Ec-00_001350.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001350.2
Unique NameEc-00_001350.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length122
Homology
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BLAST of Ec-00_001350.2 vs. uniprot
Match: D8LE90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE90_ECTSI)

HSP 1 Score: 541 bits (1393), Expect = 1.070e-187
Identity = 282/346 (81.50%), Postives = 291/346 (84.10%), Query Frame = 2 
Query:  113 FSSQPKDQVGQVEVPNGGEGQSIVKVWGRGGHAKDVRGLVMALNAAAGGGEDLNNVLRNNVGGFGPQSQSRRHKQDGRNSSDRIGNQDGDRAYSTVDRAALQHTVGPAQPGLYGRNSSWARPDGFVPACVAPIGDEHDPAVGSWHVSGAEKMDGVSSGPQDLWDGRSNAGYPRAGEATRHPSDGFGTSREHHPDVRASWQPGAEPAGGGGRSGSRWGAFASNRATEVLEGRRGPNQEALQDPDFVTCLETAPARRRASPTPGKRGRKRGPPSSSDSPTGHGASRLSIAGPWNTSSRRHRTTALRRTLAMHTEGVILSGSRIM*QCAATGPAHPQARQARIRTGTRW 1150
            F    + + G+ +    GEGQSIVKVWGRGGHAKDVRGLVMALNAAAGGGEDLNNVLRNNVGGFGPQSQSRRHKQDGRNSSDRIGNQDGDRAYSTVDRAALQHTVGPAQPGLYGRNSSWARPDGFVPACVAPIGDEHDPAVGSWHVSGAEKMDGVSSGPQDLWDGRSNAGYPRAGEATRHPSDGFGTSREHHPDVRASWQPGAEPAGGGGRSGSRWGAFASNRATEVLEGRRGPNQEALQDPDFVTCLETAPARRRASPTPGKRGRKRGPPSSSDSPTGHGASRL          R  RT   ++  A +      SG        A G   PQ +Q  +     W
Sbjct:   19 FQVNQRTKSGKWKCRMCGEGQSIVKVWGRGGHAKDVRGLVMALNAAAGGGEDLNNVLRNNVGGFGPQSQSRRHKQDGRNSSDRIGNQDGDRAYSTVDRAALQHTVGPAQPGLYGRNSSWARPDGFVPACVAPIGDEHDPAVGSWHVSGAEKMDGVSSGPQDLWDGRSNAGYPRAGEATRHPSDGFGTSREHHPDVRASWQPGAEPAGGGGRSGSRWGAFASNRATEVLEGRRGPNQEALQDPDFVTCLETAPARRRASPTPGKRGRKRGPPSSSDSPTGHGASRL----------RYRRTLEYQQQAASNYGATADSGD-------AHGGGDPQRQQNNVTMRRDW 347
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BLAST of Ec-00_001350.2 vs. uniprot
Match: A0A6H5KK09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK09_9PHAE)

HSP 1 Score: 432 bits (1111), Expect = 1.710e-145
Identity = 233/326 (71.47%), Postives = 251/326 (76.99%), Query Frame = 2 
Query:  173 QSIVKVWGRGGHAKDVRGLVMALNAAAGGGEDLNNVLRNNVGGFGPQSQSRRHKQDGRNSSDRIGNQDGDRAYSTVDRAALQHTVGPAQPGLYGRNSSWARPDGFVPACVAPIGDEHDPAVGSWHVSGAEKMDGVSSGPQDLWDGRSNAGYPRAGEATRHPSDGFGTSREHHPDVRASWQPGAEPAGGGGRSGSRWGAFASNRATEVLEGRRGPNQEALQDPDFVTCLETAPARRRASPTPGKRGRKRGPPSSSDSPTGHGASRLSIAGPWNTSSRRHRTTALRRTLAMHTEGVILSGSRIM*QCAATGPAHPQARQARIRTGTRW 1150
            QSIVKVWGRGGHAKDVRGLVMALNAAAGGGED NNV+ NNVGG  PQSQS+ H QDG+N S RIGN D DRAYS  DRA+LQHT+G AQPGLY RN SWARP+GFVPA VAPIGDEHDPAVGSWH  G EKMDGVSSG QDLWDG SNAGYPRA EAT HPSDGFGTSREHHP+VRA+WQP AEPAG GGR+GSRWGAFASNRATEVL+GR GPNQEALQDP+FVTCLETAPA+RRASPTPGKR RK GPPSSSDSP   GASR          SR  RT   ++  A +      +G        A G   PQ +Q  +     W
Sbjct:    4 QSIVKVWGRGGHAKDVRGLVMALNAAAGGGEDPNNVVCNNVGGSEPQSQSQPHTQDGQNPSGRIGNHDDDRAYSVGDRASLQHTLGQAQPGLYVRNGSWARPEGFVPASVAPIGDEHDPAVGSWHSWGTEKMDGVSSGTQDLWDGDSNAGYPRAREATSHPSDGFGTSREHHPNVRATWQPVAEPAGAGGRNGSRWGAFASNRATEVLDGRLGPNQEALQDPNFVTCLETAPAKRRASPTPGKRRRKCGPPSSSDSPLEDGASR----------SRYRRTLEYQQQAASNNGAAADAGD-------ARGRGGPQWQQDGVTMRRAW 312
