Ec-00_000860.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000860.1
Unique NameEc-00_000860.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length138
Homology
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BLAST of Ec-00_000860.1 vs. uniprot
Match: D7FIY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY6_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.110e-58
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:    1 MDNPFMVSARYLLDFFEAKYLAWSSCHFDELYQKVNERHERLHQHPPDAELPKFRFGSGAESDSDSFNCWRGSGXXXXXXGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAGGESGSLAPSCPPGPP 411
            MDNPFMVSARYLLDFFEAKYLAWSSCHFDELYQKVNERHERLHQHPPDAELPKFRFGSGAESDSDSFNCWRGSGXXXXXXGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAGGESGSLAPSCPPGPP
Sbjct:    1 MDNPFMVSARYLLDFFEAKYLAWSSCHFDELYQKVNERHERLHQHPPDAELPKFRFGSGAESDSDSFNCWRGSGXXXXXXGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAGGESGSLAPSCPPGPP 137
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BLAST of Ec-00_000860.1 vs. uniprot
Match: A0A6H5KBQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ8_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.180e-43
Identity = 129/140 (92.14%), Postives = 129/140 (92.14%), Query Frame = 1 
Query:    1 MDNPFMVSARYLLDFFEAKYLAWSSCHFDELYQKVNERHERLHQHPPDAELPKFRFGSGAESDSDSFNCWRGSGXXXXXXGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---NSAGGESGSLAPSCPPGPP 411
            MDNPFMVSARYLLDFFEAKYLAWSSCHFDELY KVNERHERLHQH PDAELPKFRFGSG ESDSDS NCWRGS XXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NSAGGESGSLAPSCPPGPP
Sbjct:  506 MDNPFMVSARYLLDFFEAKYLAWSSCHFDELYLKVNERHERLHQHLPDAELPKFRFGSGPESDSDSSNCWRGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAGGESGSLAPSCPPGPP 645
The following BLAST results are available for this feature:
BLAST of Ec-00_000860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIY6_ECTSI1.110e-58100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBQ8_9PHAE1.180e-4392.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1090571..1091259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length414
Hectar predicted targeting categoryother localisation
Gene idEc-00_000860.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000860Ec-00_000860Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1090571..1091259 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000860.1.2Ec-00_000860.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1090571..1090882 -
Ec-00_000860.1.1Ec-00_000860.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1091158..1091259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000860.1CDS:Ec-00_000860.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1090571..1090882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000860.1Ec-00_000860.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1090571..1091259 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000860.1 ID=Ec-00_000860.1|Name=Ec-00_000860.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=138bp
MDNPFMVSARYLLDFFEAKYLAWSSCHFDELYQKVNERHERLHQHPPDAE
LPKFRFGSGAESDSDSFNCWRGSGGGGGSVGRSDAGGGGGFAALKPPAGG
AEGEGGGGGGGGGRPAEENSAGGESGSLAPSCPPGPP*
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spliced messenger RNA

>Ec-00_000860.1 ID=Ec-00_000860.1|Name=Ec-00_000860.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=414bp|location=Sequence derived from alignment at chr_00:1090571..1091259- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACCCTTTCATGGTTTCTGCCAGATATCTCCTGGACTTTTTCGA
GGCGAAGTACCTCGCATGGTCCTCGTGCCACTTCGACGAGCTTTACCAGA
AGGTCAACGAGCGACACGAACGCCTCCATCAGCACCCGCCCGATGCCGAG
CTCCCCAAGTTCCGTTTCGGGAGCGGCGCCGAGAGCGACAGCGACAGCTT
CAACTGCTGGAGAGGCAGCGGCGGCGGCGGCGGGAGCGTAGGGCGGAGCG
ACGCGGGCGGCGGGGGCGGCTTCGCCGCTCTCAAGCCGCCCGCTGGCGGT
GCCGAGGGGGAGGGCGGCGGCGGGGGAGGGGGCGGCGGGCGCCCCGCGGA
GGAGAACTCGGCGGGGGGGGAGAGCGGGAGCCTGGCCCCCTCTTGTCCGC
CGGGCCCCCCGTAG
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protein sequence of Ec-00_000860.1

