Ec-00_001250.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001250.2
Unique NameEc-00_001250.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length139
Homology
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BLAST of Ec-00_001250.2 vs. uniprot
Match: D8LE84_ECTSI (CLP1_P domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE84_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 4.490e-102
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = -3 
Query:    1 EPRKGKVHRVAGGVSAAADDAPGALVVGLHSLEKLCFVGAALVRCGRGQADLSGFTLLPEAWGPYVEAHSPRWMGLLVLRALDAEDRPDVAIARGSIATDDAGAANDDKMENEIEEAIDRIAEHFPVVVVFKSLSGRSPLKFLSAQADADALYAPSIGADDSSDPVAESQPPQSNRRRGLQTAEGG 558
            E  +GKVHRVAGGVSAAADDAPGALVVGLHSLEKLCFVGAALVRCGRGQADLSGFTLLPEAWGPYVEAHSPRWMGLLVLRALDAEDRPDVAIARGSIATDDAGAANDDKMENEIEEAIDRIAEHFPVVVVFKSLSGRSPLKFLSAQADADALYAPSIGADDSSDPVAESQPPQSNRRRGLQTAEGG
Sbjct:   91 EEDEGKVHRVAGGVSAAADDAPGALVVGLHSLEKLCFVGAALVRCGRGQADLSGFTLLPEAWGPYVEAHSPRWMGLLVLRALDAEDRPDVAIARGSIATDDAGAANDDKMENEIEEAIDRIAEHFPVVVVFKSLSGRSPLKFLSAQADADALYAPSIGADDSSDPVAESQPPQSNRRRGLQTAEGG 276
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BLAST of Ec-00_001250.2 vs. uniprot
Match: A0A6H5KYH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.400e-31
Identity = 82/136 (60.29%), Postives = 95/136 (69.85%), Query Frame = 3 
Query: 2268 AQRSEQR-KSLEALKRRDNDPNVMSAVARHLWADRKYAKTRRWFNRAITSGPLHGRRVGGALRLRAAAGDRR*ANGRSRQCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTST 2672
            AQR+EQ+ KSLEALKR DNDP+V++AVAR  WADRKYAK R+WFNRAIT  P  G             G          +CVAA+P+HGELW S+SKT  TE +R DKASIL+KVVAAYFS +G VVVIP GPT T
Sbjct:  333 AQRAEQKSKSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQKDVLDRCVAAEPAHGELWTSVSKT--TENRRLDKASILKKVVAAYFS-DGAVVVIPGGPTGT 465
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BLAST of Ec-00_001250.2 vs. uniprot
Match: A0A7S2USD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.190e-30
Identity = 81/168 (48.21%), Postives = 108/168 (64.29%), Query Frame = 3 
Query: 2118 LRNPQSEGMRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQR-KSLEALKRRDNDPNVMSAVARHLWADRKYAKTRRWFNRAITSGPLHGRRVGGALRLRAAAGDRR*ANGRSRQCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAA 2618
            L+NP++  +  EA+RLERR GNSK  ++L  KALQ+CP SG++WAEE   A R +QR +S+EALKR DNDPNV+ AVA     +RK AK+R+WFNRA+   P  G             G +       ++CVAA+P+HGELW   SK   TE +R +  +IL+KVVAA
Sbjct:  155 LKNPKNPVLLREAIRLERRHGNSKLAENLTAKALQDCPSSGIIWAEEISCAPRHQQRARSVEALKRCDNDPNVILAVAVLFQNERKVAKSRKWFNRAVALDPDLGDAWALFYAFELQHGKKEDQEELLKRCVAAEPTHGELWCGTSKK--TENRRCNTETILKKVVAA 320
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BLAST of Ec-00_001250.2 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 4.920e-29