The following BLAST results are available for this feature:
BLAST of Ec-00_001350.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE90_ECTSI1.070e-18781.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KK09_9PHAE1.710e-14571.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1588531..1591379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1479
Hectar predicted targeting categoryother localisation
Gene idEc-00_001350.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001350Ec-00_001350Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1588526..1591379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001350.2Ec-00_001350.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1590054..1590871 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001350.2.1Ec-00_001350.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1588531..1588642 +
Ec-00_001350.2.2Ec-00_001350.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1589017..1589067 +
Ec-00_001350.2.3Ec-00_001350.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1589612..1590274 +
Ec-00_001350.2.4Ec-00_001350.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1590727..1591379 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0013505UTR:Ec-00_001350.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1588531..1588642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001350.2CDS:Ec-00_001350.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1590054..1590274 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0013503UTR:Ec-00_001350.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1590872..1591379 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001350.2 ID=Ec-00_001350.2|Name=Ec-00_001350.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=122bp
MGVRMQGTPGQGRRRGTRATVSGQVASTTPMCVRRGSRALNQREVGGEVV
ADGERLRPTAQRRSWRGAEGPTRRRYKTRISSRASKQLRPGGAPARRLGR
EGGNAAHRAAQTRQRGTGRQG*
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spliced messenger RNA

>Ec-00_001350.2 ID=Ec-00_001350.2|Name=Ec-00_001350.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1479bp|location=Sequence derived from alignment at chr_00:1588531..1591379+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ACTCTGCTATGCACAACACGAGCGCAGGAGCCGCCGACGAATAGAGCCAT
CCTACCTGAAGATGGAGGGAGGAGGAATAGTATTCCTGGCCCTGCGGTGC
TTCTCTTGTCAGTGTTTTCAAGTCAACCAAAGGACCAAGTCGGGCAAGTG
GAAGTGCCGAATGTGCGGTGAGGGTCAGAGCATCGTCAAGGTGTGGGGTA
GAGGGGGTCACGCGAAGGATGTCCGCGGTCTGGTTATGGCGCTCAACGCC
GCCGCCGGGGGAGGGGAAGACCTCAACAACGTCTTGCGCAACAACGTTGG
AGGATTCGGGCCGCAATCACAATCACGGCGGCACAAGCAGGACGGCCGAA
ACTCCAGCGACAGAATCGGGAACCAGGACGGCGACCGTGCGTATTCGACG
GTTGACCGTGCCGCCCTCCAGCACACCGTGGGACCGGCACAACCTGGGTT