>Ec-00_000860.1 ID=Ec-00_000860.1|Name=Ec-00_000860.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=138bp
MDNPFMVSARYLLDFFEAKYLAWSSCHFDELYQKVNERHERLHQHPPDAE
LPKFRFGSGAESDSDSFNCWRGSGGGGGSVGRSDAGGGGGFAALKPPAGG
AEGEGGGGGGGGGRPAEENSAGGESGSLAPSCPPGPP*
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mRNA from alignment at chr_00:1090571..1091259-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000860.1 ID=Ec-00_000860.1|Name=Ec-00_000860.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=689bp|location=Sequence derived from alignment at chr_00:1090571..1091259- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACAACCCTTTCATGGTTTCTGCCAGATATCTCCTGGACTTTTTCGA
GGCGAAGTACCTCGCATGGTCCTCGTGCCACTTCGACGAGCTTTACCAGA
AGGTACATCGGTCGGCGAATCAGACTACAACAGATGGTTGTCTTGGGAGC
AGCGGTCGTTTTTGGACTATTGTACATTTTTTCTTGGGAGTGGCGACGCG
ACCCCCCCCCCAAGCTCCGGCAGAGGATGTTTTGGGTCGTTGATCGGCCG
GTCAGCGCGTGGTATGCTACTATCCCAGACGCACACATGAACCGAAAGCT
ACCGAAAGCTTACCCCGACCCCTCGCTCGGGCACCCTCTGCCCTGCCCCC
TCTCCACTCCCCGCCCTTCCGCGGCAGGTCAACGAGCGACACGAACGCCT
CCATCAGCACCCGCCCGATGCCGAGCTCCCCAAGTTCCGTTTCGGGAGCG
GCGCCGAGAGCGACAGCGACAGCTTCAACTGCTGGAGAGGCAGCGGCGGC
GGCGGCGGGAGCGTAGGGCGGAGCGACGCGGGCGGCGGGGGCGGCTTCGC
CGCTCTCAAGCCGCCCGCTGGCGGTGCCGAGGGGGAGGGCGGCGGCGGGG
GAGGGGGCGGCGGGCGCCCCGCGGAGGAGAACTCGGCGGGGGGGGAGAGC
GGGAGCCTGGCCCCCTCTTGTCCGCCGGGCCCCCCGTAG
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Coding sequence (CDS) from alignment at chr_00:1090571..1091259-

>Ec-00_000860.1 ID=Ec-00_000860.1|Name=Ec-00_000860.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=414bp|location=Sequence derived from alignment at chr_00:1090571..1091259- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACAACCCTTTCATGGTTTCTGCCAGATATCTCCTGGACTTTTTCGA
GGCGAAGTACCTCGCATGGTCCTCGTGCCACTTCGACGAGCTTTACCAGA
AGGTCAACGAGCGACACGAACGCCTCCATCAGCACCCGCCCGATGCCGAG
CTCCCCAAGTTCCGTTTCGGGAGCGGCGCCGAGAGCGACAGCGACAGCTT
CAACTGCTGGAGAGGCAGCGGCGGCGGCGGCGGGAGCGTAGGGCGGAGCG
ACGCGGGCGGCGGGGGCGGCTTCGCCGCTCTCAAGCCGCCCGCTGGCGGT
GCCGAGGGGGAGGGCGGCGGCGGGGGAGGGGGCGGCGGGCGCCCCGCGGA
GGAGAACTCGGCGGGGGGGGAGAGCGGGAGCCTGGCCCCCTCTTGTCCGC
CGGGCCCCCCGTAG
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Synonyms
The feature 'Ec-00_000860.1' has the following synonyms
Synonym
Esi1243_0001
Esi_1243_0001