Identity = 78/131 (59.54%), Postives = 91/131 (69.47%), Query Frame = 3 
Query: 2280 EQRKSLEALKRRDNDPNVMSAVARHLWADRKYAKTRRWFNRAITSGPLHGRRVGGALRLRAAAGDRR*ANGRSRQCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTST 2672
            ++ KSLEALKR DNDP+V++AVAR  WADRKYAK R+WFNRAIT  P  G             G          +CVAA+P+HGELW S+SKT  TE +R DKASIL+KVVAAYFS +G VVVIP GPTST
Sbjct:  699 QKSKSLEALKRCDNDPHVITAVARRFWADRKYAKARKWFNRAITLDPNMGDAWAAYYAFELQQGTEVEQKDVLDRCVAAEPAHGELWTSVSKT--TENRRLDKASILKKVVAAYFS-DGAVVVIPGGPTST 826
[Close]
BLAST of Ec-00_001250.2 vs. uniprot
Match: D8LE81_ECTSI (Pre-mRNA splicing factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE81_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 4.090e-28
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 3 
Query: 2502 QCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTSTG 2675
            +CVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTSTG
Sbjct:   44 RCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGPTSTG 101
[Close]
BLAST of Ec-00_001250.2 vs. uniprot
Match: A0A453J3T8_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J3T8_AEGTS)

HSP 1 Score: 113 bits (283), Expect = 8.870e-25
Identity = 70/167 (41.92%), Postives = 99/167 (59.28%), Query Frame = 3 
Query: 2121 RNPQSEGMRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQR-KSLEALKRRDNDPNVMSAVARHLWADRKYAKTRRWFNRAITSGPLHGRRVGGALRLRAAAGDRR*ANGRSRQCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAA 2618
            +NP +  + L A+R E R GN+K  DSL+ KALQECP SG+LWA       R++++ KS +A+KR D+DP+V++AVA+  W DRK  K R WFNRA +  P  G       +     G+        ++C+AA+P HGE W++ SK      Q  D  +ILR+VV A
Sbjct:   32 KNPATPELWLAAIRAELRHGNNKEADSLLAKALQECPTSGILWAAAIEMVPRAQRKSKSSDAIKRCDHDPHVIAAVAKLFWHDRKVDKARSWFNRAASLAPDIGDFRALYYKSELQHGNADTQRDVLKRCIAAEPKHGERWQATSKAVENSHQPTD--AILRRVVLA 196
[Close]
BLAST of Ec-00_001250.2 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.950e-24
Identity = 71/140 (50.71%), Postives = 90/140 (64.29%), Query Frame = 3 
Query: 2211 KALQECPGSGVLWAEEALAAQRSEQR-KSLEALKRRDNDPNVMSAVARHLWADRKYAKTRRWFNRAITSGPLHGRRVGGALRLRAAAGDRR*ANGRSRQCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFS 2627
            KALQ+CP SG+LWAEE L A R++Q+ KS+EALKR DNDP+V++AVAR    DRKY K R+WFNRA+     +G             G          +CV A+PSHGELW S+SK   T  QR D+ ++LRKVVA YF+
Sbjct:  675 KALQDCPTSGLLWAEEILCAPRAQQKGKSVEALKRCDNDPHVITAVARLFEKDRKYPKARKWFNRAVALDADNGDAWAAFFAFELQQGTAEQQADVIARCVKAEPSHGELWCSVSKK--TGNQRLDRETVLRKVVAQYFA 812
[Close]
BLAST of Ec-00_001250.2 vs. uniprot
Match: A0A1V9ZC51_9STRA (Pre-mRNA-processing factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC51_9STRA)

HSP 1 Score: 120 bits (301), Expect = 7.970e-24