GTACGGGCGAAATAGCAGCTGGGCTCGACCTGACGGGTTTGTTCCCGCAT
GTGTGGCGCCCATCGGTGACGAGCATGACCCCGCAGTCGGCTCGTGGCAT
GTCTCGGGGGCCGAGAAGATGGATGGCGTGAGCTCGGGGCCGCAGGACTT
GTGGGATGGGCGTTCGAATGCAGGGTACCCCCGGGCAGGGGAGGCGACGA
GGCACCCGAGCGACGGTTTCGGGACAAGTCGCGAGCACCACCCCGATGTG
CGTGCGTCGTGGCAGCCGGGCGCTGAACCAGCGGGAGGTGGGGGGAGAAG
TGGTAGCCGATGGGGAGCGTTTGCGTCCAACCGCGCAACGGAGGTCTTGG
AGGGGCGCCGAGGGCCCAACCAGGAGGCGTTACAAGACCCGGATTTCGTC
ACGTGCCTCGAAACAGCTCCGGCCAGGCGGCGCGCCAGCCCGACGCCTGG
GAAGAGAGGGAGGAAACGCGGCCCACCGAGCAGCTCAGACTCGCCAACGG
GGCACGGGGCGTCAAGGTTGAGGTATCGCAGGACCCTGGAATACCAGCAG
CAGGCGGCATCGAACTACGGCGCTACGGCGGACTCTGGCGATGCACACGG
AGGGGGTGATCCTCAGCGGCAGCAGAATAATGTGACAATGCGCCGCGACT
GGCCCTGCTCATCCTCAAGCGCGCCAGGCGCGAATCAGGACGGGGACGCG
ATGGCGTACATGCGGGACGGTGGATGGGAAGACGGGAGGCGGGATCCGTG
CGGGACGAGCCGTGTTCGTGTTGGTGTCGTTGAGCAAGAGTGGTCTCGCC
CCGCCCACAGCACTAGTGGTCACGGTGGCATGTCGAGGGACGGGAGTATG
TTCCCGTCAGAGTGGAACGGTAGGGGCAGAAGAAGTAGCACTGCTTCGGC
ACCGCCGAACAGCAGTGCACCCGGTGGCACCGGTGTCGTGGGAGCAACAA
GCGGTCCCTCTTCATCGTCAAGGTGGAGCAAGTTTGTGCGATGAGAAACA
GATAGATCATCACGTTTGGGACTTGACTT
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protein sequence of Ec-00_001350.2

>Ec-00_001350.2 ID=Ec-00_001350.2|Name=Ec-00_001350.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=122bp
MGVRMQGTPGQGRRRGTRATVSGQVASTTPMCVRRGSRALNQREVGGEVV
ADGERLRPTAQRRSWRGAEGPTRRRYKTRISSRASKQLRPGGAPARRLGR
EGGNAAHRAAQTRQRGTGRQG*
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mRNA from alignment at chr_00:1588531..1591379+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001350.2 ID=Ec-00_001350.2|Name=Ec-00_001350.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2849bp|location=Sequence derived from alignment at chr_00:1588531..1591379+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ACTCTGCTATGCACAACACGAGCGCAGGAGCCGCCGACGAATAGAGCCAT
CCTACCTGAAGATGGAGGGAGGAGGAATAGTATTCCTGGCCCTGCGGTGC
TTCTCTTGTCAGGTGTGTCCCTGGACCGCTTTCTTTGGCATGGTGATGGG
GCTTGACGTAAGGTTTACCCTCTCTCTTCGCCCAGCTTTCTCTTACGATC
CCTTATCTCTATCGTACGGATGTAGGGCAATAGGCTGGCCGATTGTCGTT
CAAGTCGTCCTTCCTATGCATATGATATAGATATGAGCTGGCAAAGTTGC
GTTCTACGTAGAACAGGACGAACAGGGCACGAAGCGAGACATTTTTTTTT
GCCAGTCAACCGACAGGATTTTCCACACGGCAGCCGGTTGACACTTTTCA
AAATTCAAACTGGCTACACTTCTACACTATATACACACTTGCAAATACCT
CGATCTCTTCCTTCTCCACCTTCCTTCGCTCCGCAGTGTTTTCAAGTCAA
CCAAAGGACCAAGTCGGGCAAGTGGAAGTGCCGAATGGTGAGTTGTTTTG
GTCAAGACAAAAGAGGGTTGGTGTTCGTGCATGCACCGCACCTCGTTTCG
CTTGATTGTTGTGTTTGATATCCCAGGGATGAGAGCGAAGTGCACGGACA
CGAGGTCTACCGCGCTGGGTTAGGTATTCTCGGTTATGATGTTCTGCAAC
ACATCTTACCTGCCTTGGCGTTGTCGACGCTCCATTTCTCGACGCTCGCT
CGATCCCGTTCGGGGCCACCACACGTTCCTGCTTTTGTAGGTGACCCCTT
CCATCCGTATTGAACGAACAGCCCCGAGCACACACAACGCCCCCACCCCC
ACCCCGGACGTGGCCTAAATTGTTTTCCGTGGCTCATGATTGGTGTCTGG
AGTTCAACGCTGATTGCTTGGTTTGTTTTTGACCGGCAAGTGCACAATGA
GGGCACCATTCAGTATATGTTTTGTGTTCCAGCCGAACCTCATTGTCTCT
