCAGTCTGTGCCGGGACCCTGTCAGGATTTTGTTTCTGTAGCCTTTTCC
CTTCTGATGGTAACCGCGACGAGAGAGACGCTGTAACGCTTTGTAGAGTG
CTATGGTAATTAGCGATACTGTCTGCTGTCGCACGGCGGTGGTTTGCCGT
CTCTCTGCGGAGATATGTACTAGCTGTTGTACTGTTTTCTTGAATCGTCG
CAGTAATGTGCCGGTTTTTTTTTGCGCGTACGACGTTTATTTCTGTTTGG
AGGCTACTGGGCGCTGGAGTTCCTAGTAGCGAGATGAAAAATGCACCAAT
CACTCATGAAAAGCAAGAAGCGTTGTGATTGGCCGGTGTGTGGCATCAGC
TACGGAAAAGGAAGGGAGGAACTTGGTTTATTTTTATTATTTCCCCGTTT
TTGTTGTGCGATTTCGCGCACAAAATAGGTTGACAAAGTAATAGGGTTGA
CCGGCATTCGCCTGGCCGCGTTTGTTTAGCGTCCAGAACAAGCTCAGCTC
GAAATTCTCTTGGCTACAAGCGTCTCTTTTGTTCTTGGAAGTATGCTACC
GTATGCATTACATTAAAGAATGACTATAATATGATAAACCGGAGGGACTA
CGTTGAAGTCTACACTACCCTTGGAGTGAAACATATCGAGACAAAGTACT
AATGAACACGACACGCGCTTCCTTCCCCCCGATTTAATTTCTCTGTTCCC
TCTAGGGGATGAACCTCCTTTCACACA

Coding sequence (CDS) from alignment at chr_00:1815260..1822136+

>Ec-00_001600.1 ID=Ec-00_001600.1|Name=Ec-00_001600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1167bp|location=Sequence derived from alignment at chr_00:1815260..1822136+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAGAGCTGAGAAGGTCATCCAGAGTTCGCCAGTCAGCAAAGCACGC
CTCCACATACTACATTCCCGATGAGAAGAACAGTCTTTTCTCCACTCCGG
GGGTCCGACCGAGGGGGTGGCGGACGGCAGATGTTGCGGCAGGTTACTTT
ACGGTGAAGCGATGGATGCCCAGGGATCAGCAGCACCTGACGGCTGGGCT
ACACGGCGGCCTGACGGACCCAGCCGAGATTGCTGCCGCCAAGCAATCGC
TTCGAGCAAACAGCAAGGCCTCCACCAGGTTCAAATCGAGAAACAGGATG
GGCAGCGGGGCACGGCTGTCTACGCTGAGACGGTCGTCTGGTAGCGTTCA
AGACAACAGCAACTTCGGTGGTGCTGCGGGGGGGGGGTCGTCTTGGGGTG
CCGGGCGGGGAAGCGACGCAGGAACCGGAGGTGGAGGTGGCAGTGCCGCC
GGCAGCGGCGTTAGCGGGGTGGATCCATCACCGGCTGCATCCCCTTCCCC
CCCGCCCGCTGCTGCGCCGGCCGCTGCACCGAGTGGTGACCGTGAAGCAC
CGTTCTCAGGGGGGATGCTTGGCGTTGACGACGACAGCAGTAAGGTTGGC
GAGAGCGGCGACGGCAGCAAGGGTGCCGGTGAGGGCGGTGAGGGCGGTGA
GGGCGGTCGTGGTGAAGATGATGGTGCTGGTGGTGGCCGGAAGCGGCCGG
CGGCAGCGATGGAGCCTGGGTCGGAGGATGTGGGGGAGCCGCCCCTGCAG
TCGAGAAGGATTTCTCCCGGAGAGAAGCCGTCGCAATCGCAACCAAAGGG
CGATGGCGGCCAGGAGGAAACCGCACCATCCTCCGGTGTTAGCCCATCGC
AATCGACCACTCCCGATTGTCCTCCTCCAGCTCGGGAGGGTGAGAGTGAG
GGGGACGATAACGGCAAGGGCAAAGGTGGTAGCAGCCAGGACGTGTCACG
CTCGTCTTCGCTATCGCAAGCACCGGAGCAGCGGAAGGAGGTGGAGTCGG
CAGAGATCGTTGCTGTCGGGGCGAAGCAGAGCGTGGGGGCGGGCGGGGCC
GCGGGCGATTCAGCGACCGTTGTCGGGGATGGTGACGGGGGTAGGTGCAG
CGCAGGGGCCGACACGGGGGCAAAGACGGCCGTGGTGCAGCAGTCATGGG
GGGTGTGTGATAGATAG

Synonyms

The feature 'Ec-00_001600.1' has the following synonyms


Synonym
Esi0013_0122
Esi_0013_0122