Identity = 73/168 (43.45%), Postives = 101/168 (60.12%), Query Frame = 3 
Query: 2118 LRNPQSEGMRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQRK-SLEALKRRDNDPNVMSAVARHLWADRKYAKTRRWFNRAITSGPLHGRRVGGALRLRAAAGDRR*ANGRSRQCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAA 2618
            LRNP+++ + LEAVRLERR GN KG ++L+ KALQECP SG+L AE    A R+++++ SLEALK++DNDP V  +V+R  W +RK  K R+WF R +   P  G             G+    N    +CV A+P HG LW +ISK     K+      +L+ VVA+
Sbjct:  932 LRNPKNDLLWLEAVRLERRHGNIKGQENLLAKALQECPDSGMLLAESIELAPRTQKKRVSLEALKKKDNDPAVCLSVSRLFWHERKVTKARKWFERTVQLNPDFGDGWAYYYAFELKDGNESQRNDVLNRCVNAEPRHGSLWCAISKQTANRKK--STKDLLKLVVAS 1097
[Close]
BLAST of Ec-00_001250.2 vs. uniprot
Match: A0A2P6NJY6_9EUKA (PRP1_N domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NJY6_9EUKA)

HSP 1 Score: 117 bits (294), Expect = 4.780e-23
Identity = 69/148 (46.62%), Postives = 91/148 (61.49%), Query Frame = 3 
Query: 2118 LRNPQSEGMRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQR--KSLEALKRRDNDPNVMSAVARHLWADRKYAKTRRWFNRAITSGPLHGRRVGGALRLRAAAGDRR*ANGRSRQCVAADPSHGELWKSISK 2555
            L+NP++  + L A+R+E    N K     ++KALQECP SG+LWAE A+  ++ +QR  KS++ALKR DNDP V+ AVA+  WADRKY KTR WFNRA+T  P  G       +     G         ++CVAADP HGE W  +SK
Sbjct:  804 LKNPKNADLWLAAIRVEVADNNPKASQMTLSKALQECPTSGILWAE-AIDLEKPKQRRAKSVDALKRCDNDPFVIVAVAKVFWADRKYEKTRTWFNRAVTLNPDLGDAWAYFYKFEIQHGTEEHQQELLKRCVAADPRHGENWVRVSK 950
[Close]
BLAST of Ec-00_001250.2 vs. uniprot
Match: A0A7S2PNX6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PNX6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.870e-22
Identity = 63/158 (39.87%), Postives = 93/158 (58.86%), Query Frame = 3 
Query: 2118 LRNPQSEGMRLEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQR-KSLEALKRRDNDPNVMSAVARHLWADRKYAKTRRWFNRAITSGPLHGRRVGGALRLRAAAGDRR*ANGRSRQCVAADPSHGELWKSISKTNTTEKQRFDK 2588
            ++NP++  + ++A+RLERRS N K   +LM KA+QECP SG+L AE  ++A R+EQ+ K  EA+KR  +DP V++AVA     +RKY K R+W  R++   P  G           A G     +G   +C+ ADP HG +W SISK     K+  ++
Sbjct:    5 VKNPKNPELWVQAIRLERRSKNEKLAVTLMAKAIQECPNSGLLRAEAIISAPRTEQKSKCAEAIKRCPDDPVVITAVATLFATERKYEKARKWLERSVALNPDIGDSWARFYAFELAYGTVEQQDGVKNRCIQADPKHGSVWCSISKDMDNRKKSVEE 162
The following BLAST results are available for this feature:
BLAST of Ec-00_001250.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE84_ECTSI4.490e-10298.39CLP1_P domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KYH2_9PHAE3.400e-3160.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2USD3_9STRA1.190e-3048.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FHD2_ECTSI4.920e-2959.54PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LE81_ECTSI4.090e-2898.28Pre-mRNA splicing factor, putative n=1 Tax=Ectocar... [more]