CGCTCCCCCTTTGCATCCTCTGCGCTATCAATCGCTCCCCCTTTGCATTC
TCTGCGCTATCAATCTGACGTGCCCATCAAGTGCGGTGAGGGTCAGAGCA
TCGTCAAGGTGTGGGGTAGAGGGGGTCACGCGAAGGATGTCCGCGGTCTG
GTTATGGCGCTCAACGCCGCCGCCGGGGGAGGGGAAGACCTCAACAACGT
CTTGCGCAACAACGTTGGAGGATTCGGGCCGCAATCACAATCACGGCGGC
ACAAGCAGGACGGCCGAAACTCCAGCGACAGAATCGGGAACCAGGACGGC
GACCGTGCGTATTCGACGGTTGACCGTGCCGCCCTCCAGCACACCGTGGG
ACCGGCACAACCTGGGTTGTACGGGCGAAATAGCAGCTGGGCTCGACCTG
ACGGGTTTGTTCCCGCATGTGTGGCGCCCATCGGTGACGAGCATGACCCC
GCAGTCGGCTCGTGGCATGTCTCGGGGGCCGAGAAGATGGATGGCGTGAG
CTCGGGGCCGCAGGACTTGTGGGATGGGCGTTCGAATGCAGGGTACCCCC
GGGCAGGGGAGGCGACGAGGCACCCGAGCGACGGTTTCGGGACAAGTCGC
GAGCACCACCCCGATGTGCGTGCGTCGTGGCAGCCGGGCGCTGAACCAGC
GGGAGGTGGGGGGAGAAGTGGTAGCCGATGGGGAGCGTTTGCGTCCAACC
GCGCAACGGAGGTCTTGGAGGGGCGCCGAGGGCCCAACCAGGAGGTACAC
TAGGCACTACAGTAGTCCTTTGTCATACTGCTCTGGTTTTTGTTCCAACT
GCCTGTGCCTACGTAGTTTTACCTCGGCGGGGAAAATTCGGGTGCAGTCC
GTGTACACAAGCAAACATATGCATACGGACGGGGGTTACATGGATGGCAC
CCTTCTTTTGGCGACAGGTGTCCAAAGAAGGGTTCCTTTCACAACAAACA
ATTTTTTCGCGGACAAGTGTTCGTAACCGGAATCGTTTTTTTCCTTGGGA
CGATGTAATTTCACGCCTCCTTTGCGCGTGCCATTCCCGTTTCTATCATC
TAGAAGACCAAAGCTCGTAGGGTTACAATACCCCCGTGCCATGGCTTGAC
ACCACCTGCTCTAAAGCTTACTCGAGATCGGGTCTGCTTCACATCCATCC
CCACGCTCTTGCCCGCTGTGCTCTGTGTCTTGTACGTACGTGGAAGGCGT
TACAAGACCCGGATTTCGTCACGTGCCTCGAAACAGCTCCGGCCAGGCGG
CGCGCCAGCCCGACGCCTGGGAAGAGAGGGAGGAAACGCGGCCCACCGAG
CAGCTCAGACTCGCCAACGGGGCACGGGGCGTCAAGGTTGAGGTATCGCA
GGACCCTGGAATACCAGCAGCAGGCGGCATCGAACTACGGCGCTACGGCG
GACTCTGGCGATGCACACGGAGGGGGTGATCCTCAGCGGCAGCAGAATAA
TGTGACAATGCGCCGCGACTGGCCCTGCTCATCCTCAAGCGCGCCAGGCG
CGAATCAGGACGGGGACGCGATGGCGTACATGCGGGACGGTGGATGGGAA
GACGGGAGGCGGGATCCGTGCGGGACGAGCCGTGTTCGTGTTGGTGTCGT
TGAGCAAGAGTGGTCTCGCCCCGCCCACAGCACTAGTGGTCACGGTGGCA
TGTCGAGGGACGGGAGTATGTTCCCGTCAGAGTGGAACGGTAGGGGCAGA
AGAAGTAGCACTGCTTCGGCACCGCCGAACAGCAGTGCACCCGGTGGCAC
CGGTGTCGTGGGAGCAACAAGCGGTCCCTCTTCATCGTCAAGGTGGAGCA
AGTTTGTGCGATGAGAAACAGATAGATCATCACGTTTGGGACTTGACTT
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Coding sequence (CDS) from alignment at chr_00:1588531..1591379+

>Ec-00_001350.2 ID=Ec-00_001350.2|Name=Ec-00_001350.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=366bp|location=Sequence derived from alignment at chr_00:1588531..1591379+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCGTTCGAATGCAGGGTACCCCCGGGCAGGGGAGGCGACGAGGCAC
CCGAGCGACGGTTTCGGGACAAGTCGCGAGCACCACCCCGATGTGCGTGC
GTCGTGGCAGCCGGGCGCTGAACCAGCGGGAGGTGGGGGGAGAAGTGGTA
GCCGATGGGGAGCGTTTGCGTCCAACCGCGCAACGGAGGTCTTGGAGGGG
CGCCGAGGGCCCAACCAGGAGGCGTTACAAGACCCGGATTTCGTCACGTG
CCTCGAAACAGCTCCGGCCAGGCGGCGCGCCAGCCCGACGCCTGGGAAGA
GAGGGAGGAAACGCGGCCCACCGAGCAGCTCAGACTCGCCAACGGGGCAC
GGGGCGTCAAGGTTGA
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Synonyms
The feature 'Ec-00_001350.2' has the following synonyms
Synonym
Esi0013_0084
Esi_0013_0084