A0A453J3T8_AEGTS8.870e-2541.92Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A835YM25_9STRA1.950e-2450.71PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A1V9ZC51_9STRA7.970e-2443.45Pre-mRNA-processing factor n=1 Tax=Thraustotheca c... [more]
A0A2P6NJY6_9EUKA4.780e-2346.62PRP1_N domain-containing protein n=1 Tax=Planoprot... [more]
A0A7S2PNX6_9STRA1.870e-2239.87Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1533522..1539328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length3375
Hectar predicted targeting categoryother localisation
Gene idEc-00_001250.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001250Ec-00_001250Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1533522..1539328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001250.2Ec-00_001250.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1537812..1538228 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001250.2.6Ec-00_001250.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1533522..1534387 -
Ec-00_001250.2.5Ec-00_001250.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1534952..1535169 -
Ec-00_001250.2.4Ec-00_001250.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1535679..1535849 -
Ec-00_001250.2.3Ec-00_001250.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1536513..1536894 -
Ec-00_001250.2.2Ec-00_001250.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1537322..1537379 -
Ec-00_001250.2.1Ec-00_001250.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1537649..1539328 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0012503UTR:Ec-00_001250.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1533522..1534387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001250.2CDS:Ec-00_001250.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1537812..1538228 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0012505UTR:Ec-00_001250.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1538229..1539328 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001250.2 ID=Ec-00_001250.2|Name=Ec-00_001250.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=139bp
MSARWWWWDSCWLGWLTPPPPPPLPLPPFLGLLRVWCNFVLMLVSVVHSL
LRQLEETFLPVYACDPLLPWAVAAVAEEREKGESSLIARCGGAARVVLAA
PMRRNKAHRTPPQKVQSRGPHSGVERSAWHQATQALRD*
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spliced messenger RNA

>Ec-00_001250.2 ID=Ec-00_001250.2|Name=Ec-00_001250.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3375bp|location=Sequence derived from alignment at chr_00:1533522..1539328- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCCCCCCTCCGCCGTTTGCAAACCCCGGCGACGGTTACTTTGAGGTGGTT
GACTTTCGGCGACAGGGTCAGAGCTGTCGTCGGCGCCAATACTCGGCGCA
TAAAGAGCGTCGGCGTCGGCCTGCGCCGACAAAAACTTCAACGGGCTGCG
ACCGGACAGCGACTTGAACACCACCACCACGGGGAAATGTTCGGCGATCC
TATCGATCGCCTCCTCGATCTCGTTCTCCATCTTGTCGTCGTTAGCAGCA
CCCGCGTCATCTGTAGCAATGCTGCCACGGGCTATTGCTACGTCCGGGCG
ATCTTCCGCGTCCAATGCACGCAGCACCAGCAAGCCCATCCAGCGCGGCG
AGTGCGCCTCGACGTACGGCCCCCACGCTTCAGGTAGCAGGGTGAATCCC
GACAGGTCGGCCTGGCCACGGCCGCACCGCACAAGCGCTGCGCCGACGAA
GCACAGCTTCTCGAGGGAGTGCAGGCCCACTACTAACGCGCCAGGTGCGT
CGTCGGCAGCTGCAGACACTCCGCCGGCCACGCGGTGTACCTTACCCTTG
CGGGGTTCGAACAAGGTGCAAGGCAGCGGCGGGTTCGCGCGTGGCCCGTA
GTATCCGTCCGCACACACAGCAGCACCATCGTCTTCGTCCCAGTCGGTTT
GCGCTTCTCCATTGACCGCACACACCTGACCCCGCCTTCCGGCTTGCCCC
CTGCCCCCCGCTGTTGTTTTTCTGTCGGCACGCCGTCCTGACTTCCCGCC
TCGCTGCCCGCCGCCGCTAGCCAACTTTCGTCGTCGATCGGGATGCTGTT
TCCACCGGTTGTTGGGGTCTGATGTCGTCGCCGGTGACGGACTCGACCCG
GTCCCGTCCGCTTCATCACTGCTGCTACTGCTTTTTCTACTTTCCTCTTG
GTCCTCCTCTTCTTCTCCCTCCTCTTCCTCCTCTTCCTCGTCTTGCTGCT
CGTCGTAGTGACTGGACTGCTGCTGCTGTGGCAAGGCCCACGGTATCCCA
GGCATCCCTGGACTAACCTCGTCCTCTTCTTCCGTTATTCCATCGGTGAC
GCCGTCGCCTTTGCCGGCCGCAGGCTTAAGAGCAGGCGCGTCTTGCTCCG
ATGTCGGCGAGGTGGTGGTGGTGGGATTCCTGCTGGTTGGGTTGGCTGAC
GCCGCCGCCGCCGCCGCCGCTGCCGCTGCCGCCTTTTCTTGGGCTGCTGA
GGGTGTGGTGCAACTTCGTGCTGATGTTGGTGTCGGTGGTCCACTCCCTT
CTTCGCCAGCTGGAGGAGACGTTCTTGCCCGTTTACGCTTGCGACCCATT
GCTTCCGTGGGCAGTAGCAGCAGTGGCAGAGGAGAGAGAGAAGGGCGAGA
GCAGCCTGATCGCGAGGTGTGGAGGTGCAGCAAGGGTGGTGTTGGCAGCG
CCGATGCGGCGCAATAAAGCACATCGAACCCCCCCACAAAAAGTGCAGTC
GCGTGGCCCCCACAGTGGAGTTGAGCGGAGCGCTTGGCATCAGGCGACAC
AAGCATTGAGAGATTGAGAGCATCACGGCATGACCAGCCAGACGAGGGAG
ATACACACCGACAACCTGCAGCGACTACGATACGCACATACCCCGACCTG
GAGCACGCAGAAAACATGGCGATGCGAGGCTTGGGAAAGAAAACTCCTGC
ACAACCTACAGCAGTGACGGTGATGAGATGGAAGGGCCCGTCACAGGCCT
CCTCGTCTGGGACTGCTGTACGTACCAACACTGCTGCGGTGCCCCTTCGA
ACCACGTCGCTGGTCTCGGACGCGGTGCCGTGGGTTTCACCAAGTGGTCC
GACATCGGTCCCGCCCGCACCACTCTCGCCGAGCTCGGGGCCGCCGCCCG
CCTGGCGCGACCTGTGCGTCGTGCGGCGTTTCTAAAGACCCAGACTTCGG
ACCCGTGCCAGTGGGTACGTGGCCGGCCGTGGGCATGTGATGGGCGACCT
CGCCAAGTCTAACAGCGAGGATGGGGCGGGGCGGGGCGGCCGGGGGGGCG
GGGCAGCGTCGAGGGCGGCGGTAGACTTGTCGGAGAGTAACTATGATGAG
TTCTCGGGGTATTCGGACAGGCTGTTCCGGGAAACCCCGTGACGACGAAG
AGGCGGACGCGATCTACGAGTTTAAGGAATCCGCAGAGCGAGGGTATGCG
GTTGGAGGCGGTGCGTCTTGAGAGGCGATCAGGGAACAGCAAGGGTGTGG
ATAGCCTCATGACCAAGGCCCTGCAGGAGTGTCCCGGGTCCGGCGTGCTT
TGGGCGGAGGAGGCCCTGGCGGCACAACGGTCCGAGCAGAAGAAAATCCC
TTGAGGCGCTCAAGAGGCGCGACAACGACCCGAACGTCATGAGCGCCGTG
GCCAGGCACTTGTGGGCGGACCGAAAATATGCCAAGACCCGCAGGTGGTT
CAACCGCGCCATCACGTCTGGACCCTTACATGGGCGACGCGTGGGCGGTG
CACTACGCCTTCGAGCTGCAGCAGGGGACCGACGTTGAGCGAACGGACGT
TCTCGGCAGGTGTGTGGCGGCCGATCCTTCCCACGGGGAGCTGTGGAAGT
CAATATCCAAGACAAACACCACCGAAAAACAGCGGTTCGACAAGGCCAGC
ATCCTCAGGAAGGTCGTAGCCGCCTACTTTTCCGGCAACGGTGTAGTGGT
CGTCATTCCACGAGGCCCAACAAGCACTGGCTAGATCAAAGCGAAACGAT
GATTGATGTGGATTGACACGAGAGGAGAGCAAGGCAAAAACGTTGCCTTT
CGTGCTATCGGGAAACCCTCGAGAGAACGACACACGGTTTTGATCGAAGG
TCTCCTGATCGTGTAGAGACAGACCGGCCGCCTTCTTCGGCAAAACTGCG
TATGCTGCCGTGTAGACACGGGTGTTTGTGAAGGTCGTCGAAAGAGCACT
CAACCAATCAATCTTCCCGGGAAGGGGTGAGACGTCCAAGCCGCTTCTTC
TCTGTTTTTCACTCTTTTCGCGTTAAAAATAGAAGGCAAGCACGGCACCC
CGGTAGACTATTTAGTTGGTATCCTCGGAAATCTTCTAGTGGCCAGGGTG
GTTCGAATTCGGCGTAAGCGAGCTTGCAGTGTGAGTTTTCTCTCGCTTCC
GTTCCTGGCCTGGGTGGACAGCACTCTTCTCGCATTGAAAATCGAAGGCG
AAGTACCGCAGGAGGGATGTGTAGGTGCCTCAGTGAGAGGAACCCTTCTG
CGTGACCACGAGTTGTGGAGTAAACGGCGCACGTGCTGTGAGCGCTGATT
TGAAGTGAACACACACACAAAAAAGGCACCGCAGGAGAGGTGGATAGGGG
AGTGACCACGGATGCCTCTACCCAAGGGTATGCACGAAAAAAAAATCAAG
ACACGTATGCCTACTAATCGAAAAT
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protein sequence of Ec-00_001250.2

>Ec-00_001250.2 ID=Ec-00_001250.2|Name=Ec-00_001250.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=139bp
MSARWWWWDSCWLGWLTPPPPPPLPLPPFLGLLRVWCNFVLMLVSVVHSL
LRQLEETFLPVYACDPLLPWAVAAVAEEREKGESSLIARCGGAARVVLAA
PMRRNKAHRTPPQKVQSRGPHSGVERSAWHQATQALRD*
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mRNA from alignment at chr_00:1533522..1539328-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001250.2 ID=Ec-00_001250.2|Name=Ec-00_001250.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5807bp|location=Sequence derived from alignment at chr_00:1533522..1539328- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCCCCCCTCCGCCGTTTGCAAACCCCGGCGACGGTTACTTTGAGGTGGTT
GACTTTCGGCGACAGGGTCAGAGCTGTCGTCGGCGCCAATACTCGGCGCA
TAAAGAGCGTCGGCGTCGGCCTGCGCCGACAAAAACTTCAACGGGCTGCG
ACCGGACAGCGACTTGAACACCACCACCACGGGGAAATGTTCGGCGATCC
TATCGATCGCCTCCTCGATCTCGTTCTCCATCTTGTCGTCGTTAGCAGCA
CCCGCGTCATCTGTAGCAATGCTGCCACGGGCTATTGCTACGTCCGGGCG
ATCTTCCGCGTCCAATGCACGCAGCACCAGCAAGCCCATCCAGCGCGGCG
AGTGCGCCTCGACGTACGGCCCCCACGCTTCAGGTAGCAGGGTGAATCCC
GACAGGTCGGCCTGGCCACGGCCGCACCGCACAAGCGCTGCGCCGACGAA
GCACAGCTTCTCGAGGGAGTGCAGGCCCACTACTAACGCGCCAGGTGCGT
CGTCGGCAGCTGCAGACACTCCGCCGGCCACGCGGTGTACCTTACCCTTG
CGGGGTTCGAACAAGGTGCAAGGCAGCGGCGGGTTCGCGCGTGGCCCGTA
GTATCCGTCCGCACACACAGCAGCACCATCGTCTTCGTCCCAGTCGGTTT
GCGCTTCTCCATTGACCGCACACACCTGACCCCGCCTTCCGGCTTGCCCC
CTGCCCCCCGCTGTTGTTTTTCTGTCGGCACGCCGTCCTGACTTCCCGCC
TCGCTGCCCGCCGCCGCTAGCCAACTTTCGTCGTCGATCGGGATGCTGTT
TCCACCGGTTGTTGGGGTCTGATGTCGTCGCCGGTGACGGACTCGACCCG
GTCCCGTCCGCTTCATCACTGCTGCTACTGCTTTTTCTACTTTCCTCTTG
GTCCTCCTCTTCTTCTCCCTCCTCTTCCTCCTCTTCCTCGTCTTGCTGCT
CGTCGTAGTGACTGGACTGCTGCTGCTGTGGCAAGGCCCACGGTATCCCA
GGCATCCCTGGACTAACCTCGTCCTCTTCTTCCGTTATTCCATCGGTGAC
GCCGTCGCCTTTGCCGGCCGCAGGCTTAAGAGCAGGCGCGTCTTGCTCCG
ATGTCGGCGAGGTGGTGGTGGTGGGATTCCTGCTGGTTGGGTTGGCTGAC
GCCGCCGCCGCCGCCGCCGCTGCCGCTGCCGCCTTTTCTTGGGCTGCTGA
GGGTGTGGTGCAACTTCGTGCTGATGTTGGTGTCGGTGGTCCACTCCCTT
CTTCGCCAGCTGGAGGAGACGTTCTTGCCCGTTTACGCTTGCGACCCATT
GCTTCCGTGGGCAGTAGCAGCAGTGGCAGAGGAGAGAGAGAAGGGCGAGA
GCAGCCTGATCGCGAGGTGTGGAGGTGCAGCAAGGGTGGTGTTGGCAGCG
CCGATGCGGCGCAATAAAGCACATCGAACCCCCCCACAAAAAGTGCAGTC
GCGTGGCCCCCACAGTGGAGTTGAGCGGAGCGCTTGGCATCAGGCGACAC
AAGCATTGAGAGATTGAGAGCATCACGGCATGACCAGCCAGACGAGGGAG
ATACACACCGACAACCTGCAGCGACTACGATACGCACATACCCCGACCTG
GAGCACGCAGAAAACATGGCGATGCGAGGCTTGGGAAAGAAAACTCCTGC
ACAACCTACAGCAGTGACGGTGATGAGATGGTAATTCATGAGGTTAGGCA
GGAATATGGCGGAGATCCGTTGCTGTATGTAGCGTACGCAACGTTGTTGG
TACCGCACACCCTCCTAGTCTCTTCGAGGGGAAAGGGAAGACAGAAGAGC
GTATTGTGCTATCGAAAGACGTTTAGTCTATCTGCATGTGCTGCAAACGA
ACGATGTTCACTGTGCTTCCATCCTACGTGCTACATATGAAAAATTGCAA
ATGCCGTTGTATTGTACCTTTACTCGATGTACCTTTTGATACACCACAGG
AAGGGCCCGTCACAGGCCTCCTCGTCTGGGACTGCTGTACGTACCAACAC
TGCTGCGGTATGTAAGGGCATTCCCAATGACACATTATGCAGTATCGCCA
GCGCCGGAGGGGGGGGGCATTTTGTTAGGACCTGGAAGGCTGCCAAAAAA
ATAATTCGTTTGCATCCGTCGTGACGGACGGCTTCCACAGATACGGGGCG
TTGGTGGGCTATCGCTCCAACATCGAAGGACAGAACAACAAGCTGTTGAA
CTGCTGGGCAAGCAGCGCGTGTTGTAAAACATTTCAGCAGCAGATACAAC
AATAGGGCCGGGCGATGAGGAGAATGTTCCTGCCTCTGTCCAACCAGAGT
ATTTGCCTACCCCTGTATTTACGACAAATGCCATGCTGCGAAAGACGTTG
ACTGCATTGGCACACATCCCACATACGCAGCGGGTCAAAGAGCGCCGCAG
CAACCGCCGTCCCGCCCGCCCCCCAACGAAACAGGTGCCCCTTCGAACCA
CGTCGCTGGTCTCGGACGCGGTGCCGTGGGTTTCACCAAGTGGTCCGACA
TCGGTCCCGCCCGCACCACTCTCGCCGAGCTCGGGGCCGCCGCCCGCCTG
GCGCGACCTGTGCGTCGTGCGGCGTTTCTAAAGACCCAGACTTCGGACCC
GTGCCAGTGGGTACGTGGCCGGCCGTGGGCATGTGATGGGCGACCTCGCC
AAGTCTAACAGCGAGGATGGGGCGGGGCGGGGCGGCCGGGGGGGCGGGGC
AGCGTCGAGGGCGGCGGTAGACTTGTCGGAGAGTAACTATGATGAGTTCT
CGGGGTATTCGGACAGGCTGTTCCGGGAAACCCCGTGACGACGAAGAGGC
GGACGCGATCTACGAGGTGCGGCTGATTCATGAGGTTGTTGTTGGACATA
AAAGGGGTGTGATGTTGTTGACGATGCTTTTTCCTTTGAAACGATGGGGG
CCCCTGTTCGTGCGCCTTCCGTGAGAGGATGCTTTCGATGCCAAGGTAAG
GGGGGTGCGTTGTGTGTTGTTGTTGTTGTTCAAGGCTGCAAGGTGGCCTG
AGTTGAGCCATAGTCAAGCTGCTGTCATCGGAGTAACGGGAAATGCTTTC
GTTGCACCCGTTTTTTTTTTTCCAAAGTGCTACACACGCGTCGCCGCCCT
GATAGTAGTAGTAGGAATACAAGCACACTCGCTCTCTCGAGCAAGCGACG
ATAAACAACAGCGACGACCGCCATTGAGAAATGTACCGTAGGTGACACAA
GATGTCACACCACCTGGATCGATTCGCAGAGCTCGGTTTCTCCACAGCTG
AAGTAGTGGCGGTGCCACAGATGGCGGCGTTGGAGCCGTCTCGTCAAGAG
CTTTCCGAATGCTCTTCGTCGTAGACTATTGGAGATTTGAACACTGGTCC
AGGGGGTGTGGTATCTTGTGTCACCTACTACACGCTTTCGCAACGCTCAG
TTGTCGGTATGTTAAAGAGTATCTACGTTTCACCGCAGCAGGAGCCACCG
CAACACCCCAACAATTTCTTGTATCACAGTTTAAGGAATCCGCAGAGCGA
GGGTATGCGGTTGGAGGCGGTGCGTCTTGAGAGGCGATCAGGGAACAGCA
AGGGTGTGGATAGCCTCATGACCAAGGCCCTGCAGGAGTGTCCCGGGTCC
GGCGTGCTTTGGGCGGAGGAGGCCCTGGCGGCACAACGGTCCGAGCAGAA
GTGAGAGAGACAGACCGCGATGTAATTTTGAGCAAGAGTAGCAGTGGCAT
AGCGTGTGACGCGTGTTGTGTGGTGGGCACTGCGATATGGAGCTACTTGT
TTAAGAAGTGTTATCGGGGGAAATGATGGCGGGAAGAAATATGGGTGGTA
CAAGTACAGCAGGCCGAGCCTGAGCAAGCAGTTTTATGGTGTTGTTGTTG
TTACCGTCGTTGCCGTACGTATCGCATGCGCATCGCCATGAAATCAGGAG
CCTTCTCTGCCCATCACCTGATGTTTCTTCATCATTTGCTTTCGTTGTGA
AATCATCTTGACGGGCGTATATGACAGACACGCCTCAAAGAAAGCACCAT
GCGCGCCCGGAAGTGTTGTGAATACCACATAAATACCAACAACCCAGGCA
TCCTACCGGACTGTCTCCCGAGGTTGGCAATGCACATCATGGACTGCTTT
TGCTGCACCCGTCCCCTTCGCACACGAACTAAACGAAAAACGCCAACAAC
ACCAAGCAGGAAAATCCCTTGAGGCGCTCAAGAGGCGCGACAACGACCCG
AACGTCATGAGCGCCGTGGCCAGGCACTTGTGGGCGGACCGAAAATATGC
CAAGACCCGCAGGTGGTTCAACCGCGCCATCACGTCTGGACCCTTACATG
GGCGACGCGTGGGCGGTGCACTACGCCTTCGAGCTGCAGCAGGGGACCGA
CGTTGAGCGAACGGACGTTCTCGGCAGGTTCGTCCACTACACAGCTTAGT
TTTTTGTTTTGTTTTTCTCCCCTTCGTCGAATCGACACGCACGACGTGTT
GTTTTCGTTGTGTGGGGTAAGGTCTGGTCAATAGGCTGGGAGGTATTTGC
ATTGTTATTCTTGTTGTCCTGCTACATATTGCTGTCGGTTCCAAGAAGCC
TGTTCTCGGTTGCACTTTGGTTTCATTTGGGCGAGGGTGCAGTGATTCGG
CAAAGAATGTCCACCCTCTTCACTCCTTTGAAGATATTGCGCTTGAAGAT
ATTGCCCATCAACATTCATAATCGGAGACTGTGATGCCGGTGAAGCCAGA
TTGATGCACTCAGCGGTATGGCCTACGACACTTCTAGATACGATTCGAAA
ACTAGCCACTACTGCTATACACCCTGCACCGTATCCGTGGCCATCTTTTG
AATAACTAGATCCCGGAAGCACACCAACATCTGATGATCCCTAAGGTGTA
CAAGTGTTTTTGTGGTACAGCAGTATGGTGATGATATATCATGTGAGGGT
GGTGATACGTGACCTAACTTTGGACGCCGAAACCGCGACAGGTGTGTGGC
GGCCGATCCTTCCCACGGGGAGCTGTGGAAGTCAATATCCAAGACAAACA
CCACCGAAAAACAGCGGTTCGACAAGGCCAGCATCCTCAGGAAGGTCGTA
GCCGCCTACTTTTCCGGCAACGGTGTAGTGGTCGTCATTCCACGAGGCCC
AACAAGCACTGGCTAGATCAAAGCGAAACGATGATTGATGTGGATTGACA
CGAGAGGAGAGCAAGGCAAAAACGTTGCCTTTCGTGCTATCGGGAAACCC
TCGAGAGAACGACACACGGTTTTGATCGAAGGTCTCCTGATCGTGTAGAG
ACAGACCGGCCGCCTTCTTCGGCAAAACTGCGTATGCTGCCGTGTAGACA
CGGGTGTTTGTGAAGGTCGTCGAAAGAGCACTCAACCAATCAATCTTCCC
GGGAAGGGGTGAGACGTCCAAGCCGCTTCTTCTCTGTTTTTCACTCTTTT
CGCGTTAAAAATAGAAGGCAAGCACGGCACCCCGGTAGACTATTTAGTTG
GTATCCTCGGAAATCTTCTAGTGGCCAGGGTGGTTCGAATTCGGCGTAAG
CGAGCTTGCAGTGTGAGTTTTCTCTCGCTTCCGTTCCTGGCCTGGGTGGA
CAGCACTCTTCTCGCATTGAAAATCGAAGGCGAAGTACCGCAGGAGGGAT
GTGTAGGTGCCTCAGTGAGAGGAACCCTTCTGCGTGACCACGAGTTGTGG
AGTAAACGGCGCACGTGCTGTGAGCGCTGATTTGAAGTGAACACACACAC
AAAAAAGGCACCGCAGGAGAGGTGGATAGGGGAGTGACCACGGATGCCTC
TACCCAAGGGTATGCACGAAAAAAAAATCAAGACACGTATGCCTACTAAT
CGAAAAT
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Coding sequence (CDS) from alignment at chr_00:1533522..1539328-

>Ec-00_001250.2 ID=Ec-00_001250.2|Name=Ec-00_001250.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=417bp|location=Sequence derived from alignment at chr_00:1533522..1539328- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGGCGAGGTGGTGGTGGTGGGATTCCTGCTGGTTGGGTTGGCTGAC
GCCGCCGCCGCCGCCGCCGCTGCCGCTGCCGCCTTTTCTTGGGCTGCTGA
GGGTGTGGTGCAACTTCGTGCTGATGTTGGTGTCGGTGGTCCACTCCCTT
CTTCGCCAGCTGGAGGAGACGTTCTTGCCCGTTTACGCTTGCGACCCATT
GCTTCCGTGGGCAGTAGCAGCAGTGGCAGAGGAGAGAGAGAAGGGCGAGA
GCAGCCTGATCGCGAGGTGTGGAGGTGCAGCAAGGGTGGTGTTGGCAGCG
CCGATGCGGCGCAATAAAGCACATCGAACCCCCCCACAAAAAGTGCAGTC
GCGTGGCCCCCACAGTGGAGTTGAGCGGAGCGCTTGGCATCAGGCGACAC
AAGCATTGAGAGATTGA
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Synonyms
The feature 'Ec-00_001250.2' has the following synonyms
Synonym
Esi0013_0072
Esi_0013_0072